Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005010

Physical Location & Seq

Genomic Coordinates Reverse (-)

22937452 .. 22939396

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G216200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGACGACAGCTTCAGAGTCCGGGCAGAGAAGGTTTTCGGATCGCTCCCTTCGTCGACCTCGACCACTTCGTCTCTGCAAGTGCAATCCTCTCCCTGGTCCGTCACCGGCGACGAGGTCGAGCGCAGAGAATGGAGGCGCGGTACGGACGCCGACTCATCTGACAGGGACCAAACGCCGTGTTCATCGTCGTTTTTGGAAGACGAATGGGGAATCAGAGCGTCGATAGGCTTGGATCCCACTCTGGATTACGAGGATGAGGAAGATGAATATGACAAAGTGGCTGCGGGCACAGAAGGTCTTGGTGACCGATTGTTCATGAACGAGGTTACCCATCATGGGTCTTATTTAAACTCCCACAATGTGCTTCATGGTAGCAATAAAGATCCACGTGCCAATTTTCTGGCTGCAAGACTTAGGCTGAAAGAGGATGATGCTGAAGCTCGAAAATTGAATTCTCCTGCGGCTTCTGCTTCACAAGTTAAGGAGCAGCTTGTTAAATCACCTGAAGATGTTGGCCAGCCAAAGTCTATATTGAAAAGGAAAGACAATACCTCGGTTGTGAAGGCGCAGAAACGTGTCAGGTTTAATCCTGGTTGTGTAACTCATTGTGATTCTGAAGAGTCACCAGAAATACTTGAAGACTTTGATATGGGCTCTTCTGATGTAAATGGAATGGATTCAGATAATGGTTCTGGGTTGGCTCCTAATGCTTCTGGTGTTCCTGATTATTTAGTGAATCCTTCCAAGTATACACGGTATAGCTTTGATACAACAACTGAAGTTGATGAAGATGGCAACACCCGAGCTTTTATGGACTACCTTAGTCACCCTAAGAGTTCAAATACAGATTCAAGATCAGAGATGGAGGATGCTTCAGCTCAACTGCCCAAGTCTGTGACCTTTGTTTCAAAGAAAAAGACAGCAGATGGTAATGCAGTAAACGATATCAACAATATGAAGCAAGACGATGAAGATGACAGGAAGCCGTCCTTAAACCGAGCAAGCTTCCCTGTTGGCATTGCAGCTGTTGAAGTCCAAAGTGAAGATAGTGCAGTGGAGGAAGAAGGGTCGGCACCAAACCCAGCAGATTTTAGTGGTTGTTTAGAAACACCTGGTCGGAAGTATCGAACAAAATCATTGTCGGATGAGTCCGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TSSC4

Protein Analysis

388

Amino Acids

42.43

Weight (kDa)

4.58

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13310 AT5G13310
fragaria_vesca	FvH4_4g22730
malus_domestica	MD13G1129900.v1.1
prunus_persica	Prupe.1G216200_v2.0.a1
pyrus_communis	pycom13g11300
rosa_chinensis	RchiOBHm_Chr4g0428951
rosa_laevigata	RLG00000007111
rosa_multiflora	Rmu_co8308675.1_g000001 Rmu_sc0008629.1_g000001 Rmu_sc0014815.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370620
rosa_rugosa	Rorug04G0231000
rosa_samantha	Rh1DG096700 Rh3DG066500 Rh4AG287400 Rh4BG293300 Rh4CG309200 Rh4DG290400 Rh5AG269400 Rh5AG408600 Rh6BG138400 Rh6CG104200 Rh6CG135900 Rh6CG212700 Rh6CG397100 Rh6DG095000 Rh6DG122200
rosa_wichuraiana	Rw4G022110 Rw4G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	70
AccB1I	GGYRCC	1 cut(s)	1075
AccI	GTMKAC	2 cut(s)	56, 752
AccII	CGCG	1 cut(s)	141
AciI	CCGC	3 cut(s)	141, 287, 464
AclWI	GGATC	4 cut(s)	49, 230, 243, 380
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	1 cut(s)	454
AcuI	CTGAAG	5 cut(s)	459, 528, 639, 801, 861
AcvI	CACGTG	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	150
AdeI	CACNNNGTG	1 cut(s)	364
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	2 cut(s)	96, 339
AflIII	ACRYGT	1 cut(s)	577
AgsI	TTSAA	7 cut(s)	454, 538, 641, 843, 855, 912, 1034
AjnI	CCWGG	3 cut(s)	95, 592, 1114
AluBI	AGCT	8 cut(s)	12, 443, 493, 765, 809, 881, 1008, 1028
AluI	AGCT	8 cut(s)	12, 443, 493, 765, 809, 881, 1008, 1028
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	4 cut(s)	49, 230, 243, 380
Ama87I	CYCGRG	1 cut(s)	804
AoxI	GGCC	1 cut(s)	517
ApeKI	GCWGC	4 cut(s)	284, 407, 490, 1025
ApoI	RAATTY	1 cut(s)	454
ArsI	GACNNNNNNTTYG	2 cut(s)	1127, 1159
Asp700I	GAANNNNTTC	2 cut(s)	35, 679
AspLEI	GCGC	3 cut(s)	126, 141, 571
AspS9I	GGNCC	2 cut(s)	99, 169
AsuC2I	CCSGG	1 cut(s)	23
AsuHPI	GGTGA	5 cut(s)	97, 317, 495, 618, 821
AvaI	CYCGRG	1 cut(s)	804
AvaII	GGWCC	2 cut(s)	99, 169
BaeGI	GKGCMC	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	519
BamHI	GGATCC	1 cut(s)	235
BanI	GGYRCC	1 cut(s)	1075
BanII	GRGCYC	1 cut(s)	659
BbrPI	CACGTG	1 cut(s)	392
BbsI	GAAGAC	2 cut(s)	207, 648
BbvI	GCAGC	4 cut(s)	271, 394, 502, 1037
BccI	CCATC	4 cut(s)	342, 788, 859, 923
BceAI	ACGGC	2 cut(s)	163, 973
BciT130I	CCWGG	3 cut(s)	97, 594, 1116
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	78
BisI	GCNGC	5 cut(s)	285, 408, 465, 491, 1026
BlsI	GCNGC	5 cut(s)	286, 409, 466, 492, 1027
Bme1390I	CCNGG	4 cut(s)	23, 97, 594, 1116
Bme18I	GGWCC	2 cut(s)	99, 169
BmeT110I	CYCGRG	1 cut(s)	804
BmgT120I	GGNCC	2 cut(s)	99, 169
BmiI	GGNNCC	4 cut(s)	170, 237, 705, 1077
BmrFI	CCNGG	4 cut(s)	23, 97, 594, 1116
BmsI	GCATC	2 cut(s)	424, 862
BpiI	GAAGAC	2 cut(s)	207, 648
BpuMI	CCSGG	1 cut(s)	23
BsaAI	YACGTR	1 cut(s)	392
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	95, 555
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 339
Bse118I	RCCGGY	1 cut(s)	107
Bse3DI	GCAATG	1 cut(s)	1020
BseBI	CCWGG	3 cut(s)	97, 594, 1116
BseDI	CCNNGG	2 cut(s)	95, 555
BseGI	GGATG	4 cut(s)	262, 436, 877, 1153
BseLI	CCNNNNNNNGG	2 cut(s)	96, 339
BseMI	GCAATG	1 cut(s)	1020
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	4 cut(s)	271, 394, 502, 1037
BseYI	CCCAGC	1 cut(s)	1084
BsgI	GTGCAG	1 cut(s)	1074
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	519
BshNI	GGYRCC	1 cut(s)	1075
BsiHKCI	CYCGRG	1 cut(s)	804
BsiSI	CCGG	2 cut(s)	22, 108
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	2 cut(s)	96, 339
BsmAI	GTCTC	1 cut(s)	78
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	519
BsoBI	CYCGRG	1 cut(s)	804
Bsp1286I	GDGCHC	2 cut(s)	293, 659
Bsp143I	GATC	4 cut(s)	41, 235, 385, 857
BspACI	CCGC	3 cut(s)	141, 287, 464
BspANI	GGCC	1 cut(s)	519
BspFNI	CGCG	1 cut(s)	141
BspHI	TCATGA	1 cut(s)	318
BspLI	GGNNCC	4 cut(s)	170, 237, 705, 1077
BspPI	GGATC	4 cut(s)	49, 230, 243, 380
BspQI	GCTCTTC	1 cut(s)	664
BspT107I	GGYRCC	1 cut(s)	1075
BsrDI	GCAATG	1 cut(s)	1020
BsrFI	RCCGGY	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	95, 555
BssMI	GATC	4 cut(s)	41, 235, 385, 857
BssNAI	GTATAC	1 cut(s)	753
BssNI	GRCGYC	1 cut(s)	150
Bst1107I	GTATAC	1 cut(s)	753
Bst2UI	CCWGG	3 cut(s)	97, 594, 1116
Bst4CI	ACNGT	1 cut(s)	759
Bst6I	CTCTTC	2 cut(s)	615, 664
BstACI	GRCGYC	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	289, 521, 1006
BstDEI	CTNAG	3 cut(s)	416, 824, 834
BstEII	GGTNACC	2 cut(s)	305, 328
BstF5I	GGATG	4 cut(s)	262, 436, 877, 1153
BstFNI	CGCG	1 cut(s)	141
BstHHI	GCGC	3 cut(s)	126, 141, 571
BstKTI	GATC	4 cut(s)	44, 238, 388, 860
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	4 cut(s)	41, 235, 385, 857
BstMWI	GCNNNNNNNGC	2 cut(s)	470, 710
BstNI	CCWGG	3 cut(s)	97, 594, 1116
BstPI	GGTNACC	2 cut(s)	305, 328
BstSCI	CCNGG	4 cut(s)	21, 95, 592, 1114
BstSLI	GKGCMC	1 cut(s)	293
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	4 cut(s)	271, 394, 502, 1037
BstV2I	GAAGAC	2 cut(s)	207, 648
BstX2I	RGATCY	2 cut(s)	235, 385
BstXI	CCANNNNNNTGG	1 cut(s)	403
BstYI	RGATCY	2 cut(s)	235, 385
BstZ17I	GTATAC	1 cut(s)	753
BsuRI	GGCC	1 cut(s)	519
BtsCI	GGATG	4 cut(s)	262, 436, 877, 1153
BtsI	GCAGTG	1 cut(s)	1062
BtsIMutI	CAGTG	1 cut(s)	1062
Cac8I	GCNNGC	3 cut(s)	289, 521, 1006
CciI	TCATGA	1 cut(s)	318
CfoI	GCGC	3 cut(s)	126, 141, 571
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	2 cut(s)	99, 169
CseI	GACGC	2 cut(s)	158, 210
CsiI	ACCWGGT	1 cut(s)	1114
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	3 cut(s)	319, 338, 371
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	3 cut(s)	416, 824, 834
DpnI	GATC	4 cut(s)	43, 237, 387, 859
DpnII	GATC	4 cut(s)	41, 235, 385, 857
DraI	TTTAAA	1 cut(s)	351
DraIII	CACNNNGTG	1 cut(s)	364
DrdI	GACNNNNNNGTC	1 cut(s)	70
DseDI	GACNNNNNNGTC	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	517
Eam1104I	CTCTTC	2 cut(s)	615, 664
EarI	CTCTTC	2 cut(s)	615, 664
Eco24I	GRGCYC	1 cut(s)	659
Eco32I	GATATC	1 cut(s)	949
Eco47I	GGWCC	2 cut(s)	99, 169
Eco57I	CTGAAG	5 cut(s)	459, 528, 639, 801, 861
Eco72I	CACGTG	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	804
Eco91I	GGTNACC	2 cut(s)	305, 328
EcoO65I	GGTNACC	2 cut(s)	305, 328
EcoRI	GAATTC	1 cut(s)	454
EcoRII	CCWGG	3 cut(s)	95, 592, 1114
EcoRV	GATATC	1 cut(s)	949
EcoT38I	GRGCYC	1 cut(s)	659
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	3 cut(s)	322, 341, 374
FalI	AAGNNNNNCTT	2 cut(s)	977, 1009
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	3 cut(s)	318, 337, 370
FauI	CCCGC	1 cut(s)	280
FblI	GTMKAC	2 cut(s)	56, 752
Fnu4HI	GCNGC	5 cut(s)	285, 408, 465, 491, 1026
FokI	GGATG	4 cut(s)	269, 443, 884, 1160
FriOI	GRGCYC	1 cut(s)	659
Fsp4HI	GCNGC	5 cut(s)	285, 408, 465, 491, 1026
GlaI	GCGC	3 cut(s)	125, 140, 570
GluI	GCNGC	5 cut(s)	285, 408, 465, 491, 1026
GsaI	CCCAGC	1 cut(s)	1088
HaeIII	GGCC	1 cut(s)	519
HapII	CCGG	2 cut(s)	22, 108
HgaI	GACGC	2 cut(s)	158, 210
HhaI	GCGC	3 cut(s)	126, 141, 571
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	3 cut(s)	322, 341, 374
Hin6I	GCGC	3 cut(s)	124, 139, 569
HinP1I	GCGC	3 cut(s)	124, 139, 569
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HindIII	AAGCTT	1 cut(s)	1006
HpaII	CCGG	2 cut(s)	22, 108
HphI	GGTGA	5 cut(s)	97, 317, 495, 618, 821
Hpy166II	GTNNAC	3 cut(s)	57, 753, 943
Hpy188III	TCNNGA	5 cut(s)	245, 319, 725, 855, 1161
Hpy8I	GTNNAC	3 cut(s)	57, 753, 943
Hpy99I	CGWCG	4 cut(s)	58, 116, 193, 226
HpyAV	CCTTC	6 cut(s)	25, 60, 290, 559, 753, 1061
HpyCH4III	ACNGT	1 cut(s)	759
HpyCH4IV	ACGT	2 cut(s)	391, 577
HpyCH4V	TGCA	6 cut(s)	79, 85, 410, 938, 1025, 1055
HpyF10VI	GCNNNNNNNGC	2 cut(s)	470, 710
HpyF3I	CTNAG	3 cut(s)	416, 824, 834
HpySE526I	ACGT	2 cut(s)	391, 577
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	322, 341, 374
HspAI	GCGC	3 cut(s)	124, 139, 569
Kzo9I	GATC	4 cut(s)	41, 235, 385, 857
LguI	GCTCTTC	1 cut(s)	664
LmnI	GCTCC	3 cut(s)	51, 487, 709
Lsp1109I	GCAGC	4 cut(s)	271, 394, 502, 1037
LweI	GCATC	2 cut(s)	424, 862
MabI	ACCWGGT	1 cut(s)	1114
MaeII	ACGT	2 cut(s)	391, 577
MaeIII	GTNAC	7 cut(s)	103, 305, 328, 601, 624, 827, 898
MalI	GATC	4 cut(s)	43, 237, 387, 859
MboI	GATC	4 cut(s)	41, 235, 385, 857
MflI	RGATCY	2 cut(s)	235, 385
MhlI	GDGCHC	2 cut(s)	293, 659
MlsI	TGGCCA	1 cut(s)	519
MluCI	AATT	3 cut(s)	397, 449, 454
MluNI	TGGCCA	1 cut(s)	519
MlyI	GAGTC	4 cut(s)	27, 149, 632, 1160
MmeI	TCCRAC	2 cut(s)	1100, 1125
Mox20I	TGGCCA	1 cut(s)	519
MroXI	GAANNNNTTC	2 cut(s)	35, 679
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	5 cut(s)	350, 483, 498, 588, 995
Msp20I	TGGCCA	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	1028
MspI	CCGG	2 cut(s)	22, 108
MspR9I	CCNGG	4 cut(s)	23, 97, 594, 1116
MvaI	CCWGG	3 cut(s)	97, 594, 1116
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	470, 710
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	4 cut(s)	41, 235, 385, 857
NlaIII	CATG	3 cut(s)	322, 341, 374
NlaIV	GGNNCC	4 cut(s)	170, 237, 705, 1077
NmuCI	GTSAC	5 cut(s)	103, 305, 624, 827, 898
PagI	TCATGA	1 cut(s)	318
PciSI	GCTCTTC	1 cut(s)	664
PcsI	WCGNNNNNNNCGW	4 cut(s)	50, 59, 68, 1126
PdmI	GAANNNNTTC	2 cut(s)	35, 679
PfeI	GAWTC	6 cut(s)	213, 614, 680, 739, 851, 1157
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	5 cut(s)	286, 409, 466, 492, 1027
PleI	GAGTC	4 cut(s)	26, 149, 631, 1159
PmaCI	CACGTG	1 cut(s)	392
PmlI	CACGTG	1 cut(s)	392
PpsI	GAGTC	4 cut(s)	26, 149, 631, 1159
Ppu21I	YACGTR	1 cut(s)	392
Psp6I	CCWGG	3 cut(s)	95, 592, 1114
PspCI	CACGTG	1 cut(s)	392
PspEI	GGTNACC	2 cut(s)	305, 328
PspFI	CCCAGC	1 cut(s)	1084
PspGI	CCWGG	3 cut(s)	95, 592, 1114
PspN4I	GGNNCC	4 cut(s)	170, 237, 705, 1077
PspPI	GGNCC	2 cut(s)	99, 169
PsuI	RGATCY	2 cut(s)	235, 385
PsyI	GACNNNGTC	1 cut(s)	116
PvuII	CAGCTG	1 cut(s)	1028
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SalI	GTCGAC	1 cut(s)	55
SapI	GCTCTTC	1 cut(s)	664
SaqAI	TTAA	5 cut(s)	350, 483, 498, 588, 995
SatI	GCNGC	5 cut(s)	285, 408, 465, 491, 1026
Sau3AI	GATC	4 cut(s)	41, 235, 385, 857
Sau96I	GGNCC	2 cut(s)	99, 169
SchI	GAGTC	4 cut(s)	27, 149, 632, 1160
ScrFI	CCNGG	4 cut(s)	23, 97, 594, 1116
SduI	GDGCHC	2 cut(s)	293, 659
SexAI	ACCWGGT	1 cut(s)	1114
SfaNI	GCATC	2 cut(s)	424, 862
SgrAI	CRCCGGYG	1 cut(s)	107
SinI	GGWCC	2 cut(s)	99, 169
Sse9I	AATT	3 cut(s)	397, 449, 454
SsiI	CCGC	3 cut(s)	141, 287, 464
StyD4I	CCNGG	4 cut(s)	21, 95, 592, 1114
TaaI	ACNGT	1 cut(s)	759
TaiI	ACGT	2 cut(s)	394, 580
TaqI	TCGA	6 cut(s)	56, 62, 120, 224, 445, 1129
TaqII	GACCGA	1 cut(s)	324
TasI	AATT	3 cut(s)	397, 449, 454
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	6 cut(s)	213, 614, 680, 739, 851, 1157
Tru1I	TTAA	5 cut(s)	350, 483, 498, 588, 995
Tru9I	TTAA	5 cut(s)	350, 483, 498, 588, 995
TscAI	CASTG	1 cut(s)	1062
TseFI	GTSAC	5 cut(s)	103, 305, 624, 827, 898
TseI	GCWGC	4 cut(s)	284, 407, 490, 1025
Tsp45I	GTSAC	5 cut(s)	103, 305, 624, 827, 898
TspDTI	ATGAA	8 cut(s)	174, 282, 307, 335, 359, 804, 974, 987
TspGWI	ACGGA	2 cut(s)	91, 161
TspRI	CASTG	1 cut(s)	1062
Tth111I	GACNNNGTC	1 cut(s)	116
VpaK11BI	GGWCC	2 cut(s)	99, 169
XapI	RAATTY	1 cut(s)	454
XmiI	GTMKAC	2 cut(s)	56, 752
XmnI	GAANNNNTTC	2 cut(s)	35, 679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.