Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005010

Physical Location & Seq

Genomic Coordinates Reverse (-)

35340695 .. 35342349

Gene Structure 1655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG212700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGATCCTACTCTGGATTTCGAGGAAGAGGAAGATGAATATGACAAAGTGGCTTCGGGTGCTGAAGCTGTTGATGATGATCGTTTGTTTATGGACGATGTTACCAACCATGGCTCTTATTTGAACTCTTACGATGTATTGGTTGGTAAGGATTCGCGTGCGAATCACCTGGCTTCCAGGCGCAGGCTGAAAGAAGATGATGCTGAAGCTCAGAACCCTAGTTCTACACCAGTGGCTTCTGCTGCACTAGTTAAGCAACAGTTTGCGAAATCACCTGAAGATGGCGGTCAGCCAAAGCCTATACTGAAAAGGAAAGACAATTCCTCGGATAGCAAGTCCCGAAAACGTGTTAGGTTTGACCCTGCTTTTGTAGATCAGAGTGACGGTGAAGAATCATCAGGAAAAGTTCAAAACTTGCTTCCGGATATTGGTTCTGGATTAACTGCTTCCCGGGTTTCTTTGAAGAAAAAGACGGCTTCTCAGATCGATATAAAGGTTCCTGGAGGGGGAATAGAGCTAGAGGAAGAGTTTGGGAAAATGGGAGAGAGCCAGAAGCAGTTCCAGATGGGAACCATTGAGGCTTTGAGTTTGTCAGTGGTGTCGTCTGTTTGCTTCAAGGCTTTCCAAAGAGCAAAACATGAGCATGAGGCATTAAAGAGGCAGCTTGAAACTTATTTCCAGTTGAGAAGACAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TSSC4

Protein Analysis

232

Amino Acids

25.76

Weight (kDa)

5.29

Isoelectric Point (pI)

56.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13310 AT5G13310
fragaria_vesca	FvH4_4g22730
malus_domestica	MD13G1129900.v1.1
prunus_persica	Prupe.1G216200_v2.0.a1
pyrus_communis	pycom13g11300
rosa_chinensis	RchiOBHm_Chr4g0428951
rosa_laevigata	RLG00000007111
rosa_multiflora	Rmu_co8308675.1_g000001 Rmu_sc0008629.1_g000001 Rmu_sc0014815.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370620
rosa_rugosa	Rorug04G0231000
rosa_samantha	Rh1DG096700 Rh3DG066500 Rh4AG287400 Rh4BG293300 Rh4CG309200 Rh4DG290400 Rh5AG269400 Rh5AG408600 Rh6BG138400 Rh6CG104200 Rh6CG135900 Rh6CG212700 Rh6CG397100 Rh6DG095000 Rh6DG122200
rosa_wichuraiana	Rw4G022110 Rw4G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	157
AccIII	TCCGGA	1 cut(s)	421
AciI	CCGC	1 cut(s)	285
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	3 cut(s)	84, 225, 297
AfiI	CCNNNNNNNGG	4 cut(s)	183, 281, 428, 506
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	5 cut(s)	124, 410, 463, 616, 668
AhlI	ACTAGT	1 cut(s)	247
AjnI	CCWGG	3 cut(s)	168, 176, 499
AluBI	AGCT	4 cut(s)	68, 209, 517, 664
AluI	AGCT	4 cut(s)	68, 209, 517, 664
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	450
Aor13HI	TCCGGA	1 cut(s)	421
ApeKI	GCWGC	2 cut(s)	242, 661
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
Asp700I	GAANNNNTTC	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	183
AsuC2I	CCSGG	2 cut(s)	451, 452
AsuHPI	GGTGA	3 cut(s)	158, 264, 398
AvaI	CYCGRG	1 cut(s)	450
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	694
BbvI	GCAGC	2 cut(s)	229, 673
BccI	CCATC	2 cut(s)	275, 559
BceAI	ACGGC	1 cut(s)	489
BciT130I	CCWGG	3 cut(s)	170, 178, 501
BcnI	CCSGG	2 cut(s)	451, 452
BcuI	ACTAGT	1 cut(s)	247
BfaI	CTAG	3 cut(s)	219, 248, 518
BisI	GCNGC	2 cut(s)	243, 662
BlsI	GCNGC	2 cut(s)	244, 663
Bme1390I	CCNGG	5 cut(s)	170, 178, 451, 452, 501
BmeT110I	CYCGRG	1 cut(s)	450
BmiI	GGNNCC	3 cut(s)	6, 498, 571
BmrFI	CCNGG	5 cut(s)	170, 178, 451, 452, 501
BmsI	GCATC	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	694
BpmI	CTGGAG	1 cut(s)	522
BpuMI	CCSGG	2 cut(s)	451, 452
Bsa29I	ATCGAT	1 cut(s)	486
BsaBI	GATNNNNATC	1 cut(s)	78
BsaJI	CCNNGG	3 cut(s)	109, 324, 450
BsaWI	WCCGGW	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	4 cut(s)	183, 281, 428, 506
Bse1I	ACTGG	2 cut(s)	230, 679
Bse8I	GATNNNNATC	1 cut(s)	78
BseAI	TCCGGA	1 cut(s)	421
BseBI	CCWGG	3 cut(s)	170, 178, 501
BseCI	ATCGAT	1 cut(s)	486
BseDI	CCNNGG	3 cut(s)	109, 324, 450
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	4 cut(s)	183, 281, 428, 506
BseMII	CTCAG	2 cut(s)	224, 494
BseNI	ACTGG	2 cut(s)	230, 679
BseXI	GCAGC	2 cut(s)	229, 673
BsgI	GTGCAG	1 cut(s)	228
Bsh1236I	CGCG	1 cut(s)	157
BshVI	ATCGAT	1 cut(s)	486
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	2 cut(s)	422, 451
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	4 cut(s)	183, 281, 428, 506
BsmFI	GGGAC	1 cut(s)	322
BsoBI	CYCGRG	1 cut(s)	450
Bsp13I	TCCGGA	1 cut(s)	421
Bsp143I	GATC	4 cut(s)	4, 79, 373, 483
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	1 cut(s)	285
BspCNI	CTCAG	2 cut(s)	223, 493
BspDI	ATCGAT	1 cut(s)	486
BspEI	TCCGGA	1 cut(s)	421
BspFNI	CGCG	1 cut(s)	157
BspLI	GGNNCC	3 cut(s)	6, 498, 571
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	230, 679
BssECI	CCNNGG	3 cut(s)	109, 324, 450
BssMI	GATC	4 cut(s)	4, 79, 373, 483
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	3 cut(s)	170, 178, 501
Bst4CI	ACNGT	2 cut(s)	261, 386
Bst6I	CTCTTC	2 cut(s)	21, 519
BstC8I	GCNNGC	2 cut(s)	159, 185
BstDEI	CTNAG	2 cut(s)	210, 480
BstDSI	CCRYGG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	4 cut(s)	7, 82, 376, 486
BstMBI	GATC	4 cut(s)	4, 79, 373, 483
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 242
BstNI	CCWGG	3 cut(s)	170, 178, 501
BstSCI	CCNGG	5 cut(s)	168, 176, 449, 450, 499
BstUI	CGCG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	229, 673
BstV2I	GAAGAC	1 cut(s)	694
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu15I	ATCGAT	1 cut(s)	486
BsuTUI	ATCGAT	1 cut(s)	486
BtgI	CCRYGG	1 cut(s)	109
BtsIMutI	CAGTG	2 cut(s)	237, 600
Cac8I	GCNNGC	2 cut(s)	159, 185
CfoI	GCGC	1 cut(s)	183
Cfr9I	CCCGGG	1 cut(s)	450
ClaI	ATCGAT	1 cut(s)	486
CviAII	CATG	3 cut(s)	110, 638, 644
DdeI	CTNAG	2 cut(s)	210, 480
DpnI	GATC	4 cut(s)	6, 81, 375, 485
DpnII	GATC	4 cut(s)	4, 79, 373, 483
Eam1104I	CTCTTC	2 cut(s)	21, 519
EarI	CTCTTC	2 cut(s)	21, 519
Eco130I	CCWWGG	1 cut(s)	109
Eco57I	CTGAAG	3 cut(s)	84, 225, 297
Eco88I	CYCGRG	1 cut(s)	450
EcoRII	CCWGG	3 cut(s)	168, 176, 499
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	3 cut(s)	113, 641, 647
FaiI	YATR	8 cut(s)	42, 92, 111, 302, 491, 639, 645, 697
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	3 cut(s)	109, 637, 643
Fnu4HI	GCNGC	2 cut(s)	243, 662
Fsp4HI	GCNGC	2 cut(s)	243, 662
FspBI	CTAG	3 cut(s)	219, 248, 518
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	2 cut(s)	243, 662
GsuI	CTGGAG	1 cut(s)	522
HapII	CCGG	2 cut(s)	422, 451
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	3 cut(s)	113, 641, 647
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HinfI	GANTC	3 cut(s)	152, 163, 392
HpaII	CCGG	2 cut(s)	422, 451
HphI	GGTGA	3 cut(s)	158, 264, 398
Hpy188I	TCNGA	4 cut(s)	213, 328, 378, 483
Hpy188III	TCNNGA	6 cut(s)	14, 339, 399, 422, 435, 562
HpyCH4III	ACNGT	2 cut(s)	261, 386
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 242
HpyF3I	CTNAG	2 cut(s)	210, 480
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	3 cut(s)	113, 641, 647
HspAI	GCGC	1 cut(s)	181
Kpn2I	TCCGGA	1 cut(s)	421
Kzo9I	GATC	4 cut(s)	4, 79, 373, 483
Lsp1109I	GCAGC	2 cut(s)	229, 673
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	3 cut(s)	219, 248, 518
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	2 cut(s)	100, 380
MalI	GATC	4 cut(s)	6, 81, 375, 485
MboI	GATC	4 cut(s)	4, 79, 373, 483
MboII	GAAGA	8 cut(s)	38, 44, 206, 290, 401, 475, 536, 699
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	1 cut(s)	319
MnlI	CCTC	8 cut(s)	16, 22, 334, 497, 514, 571, 640, 651
MroI	TCCGGA	1 cut(s)	421
MroXI	GAANNNNTTC	1 cut(s)	557
MseI	TTAA	3 cut(s)	252, 440, 653
MslI	CAYNNNNRTG	1 cut(s)	642
MspI	CCGG	2 cut(s)	422, 451
MspR9I	CCNGG	5 cut(s)	170, 178, 451, 452, 501
MvaI	CCWGG	3 cut(s)	170, 178, 501
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	2 cut(s)	59, 242
NciI	CCSGG	2 cut(s)	451, 452
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	4 cut(s)	4, 79, 373, 483
NlaIII	CATG	3 cut(s)	113, 641, 647
NlaIV	GGNNCC	3 cut(s)	6, 498, 571
NmuCI	GTSAC	1 cut(s)	380
PdmI	GAANNNNTTC	1 cut(s)	557
PfeI	GAWTC	3 cut(s)	152, 163, 392
PfoI	TCCNGGA	1 cut(s)	499
PkrI	GCNGC	2 cut(s)	244, 663
Psp6I	CCWGG	3 cut(s)	168, 176, 499
PspGI	CCWGG	3 cut(s)	168, 176, 499
PspN4I	GGNNCC	3 cut(s)	6, 498, 571
PsuI	RGATCY	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	642
SaqAI	TTAA	3 cut(s)	252, 440, 653
SatI	GCNGC	2 cut(s)	243, 662
Sau3AI	GATC	4 cut(s)	4, 79, 373, 483
ScrFI	CCNGG	5 cut(s)	170, 178, 451, 452, 501
SetI	ASST	9 cut(s)	70, 171, 211, 277, 349, 356, 498, 519, 666
SfaNI	GCATC	1 cut(s)	190
SmaI	CCCGGG	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	642
SpeI	ACTAGT	1 cut(s)	247
Sse9I	AATT	1 cut(s)	319
SsiI	CCGC	1 cut(s)	285
SspMI	CTAG	3 cut(s)	219, 248, 518
StyD4I	CCNGG	5 cut(s)	168, 176, 449, 450, 499
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	2 cut(s)	261, 386
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	2 cut(s)	21, 486
TasI	AATT	1 cut(s)	319
TfiI	GAWTC	3 cut(s)	152, 163, 392
Tru1I	TTAA	3 cut(s)	252, 440, 653
Tru9I	TTAA	3 cut(s)	252, 440, 653
TscAI	CASTG	2 cut(s)	237, 600
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	2 cut(s)	242, 661
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	1 cut(s)	51
TspMI	CCCGGG	1 cut(s)	450
TspRI	CASTG	2 cut(s)	237, 600
XmaI	CCCGGG	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	557
XspI	CTAG	3 cut(s)	219, 248, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.