Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8308675.1

Orthogroup ID

OG0005010

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 643

Gene Structure 643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8308675.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 643 bp

agttaagcaacagtttgcgaaatcacctgaagatggcggtcagccaaagcctatactgaaaaggaaagacaattcctccgatagcaagtcccgaaaacgtgttaggtttgaccctgcttttgtagatcagagtgatggtgaagaatcatcaggaaaagttcaaaacttggttcccgatattggttctggattaactgcttcccgggtgacggcttctcaggttcctgattatttggtgaatccttcaaagtatacgtgttacagttttgattcaacaagtgaggttgatgaaggtggcaacaccaaggcttgtatggactacattactcaggttgaaagctcagggtcagagatggagatggaggatgcttcacctcaacttcccgagtctgtgacttttgttccaaagaaaaagactgtcgatggtagcacaagaacaaagcaggacgaggaagatgatgagaagcagtccttaaatataaaaggcgtcgctgttggcattgcagctatggaagaaaatgaaatcagtgcggcagaggaggaagacaagtcagagcaaaatgcagccgttttaagtgattgtttatcaaaaagtggtcggaagtttcgaaccaaaccaatgtcagatgatgagtctgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TSSC4

Protein Analysis

213

Amino Acids

23.21

Weight (kDa)

4.59

Isoelectric Point (pI)

63.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13310 AT5G13310
fragaria_vesca	FvH4_4g22730
malus_domestica	MD13G1129900.v1.1
prunus_persica	Prupe.1G216200_v2.0.a1
pyrus_communis	pycom13g11300
rosa_chinensis	RchiOBHm_Chr4g0428951
rosa_laevigata	RLG00000007111
rosa_multiflora	Rmu_co8308675.1_g000001 Rmu_sc0008629.1_g000001 Rmu_sc0014815.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370620
rosa_rugosa	Rorug04G0231000
rosa_samantha	Rh1DG096700 Rh3DG066500 Rh4AG287400 Rh4BG293300 Rh4CG309200 Rh4DG290400 Rh5AG269400 Rh5AG408600 Rh6BG138400 Rh6CG104200 Rh6CG135900 Rh6CG212700 Rh6CG397100 Rh6DG095000 Rh6DG122200
rosa_wichuraiana	Rw4G022110 Rw4G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	2 cut(s)	37, 531
AcuI	CTGAAG	1 cut(s)	49
AcyI	GRCGYC	1 cut(s)	487
AfiI	CCNNNNNNNGG	3 cut(s)	33, 180, 209
AflIII	ACRYGT	2 cut(s)	98, 255
AgsI	TTSAA	4 cut(s)	162, 247, 274, 336
AluBI	AGCT	2 cut(s)	340, 507
AluI	AGCT	2 cut(s)	340, 507
Ama87I	CYCGRG	2 cut(s)	202, 384
ApeKI	GCWGC	2 cut(s)	504, 564
ArsI	GACNNNNNNTTYG	2 cut(s)	102, 134
AsuC2I	CCSGG	2 cut(s)	203, 204
AsuHPI	GGTGA	5 cut(s)	16, 150, 218, 248, 364
AsuII	TTCGAA	1 cut(s)	608
AvaI	CYCGRG	2 cut(s)	202, 384
BbsI	GAAGAC	1 cut(s)	550
BbvI	GCAGC	2 cut(s)	516, 576
BccI	CCATC	5 cut(s)	27, 129, 347, 353, 417
BceAI	ACGGC	2 cut(s)	226, 552
BcnI	CCSGG	2 cut(s)	203, 204
BisI	GCNGC	3 cut(s)	505, 532, 565
BlsI	GCNGC	3 cut(s)	506, 533, 566
Bme1390I	CCNGG	2 cut(s)	203, 204
BmeT110I	CYCGRG	2 cut(s)	202, 384
BmiI	GGNNCC	2 cut(s)	172, 223
BmrFI	CCNGG	2 cut(s)	203, 204
BmsI	GCATC	1 cut(s)	356
BpiI	GAAGAC	1 cut(s)	550
Bpu10I	CCTNAGC	1 cut(s)	341
Bpu14I	TTCGAA	1 cut(s)	608
BpuMI	CCSGG	2 cut(s)	203, 204
BsaAI	YACGTR	1 cut(s)	256
BsaHI	GRCGYC	1 cut(s)	487
BsaJI	CCNNGG	2 cut(s)	202, 304
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 180, 209
Bse3DI	GCAATG	1 cut(s)	499
BseDI	CCNNGG	2 cut(s)	202, 304
BseGI	GGATG	1 cut(s)	371
BseLI	CCNNNNNNNGG	3 cut(s)	33, 180, 209
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	3 cut(s)	231, 342, 355
BseRI	GAGGAG	1 cut(s)	552
BseXI	GCAGC	2 cut(s)	516, 576
BsiHKCI	CYCGRG	2 cut(s)	202, 384
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	3 cut(s)	33, 180, 209
BsmFI	GGGAC	1 cut(s)	74
BsoBI	CYCGRG	2 cut(s)	202, 384
Bsp119I	TTCGAA	1 cut(s)	608
Bsp143I	GATC	1 cut(s)	125
BspACI	CCGC	2 cut(s)	37, 531
BspCNI	CTCAG	3 cut(s)	230, 341, 354
BspLI	GGNNCC	2 cut(s)	172, 223
BspT104I	TTCGAA	1 cut(s)	608
BsrDI	GCAATG	1 cut(s)	499
BssECI	CCNNGG	2 cut(s)	202, 304
BssMI	GATC	1 cut(s)	125
BssNAI	GTATAC	1 cut(s)	253
BssNI	GRCGYC	1 cut(s)	487
BssT1I	CCWWGG	1 cut(s)	304
Bst1107I	GTATAC	1 cut(s)	253
Bst4CI	ACNGT	3 cut(s)	13, 264, 419
BstACI	GRCGYC	1 cut(s)	487
BstBAI	YACGTR	1 cut(s)	256
BstBI	TTCGAA	1 cut(s)	608
BstDEI	CTNAG	3 cut(s)	217, 328, 341
BstF5I	GGATG	1 cut(s)	371
BstKTI	GATC	1 cut(s)	128
BstMBI	GATC	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	201, 202
BstV1I	GCAGC	2 cut(s)	516, 576
BstV2I	GAAGAC	1 cut(s)	550
BstZ17I	GTATAC	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	371
BtsIMutI	CAGTG	1 cut(s)	533
Cfr9I	CCCGGG	1 cut(s)	202
CseI	GACGC	1 cut(s)	476
CviJI	RGCY	7 cut(s)	44, 50, 213, 309, 340, 507, 567
CviKI_1	RGCY	7 cut(s)	44, 50, 213, 309, 340, 507, 567
DdeI	CTNAG	3 cut(s)	217, 328, 341
DpnI	GATC	1 cut(s)	127
DpnII	GATC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	49
Eco88I	CYCGRG	2 cut(s)	202, 384
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaiI	YATR	5 cut(s)	54, 253, 315, 480, 510
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FaqI	GGGAC	1 cut(s)	74
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	3 cut(s)	505, 532, 565
FokI	GGATG	1 cut(s)	378
Fsp4HI	GCNGC	3 cut(s)	505, 532, 565
GluI	GCNGC	3 cut(s)	505, 532, 565
HapII	CCGG	1 cut(s)	203
HgaI	GACGC	1 cut(s)	476
Hin1I	GRCGYC	1 cut(s)	487
HinfI	GANTC	5 cut(s)	144, 239, 270, 387, 633
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	5 cut(s)	16, 150, 218, 248, 364
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	7 cut(s)	80, 130, 350, 554, 601, 626, 638
Hpy188III	TCNNGA	6 cut(s)	91, 151, 174, 187, 225, 384
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	1 cut(s)	492
HpyAV	CCTTC	2 cut(s)	253, 285
HpyCH4III	ACNGT	3 cut(s)	13, 264, 419
HpyCH4IV	ACGT	2 cut(s)	98, 255
HpyCH4V	TGCA	2 cut(s)	504, 564
HpyF3I	CTNAG	3 cut(s)	217, 328, 341
HpySE526I	ACGT	2 cut(s)	98, 255
Hsp92I	GRCGYC	1 cut(s)	487
Kzo9I	GATC	1 cut(s)	125
Lsp1109I	GCAGC	2 cut(s)	516, 576
LweI	GCATC	1 cut(s)	356
MaeII	ACGT	2 cut(s)	98, 255
MaeIII	GTNAC	3 cut(s)	206, 258, 392
MalI	GATC	1 cut(s)	127
MboI	GATC	1 cut(s)	125
MboII	GAAGA	5 cut(s)	42, 153, 465, 525, 555
MluCI	AATT	1 cut(s)	71
MlyI	GAGTC	2 cut(s)	396, 642
MmeI	TCCRAC	1 cut(s)	579
MnlI	CCTC	7 cut(s)	86, 275, 356, 385, 443, 530, 533
MseI	TTAA	5 cut(s)	4, 192, 474, 573, 641
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	2 cut(s)	203, 204
NciI	CCSGG	2 cut(s)	203, 204
NdeII	GATC	1 cut(s)	125
NlaIV	GGNNCC	2 cut(s)	172, 223
NmuCI	GTSAC	2 cut(s)	206, 392
NspV	TTCGAA	1 cut(s)	608
PcsI	WCGNNNNNNNCGW	1 cut(s)	605
PfeI	GAWTC	3 cut(s)	144, 239, 270
PkrI	GCNGC	3 cut(s)	506, 533, 566
PleI	GAGTC	2 cut(s)	395, 641
PpsI	GAGTC	2 cut(s)	395, 641
Ppu21I	YACGTR	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	172, 223
SaqAI	TTAA	5 cut(s)	4, 192, 474, 573, 641
SatI	GCNGC	3 cut(s)	505, 532, 565
Sau3AI	GATC	1 cut(s)	125
SchI	GAGTC	2 cut(s)	396, 642
ScrFI	CCNGG	2 cut(s)	203, 204
SfaNI	GCATC	1 cut(s)	356
SfuI	TTCGAA	1 cut(s)	608
SmaI	CCCGGG	1 cut(s)	204
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	2 cut(s)	37, 531
StyD4I	CCNGG	2 cut(s)	201, 202
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	3 cut(s)	13, 264, 419
TaiI	ACGT	2 cut(s)	101, 258
TaqI	TCGA	2 cut(s)	421, 608
TasI	AATT	1 cut(s)	71
TauI	GCSGC	1 cut(s)	534
TfiI	GAWTC	3 cut(s)	144, 239, 270
Tru1I	TTAA	5 cut(s)	4, 192, 474, 573, 641
Tru9I	TTAA	5 cut(s)	4, 192, 474, 573, 641
TscAI	CASTG	1 cut(s)	533
TseFI	GTSAC	2 cut(s)	206, 392
TseI	GCWGC	2 cut(s)	504, 564
Tsp45I	GTSAC	2 cut(s)	206, 392
TspDTI	ATGAA	2 cut(s)	304, 535
TspMI	CCCGGG	1 cut(s)	202
TspRI	CASTG	1 cut(s)	533
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XmaI	CCCGGG	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.