Rh4AG287400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0005010
Physical Location & Seq
Reverse (-)
60145968 .. 60147748
1781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG287400.1

Sequence Viewer

Length: 1167 bp
ATGGGTGCCTCAAAAATCCAATTGAGAATCAAAATCCCGATGGACGACGACAGCTTCAGACTCCGGGCGGACAAGGTTTTCGGATCCCTCTCTGCGTCGCTCTCCTCGTCTCTCCAACCACCGCAGTCCTCTCCCTGGTCCGTCGCCGGCGCCGAGGTCGAGCGCCGCCAATGGAGGCGCGCCACCGACGCCCCTGACCGAGACGAAACGTCCTGTGCGTCGTCGTTTCAGGGTGAATTTGGAATCGGATCTTCCATAGGCATGGACCCTACTCTGGATTTCGAGGAAGAGGAAGATGAATATGACAAAGTGGCTTCGGGTGCTGAAGCTGTTGATGATGATCGTTTGTTTATGGACGAGGTTACCCACCATGGCTCTTATTTGAACTCTTACAATGTATTGGTTGGTAAGGATTTGCGTGCGAATCACCTGGCTGCCAGGCACAGGCTGAAAGAAGATGATGCTGAAGCTCAGAACCCTAGTTCTACACCAGTGGCTTCTGCTGCACGAGTTAAGCAACAGTTTGCGAAATCACCTGAAGATGGCGGTCAGCCAAAGCCTATACTGAAAAGGAAAGACAATTCCTCGGATAGCAAGTCCCGAAAACGTGTTAGGTTTGACCCTGCTTTTGTAGATCAGAGTGATGGTGAAGAATCTTCCGGAAAAGTTCAAAACTTGGTTTCGGATAATGGTTCTGGATTAACTGCTTCCTGGGTTTCGTTGAAGAAAAAGACGGCTTCTCAGGTTCCTGATTATTTGGTGAATCCTTCAAAGTATACGTGTTATAGTTTTGATTCAACAAGTGAAGTTGATGAAGGTGGCAACACCAAGGCTTGTATGGACTACATTACTCAGGTTGAAAGCTCAGGGTCAGAGATGGAGATGGAGGATGCTTCACCTCAACTTCCCAAGTCTGTGACTTTTGTTCCAAAGAAAGAGACTGTCGATGGTAGCACAAGAACAAAGCAGGACGAGGAAGATGATGATAAGCAGTCCTTAAATATAAAAGGGGTCGCTGTTGGCATTGCAGCTATGGAAGAAAATGAAATCAGTGCGGCAGAGGAGGAAGACAAGTCAGAGCAAAATGCAGCCGTTTTAAGTGATTGTTTATCAAAAAGTGGTCGGAAGTTTCGAACCAAGCCAATGTCAGATGATGAGTCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TSSC4

Protein Analysis

388

Amino Acids

42.43

Weight (kDa)

4.68

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TSSC4 PF15264 242 - 297 7.6e-07 Tumour suppressing sub-chromosomal transferable candidate 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 5, 149
AccI GTMKAC 1 cut(s) 776
AccII CGCG 1 cut(s) 180
AccIII TCCGGA 1 cut(s) 659
AciI CCGC 5 cut(s) 68, 122, 166, 546, 1055
AclWI GGATC 3 cut(s) 78, 91, 256
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 4 cut(s) 40, 345, 486, 558
AcyI GRCGYC 2 cut(s) 150, 189
AfiI CCNNNNNNNGG 4 cut(s) 135, 274, 444, 542
AflIII ACRYGT 2 cut(s) 607, 779
AgsI TTSAA 6 cut(s) 385, 671, 724, 771, 798, 860
AhdI GACNNNNNGTC 1 cut(s) 208
AjnI CCWGG 4 cut(s) 134, 429, 437, 710
AluBI AGCT 5 cut(s) 54, 329, 470, 864, 1031
AluI AGCT 5 cut(s) 54, 329, 470, 864, 1031
Alw26I GTCTC 3 cut(s) 114, 195, 932
AlwI GGATC 3 cut(s) 78, 91, 256
Aor13HI TCCGGA 1 cut(s) 659
ApeKI GCWGC 4 cut(s) 434, 503, 1028, 1088
ApoI RAATTY 1 cut(s) 236
ArsI GACNNNNNNTTYG 4 cut(s) 62, 94, 611, 643
AscI GGCGCGCC 1 cut(s) 178
AspLEI GCGC 4 cut(s) 152, 165, 180, 182
AspS9I GGNCC 2 cut(s) 138, 265
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 6 cut(s) 245, 419, 525, 659, 772, 888
AsuII TTCGAA 1 cut(s) 1132
AvaII GGWCC 2 cut(s) 138, 265
BamHI GGATCC 1 cut(s) 83
BanI GGYRCC 2 cut(s) 5, 149
BauI CACGAG 1 cut(s) 507
BbsI GAAGAC 1 cut(s) 1074
BbvI GCAGC 4 cut(s) 421, 490, 1040, 1100
BccI CCATC 6 cut(s) 34, 536, 638, 871, 877, 941
BceAI ACGGC 2 cut(s) 750, 1076
BciT130I CCWGG 4 cut(s) 136, 431, 439, 712
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 3 cut(s) 114, 195, 932
BfaI CTAG 1 cut(s) 480
BfoI RGCGCY 2 cut(s) 153, 166
BisI GCNGC 6 cut(s) 166, 435, 504, 1029, 1056, 1089
BlsI GCNGC 6 cut(s) 167, 436, 505, 1030, 1057, 1090
Bme1390I CCNGG 5 cut(s) 65, 136, 431, 439, 712
Bme18I GGWCC 2 cut(s) 138, 265
BmeRI GACNNNNNGTC 1 cut(s) 208
BmgT120I GGNCC 2 cut(s) 138, 265
BmiI GGNNCC 5 cut(s) 7, 85, 151, 267, 747
BmrFI CCNGG 5 cut(s) 65, 136, 431, 439, 712
BmsI GCATC 2 cut(s) 451, 880
BpiI GAAGAC 1 cut(s) 1074
Bpu10I CCTNAGC 1 cut(s) 865
Bpu14I TTCGAA 1 cut(s) 1132
BpuMI CCSGG 1 cut(s) 65
BsaAI YACGTR 1 cut(s) 780
BsaBI GATNNNNATC 1 cut(s) 339
BsaHI GRCGYC 2 cut(s) 150, 189
BsaJI CCNNGG 6 cut(s) 134, 153, 370, 585, 711, 828
BsaWI WCCGGW 1 cut(s) 659
Bsc4I CCNNNNNNNGG 4 cut(s) 135, 274, 444, 542
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 491
Bse3DI GCAATG 1 cut(s) 1023
Bse8I GATNNNNATC 1 cut(s) 339
BseAI TCCGGA 1 cut(s) 659
BseBI CCWGG 4 cut(s) 136, 431, 439, 712
BseDI CCNNGG 6 cut(s) 134, 153, 370, 585, 711, 828
BseGI GGATG 1 cut(s) 895
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 4 cut(s) 135, 274, 444, 542
BseMI GCAATG 1 cut(s) 1023
BseMII CTCAG 4 cut(s) 485, 755, 866, 879
BseNI ACTGG 1 cut(s) 491
BsePI GCGCGC 1 cut(s) 178
BseRI GAGGAG 2 cut(s) 94, 1076
BseXI GCAGC 4 cut(s) 421, 490, 1040, 1100
BsgI GTGCAG 1 cut(s) 489
Bsh1236I CGCG 1 cut(s) 180
BshNI GGYRCC 2 cut(s) 5, 149
BsiSI CCGG 3 cut(s) 64, 147, 660
BslFI GGGAC 1 cut(s) 583
BslI CCNNNNNNNGG 4 cut(s) 135, 274, 444, 542
BsmAI GTCTC 3 cut(s) 114, 195, 932
BsmBI CGTCTC 2 cut(s) 114, 195
BsmFI GGGAC 1 cut(s) 583
Bsp119I TTCGAA 1 cut(s) 1132
Bsp13I TCCGGA 1 cut(s) 659
Bsp143I GATC 4 cut(s) 83, 248, 340, 634
Bsp19I CCATGG 1 cut(s) 370
BspACI CCGC 5 cut(s) 68, 122, 166, 546, 1055
BspCNI CTCAG 4 cut(s) 484, 754, 865, 878
BspEI TCCGGA 1 cut(s) 659
BspFNI CGCG 1 cut(s) 180
BspLI GGNNCC 5 cut(s) 7, 85, 151, 267, 747
BspPI GGATC 3 cut(s) 78, 91, 256
BspT104I TTCGAA 1 cut(s) 1132
BspT107I GGYRCC 2 cut(s) 5, 149
BsrDI GCAATG 1 cut(s) 1023
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 1 cut(s) 491
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 6 cut(s) 134, 153, 370, 585, 711, 828
BssHII GCGCGC 1 cut(s) 178
BssMI GATC 4 cut(s) 83, 248, 340, 634
BssNAI GTATAC 1 cut(s) 777
BssNI GRCGYC 2 cut(s) 150, 189
BssSI CACGAG 1 cut(s) 507
BssT1I CCWWGG 2 cut(s) 370, 828
Bst1107I GTATAC 1 cut(s) 777
Bst2BI CACGAG 1 cut(s) 507
Bst2UI CCWGG 4 cut(s) 136, 431, 439, 712
Bst4CI ACNGT 2 cut(s) 522, 943
Bst6I CTCTTC 1 cut(s) 282
BstACI GRCGYC 2 cut(s) 150, 189
BstBAI YACGTR 1 cut(s) 780
BstBI TTCGAA 1 cut(s) 1132
BstC8I GCNNGC 3 cut(s) 148, 180, 420
BstDEI CTNAG 4 cut(s) 471, 741, 852, 865
BstDSI CCRYGG 1 cut(s) 370
BstEII GGTNACC 1 cut(s) 361
BstF5I GGATG 1 cut(s) 895
BstFNI CGCG 1 cut(s) 180
BstH2I RGCGCY 2 cut(s) 153, 166
BstHHI GCGC 4 cut(s) 152, 165, 180, 182
BstKTI GATC 4 cut(s) 86, 251, 343, 637
BstMAI GTCTC 3 cut(s) 114, 195, 932
BstMBI GATC 4 cut(s) 83, 248, 340, 634
BstMWI GCNNNNNNNGC 3 cut(s) 188, 320, 503
BstNI CCWGG 4 cut(s) 136, 431, 439, 712
BstPI GGTNACC 1 cut(s) 361
BstSCI CCNGG 5 cut(s) 63, 134, 429, 437, 710
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 4 cut(s) 421, 490, 1040, 1100
BstV2I GAAGAC 1 cut(s) 1074
BstX2I RGATCY 2 cut(s) 83, 248
BstXI CCANNNNNNTGG 1 cut(s) 262
BstYI RGATCY 2 cut(s) 83, 248
BstZ17I GTATAC 1 cut(s) 777
BtgI CCRYGG 1 cut(s) 370
BtsCI GGATG 1 cut(s) 895
BtsIMutI CAGTG 2 cut(s) 498, 1057
Cac8I GCNNGC 3 cut(s) 148, 180, 420
CfoI GCGC 4 cut(s) 152, 165, 180, 182
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 2 cut(s) 138, 265
CseI GACGC 3 cut(s) 84, 197, 207
CviAII CATG 2 cut(s) 262, 371
DdeI CTNAG 4 cut(s) 471, 741, 852, 865
DinI GGCGCC 1 cut(s) 151
DpnI GATC 4 cut(s) 85, 250, 342, 636
DpnII GATC 4 cut(s) 83, 248, 340, 634
DriI GACNNNNNGTC 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 282
Eam1105I GACNNNNNGTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 282
EciI GGCGGA 1 cut(s) 83
Eco130I CCWWGG 2 cut(s) 370, 828
Eco47I GGWCC 2 cut(s) 138, 265
Eco57I CTGAAG 4 cut(s) 40, 345, 486, 558
Eco91I GGTNACC 1 cut(s) 361
EcoO65I GGTNACC 1 cut(s) 361
EcoRII CCWGG 4 cut(s) 134, 429, 437, 710
EcoT14I CCWWGG 2 cut(s) 370, 828
EgeI GGCGCC 1 cut(s) 151
EheI GGCGCC 1 cut(s) 151
ErhI CCWWGG 2 cut(s) 370, 828
Esp3I CGTCTC 2 cut(s) 114, 195
FaeI CATG 2 cut(s) 265, 374
FalI AAGNNNNNCTT 2 cut(s) 980, 1012
FaqI GGGAC 1 cut(s) 583
FatI CATG 2 cut(s) 261, 370
FblI GTMKAC 1 cut(s) 776
Fnu4HI GCNGC 6 cut(s) 166, 435, 504, 1029, 1056, 1089
FokI GGATG 1 cut(s) 902
Fsp4HI GCNGC 6 cut(s) 166, 435, 504, 1029, 1056, 1089
FspBI CTAG 1 cut(s) 480
GlaI GCGC 4 cut(s) 151, 164, 179, 181
GluI GCNGC 6 cut(s) 166, 435, 504, 1029, 1056, 1089
HaeII RGCGCY 2 cut(s) 153, 166
HapII CCGG 3 cut(s) 64, 147, 660
HgaI GACGC 3 cut(s) 84, 197, 207
HhaI GCGC 4 cut(s) 152, 165, 180, 182
Hin1I GRCGYC 2 cut(s) 150, 189
Hin1II CATG 2 cut(s) 265, 374
Hin6I GCGC 4 cut(s) 150, 163, 178, 180
HinP1I GCGC 4 cut(s) 150, 163, 178, 180
HinfI GANTC 8 cut(s) 27, 60, 243, 424, 653, 763, 794, 1157
HpaII CCGG 3 cut(s) 64, 147, 660
HphI GGTGA 6 cut(s) 245, 419, 525, 659, 772, 888
Hpy166II GTNNAC 1 cut(s) 777
Hpy188III TCNNGA 6 cut(s) 37, 275, 600, 660, 696, 749
Hpy8I GTNNAC 1 cut(s) 777
Hpy99I CGWCG 6 cut(s) 50, 100, 146, 191, 223, 226
HpyAV CCTTC 2 cut(s) 777, 809
HpyCH4III ACNGT 2 cut(s) 522, 943
HpyCH4IV ACGT 3 cut(s) 209, 607, 779
HpyCH4V TGCA 3 cut(s) 506, 1028, 1088
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 320, 503
HpyF3I CTNAG 4 cut(s) 471, 741, 852, 865
HpySE526I ACGT 3 cut(s) 209, 607, 779
Hsp92I GRCGYC 2 cut(s) 150, 189
Hsp92II CATG 2 cut(s) 265, 374
HspAI GCGC 4 cut(s) 150, 163, 178, 180
KasI GGCGCC 1 cut(s) 149
Kpn2I TCCGGA 1 cut(s) 659
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Kzo9I GATC 4 cut(s) 83, 248, 340, 634
Lsp1109I GCAGC 4 cut(s) 421, 490, 1040, 1100
LweI GCATC 2 cut(s) 451, 880
MaeI CTAG 1 cut(s) 480
MaeII ACGT 3 cut(s) 209, 607, 779
MaeIII GTNAC 2 cut(s) 361, 916
MalI GATC 4 cut(s) 85, 250, 342, 636
MboI GATC 4 cut(s) 83, 248, 340, 634
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 2 cut(s) 83, 248
MluCI AATT 3 cut(s) 20, 236, 580
Mly113I GGCGCC 1 cut(s) 150
MlyI GAGTC 2 cut(s) 54, 1166
MmeI TCCRAC 2 cut(s) 139, 1103
MreI CGCCGGCG 1 cut(s) 146
MroI TCCGGA 1 cut(s) 659
MroNI GCCGGC 1 cut(s) 146
MseI TTAA 5 cut(s) 513, 701, 998, 1097, 1165
MslI CAYNNNNRTG 1 cut(s) 260
MspI CCGG 3 cut(s) 64, 147, 660
MspR9I CCNGG 5 cut(s) 65, 136, 431, 439, 712
MunI CAATTG 1 cut(s) 20
MvaI CCWGG 4 cut(s) 136, 431, 439, 712
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 3 cut(s) 188, 320, 503
NaeI GCCGGC 1 cut(s) 148
NarI GGCGCC 1 cut(s) 150
NciI CCSGG 1 cut(s) 65
NcoI CCATGG 1 cut(s) 370
NdeII GATC 4 cut(s) 83, 248, 340, 634
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 2 cut(s) 265, 374
NlaIV GGNNCC 5 cut(s) 7, 85, 151, 267, 747
NmeAIII GCCGAG 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 916
NspV TTCGAA 1 cut(s) 1132
PalAI GGCGCGCC 1 cut(s) 178
PauI GCGCGC 1 cut(s) 178
PcsI WCGNNNNNNNCGW 4 cut(s) 104, 150, 215, 1129
PdiI GCCGGC 1 cut(s) 148
PfeI GAWTC 6 cut(s) 27, 243, 424, 653, 763, 794
PkrI GCNGC 6 cut(s) 167, 436, 505, 1030, 1057, 1090
PleI GAGTC 2 cut(s) 54, 1165
PluTI GGCGCC 1 cut(s) 153
PpsI GAGTC 2 cut(s) 54, 1165
Ppu21I YACGTR 1 cut(s) 780
Psp6I CCWGG 4 cut(s) 134, 429, 437, 710
PspEI GGTNACC 1 cut(s) 361
PspGI CCWGG 4 cut(s) 134, 429, 437, 710
PspN4I GGNNCC 5 cut(s) 7, 85, 151, 267, 747
PspPI GGNCC 2 cut(s) 138, 265
PsuI RGATCY 2 cut(s) 83, 248
PteI GCGCGC 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 260
SaqAI TTAA 5 cut(s) 513, 701, 998, 1097, 1165
SatI GCNGC 6 cut(s) 166, 435, 504, 1029, 1056, 1089
Sau3AI GATC 4 cut(s) 83, 248, 340, 634
Sau96I GGNCC 2 cut(s) 138, 265
SchI GAGTC 2 cut(s) 54, 1166
ScrFI CCNGG 5 cut(s) 65, 136, 431, 439, 712
SfaNI GCATC 2 cut(s) 451, 880
SfoI GGCGCC 1 cut(s) 151
SfuI TTCGAA 1 cut(s) 1132
SgrAI CRCCGGYG 1 cut(s) 146
SgsI GGCGCGCC 1 cut(s) 178
SinI GGWCC 2 cut(s) 138, 265
SmiMI CAYNNNNRTG 1 cut(s) 260
Sse9I AATT 3 cut(s) 20, 236, 580
SsiI CCGC 5 cut(s) 68, 122, 166, 546, 1055
SspDI GGCGCC 1 cut(s) 149
SspMI CTAG 1 cut(s) 480
StyD4I CCNGG 5 cut(s) 63, 134, 429, 437, 710
StyI CCWWGG 2 cut(s) 370, 828
TaaI ACNGT 2 cut(s) 522, 943
TaiI ACGT 3 cut(s) 212, 610, 782
TaqI TCGA 4 cut(s) 159, 282, 945, 1132
TaqII GACCGA 1 cut(s) 213
TasI AATT 3 cut(s) 20, 236, 580
TauI GCSGC 2 cut(s) 168, 1058
TfiI GAWTC 6 cut(s) 27, 243, 424, 653, 763, 794
Tru1I TTAA 5 cut(s) 513, 701, 998, 1097, 1165
Tru9I TTAA 5 cut(s) 513, 701, 998, 1097, 1165
TscAI CASTG 2 cut(s) 498, 1057
TseFI GTSAC 1 cut(s) 916
TseI GCWGC 4 cut(s) 434, 503, 1028, 1088
Tsp45I GTSAC 1 cut(s) 916
TspDTI ATGAA 3 cut(s) 312, 828, 1059
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 2 cut(s) 498, 1057
VpaK11BI GGWCC 2 cut(s) 138, 265
XapI RAATTY 1 cut(s) 236
XcmI CCANNNNNNNNNTGG 1 cut(s) 835
XmiI GTMKAC 1 cut(s) 776
XspI CTAG 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.