Rh6DG095000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005010
Physical Location & Seq
Forward (+)
11483657 .. 11496297
12641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG095000.1

Sequence Viewer

Length: 705 bp
ATGTACCGTCGCAAGATTCTTCCGGCATCACGAGTCTTCGGCATATCAATGGAGGCGACGGGGTGCAAAGACTTAATAGGTTCCTTCTCAGTTCTCACTGATGCAAAGTCACAAGAAGAGGAAGATGAATATGACAAAGTGGCTTCGGGTGCTGAAGCTGTTGATGATGATCGTTTGTTTATGGACGATGTTACCAACCATGGCTCTTATTTGAACTCTTACGATGTATTGGTTGGTAAGGATTCGCGTGCGAATCACCTGGCTTCCAGGCACAGGCTGAAAGAAGATGATGCTGAAGCTCAGAACCCTAGTTCTACACCAGTGGCTTCTGCTGCACTAGTTAAGCAACAGTTTGCGAAATCACCTGAAGATGGCGGTCAGCCAAAGCCTATACTGAAAAGGAAAGACAATTCCTCGGATAGCAAGTCCCGAAAACGTGTTAGGTTTGACCCTGCTTTTGTAGATCAGAGTGACGGTGAAGAATCATCAGGAAAAGTTCAAAACTTGCTTCCGGATATTGGTTCTGGATTAACTGCTTCCCGGGTTTCTTTGAAGAAAAAGACGGCTTCTCAGGTTCCTGATTATTTGGTGAATCCTTCAAAGTATACGTGTTACAGTTTTGATTCAACAAGTGAAGTTGATGAAGGTGGCAACACCAAGGCTTGTATGGACTACATTACTCAAATTACTCAAATTTGCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TSSC4

Protein Analysis

234

Amino Acids

25.62

Weight (kDa)

5.22

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TSSC4 PF15264 186 - 227 1.3e-06 Tumour suppressing sub-chromosomal transferable candidate 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 605
AccII CGCG 1 cut(s) 247
AccIII TCCGGA 1 cut(s) 511
AciI CCGC 1 cut(s) 375
AcsI RAATTY 1 cut(s) 693
AcuI CTGAAG 3 cut(s) 174, 315, 387
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 273, 371, 518
AflIII ACRYGT 2 cut(s) 436, 608
AgsI TTSAA 5 cut(s) 214, 500, 553, 600, 627
AhlI ACTAGT 1 cut(s) 337
AjnI CCWGG 2 cut(s) 258, 266
AluBI AGCT 2 cut(s) 158, 299
AluI AGCT 2 cut(s) 158, 299
Ama87I CYCGRG 1 cut(s) 540
Aor13HI TCCGGA 1 cut(s) 511
ApeKI GCWGC 1 cut(s) 332
ApoI RAATTY 1 cut(s) 693
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
AsuC2I CCSGG 2 cut(s) 541, 542
AsuHPI GGTGA 4 cut(s) 248, 354, 488, 601
AvaI CYCGRG 1 cut(s) 540
BauI CACGAG 1 cut(s) 30
BbsI GAAGAC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 319
BccI CCATC 1 cut(s) 365
BceAI ACGGC 1 cut(s) 579
BciT130I CCWGG 2 cut(s) 260, 268
BcnI CCSGG 2 cut(s) 541, 542
BcuI ACTAGT 1 cut(s) 337
BfaI CTAG 2 cut(s) 309, 338
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
Bme1390I CCNGG 4 cut(s) 260, 268, 541, 542
BmeT110I CYCGRG 1 cut(s) 540
BmiI GGNNCC 2 cut(s) 82, 576
BmrFI CCNGG 4 cut(s) 260, 268, 541, 542
BmsI GCATC 3 cut(s) 35, 91, 280
BpiI GAAGAC 1 cut(s) 28
BpuMI CCSGG 2 cut(s) 541, 542
BsaAI YACGTR 1 cut(s) 609
BsaBI GATNNNNATC 1 cut(s) 168
BsaJI CCNNGG 4 cut(s) 199, 414, 540, 657
BsaWI WCCGGW 1 cut(s) 511
Bsc4I CCNNNNNNNGG 3 cut(s) 273, 371, 518
Bse1I ACTGG 1 cut(s) 320
Bse8I GATNNNNATC 1 cut(s) 168
BseAI TCCGGA 1 cut(s) 511
BseBI CCWGG 2 cut(s) 260, 268
BseDI CCNNGG 4 cut(s) 199, 414, 540, 657
BseJI GATNNNNATC 1 cut(s) 168
BseLI CCNNNNNNNGG 3 cut(s) 273, 371, 518
BseMII CTCAG 3 cut(s) 102, 314, 584
BseNI ACTGG 1 cut(s) 320
BseXI GCAGC 1 cut(s) 319
BsgI GTGCAG 1 cut(s) 318
Bsh1236I CGCG 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 540
BsiSI CCGG 3 cut(s) 23, 512, 541
BslFI GGGAC 1 cut(s) 412
BslI CCNNNNNNNGG 3 cut(s) 273, 371, 518
BsmFI GGGAC 1 cut(s) 412
BsoBI CYCGRG 1 cut(s) 540
Bsp13I TCCGGA 1 cut(s) 511
Bsp143I GATC 2 cut(s) 169, 463
Bsp19I CCATGG 1 cut(s) 199
BspACI CCGC 1 cut(s) 375
BspCNI CTCAG 3 cut(s) 101, 313, 583
BspEI TCCGGA 1 cut(s) 511
BspFNI CGCG 1 cut(s) 247
BspLI GGNNCC 2 cut(s) 82, 576
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 4 cut(s) 199, 414, 540, 657
BssMI GATC 2 cut(s) 169, 463
BssNAI GTATAC 1 cut(s) 606
BssSI CACGAG 1 cut(s) 30
BssT1I CCWWGG 2 cut(s) 199, 657
Bst1107I GTATAC 1 cut(s) 606
Bst2BI CACGAG 1 cut(s) 30
Bst2UI CCWGG 2 cut(s) 260, 268
Bst4CI ACNGT 4 cut(s) 8, 351, 476, 617
Bst6I CTCTTC 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 609
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 3 cut(s) 88, 300, 570
BstDSI CCRYGG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 247
BstKTI GATC 2 cut(s) 172, 466
BstMBI GATC 2 cut(s) 169, 463
BstMWI GCNNNNNNNGC 2 cut(s) 149, 332
BstNI CCWGG 2 cut(s) 260, 268
BstSCI CCNGG 4 cut(s) 258, 266, 539, 540
BstUI CGCG 1 cut(s) 247
BstV1I GCAGC 1 cut(s) 319
BstV2I GAAGAC 1 cut(s) 28
BstZ17I GTATAC 1 cut(s) 606
BtgI CCRYGG 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 96, 327
Cac8I GCNNGC 1 cut(s) 249
Cfr9I CCCGGG 1 cut(s) 540
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 200
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 3 cut(s) 88, 300, 570
DpnI GATC 2 cut(s) 171, 465
DpnII GATC 2 cut(s) 169, 463
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco130I CCWWGG 2 cut(s) 199, 657
Eco57I CTGAAG 3 cut(s) 174, 315, 387
Eco88I CYCGRG 1 cut(s) 540
EcoRII CCWGG 2 cut(s) 258, 266
EcoT14I CCWWGG 2 cut(s) 199, 657
ErhI CCWWGG 2 cut(s) 199, 657
FaeI CATG 1 cut(s) 203
FaiI YATR 8 cut(s) 44, 132, 182, 201, 392, 606, 668, 703
FaqI GGGAC 1 cut(s) 412
FatI CATG 1 cut(s) 199
FblI GTMKAC 1 cut(s) 605
Fnu4HI GCNGC 1 cut(s) 333
Fsp4HI GCNGC 1 cut(s) 333
FspBI CTAG 2 cut(s) 309, 338
GluI GCNGC 1 cut(s) 333
HapII CCGG 3 cut(s) 23, 512, 541
Hin1II CATG 1 cut(s) 203
HinfI GANTC 7 cut(s) 16, 33, 242, 253, 482, 592, 623
HpaII CCGG 3 cut(s) 23, 512, 541
HphI GGTGA 4 cut(s) 248, 354, 488, 601
Hpy166II GTNNAC 1 cut(s) 606
Hpy188I TCNGA 3 cut(s) 303, 418, 468
Hpy188III TCNNGA 6 cut(s) 30, 429, 489, 512, 525, 578
Hpy8I GTNNAC 1 cut(s) 606
Hpy99I CGWCG 2 cut(s) 12, 61
HpyAV CCTTC 3 cut(s) 94, 606, 638
HpyCH4III ACNGT 4 cut(s) 8, 351, 476, 617
HpyCH4IV ACGT 2 cut(s) 436, 608
HpyCH4V TGCA 3 cut(s) 66, 104, 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 332
HpyF3I CTNAG 3 cut(s) 88, 300, 570
HpySE526I ACGT 2 cut(s) 436, 608
Hsp92II CATG 1 cut(s) 203
Kpn2I TCCGGA 1 cut(s) 511
Kzo9I GATC 2 cut(s) 169, 463
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 3 cut(s) 35, 91, 280
MaeI CTAG 2 cut(s) 309, 338
MaeII ACGT 2 cut(s) 436, 608
MaeIII GTNAC 4 cut(s) 108, 190, 470, 611
MalI GATC 2 cut(s) 171, 465
MboI GATC 2 cut(s) 169, 463
MboII GAAGA 8 cut(s) 11, 28, 128, 134, 296, 380, 491, 565
MluCI AATT 3 cut(s) 409, 684, 693
MlyI GAGTC 1 cut(s) 42
MnlI CCTC 3 cut(s) 46, 112, 424
MroI TCCGGA 1 cut(s) 511
MseI TTAA 3 cut(s) 74, 342, 530
MslI CAYNNNNRTG 1 cut(s) 47
MspI CCGG 3 cut(s) 23, 512, 541
MspR9I CCNGG 4 cut(s) 260, 268, 541, 542
MvaI CCWGG 2 cut(s) 260, 268
MvnI CGCG 1 cut(s) 247
MwoI GCNNNNNNNGC 2 cut(s) 149, 332
NciI CCSGG 2 cut(s) 541, 542
NcoI CCATGG 1 cut(s) 199
NdeII GATC 2 cut(s) 169, 463
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 2 cut(s) 82, 576
NmuCI GTSAC 2 cut(s) 108, 470
PfeI GAWTC 6 cut(s) 16, 242, 253, 482, 592, 623
PkrI GCNGC 1 cut(s) 334
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
Ppu21I YACGTR 1 cut(s) 609
Psp6I CCWGG 2 cut(s) 258, 266
PspGI CCWGG 2 cut(s) 258, 266
PspN4I GGNNCC 2 cut(s) 82, 576
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 3 cut(s) 74, 342, 530
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 2 cut(s) 169, 463
SchI GAGTC 1 cut(s) 42
ScrFI CCNGG 4 cut(s) 260, 268, 541, 542
SfaNI GCATC 3 cut(s) 35, 91, 280
SmaI CCCGGG 1 cut(s) 542
SmiMI CAYNNNNRTG 1 cut(s) 47
SpeI ACTAGT 1 cut(s) 337
Sse9I AATT 3 cut(s) 409, 684, 693
SsiI CCGC 1 cut(s) 375
SspMI CTAG 2 cut(s) 309, 338
StyD4I CCNGG 4 cut(s) 258, 266, 539, 540
StyI CCWWGG 2 cut(s) 199, 657
TaaI ACNGT 4 cut(s) 8, 351, 476, 617
TaiI ACGT 2 cut(s) 439, 611
TasI AATT 3 cut(s) 409, 684, 693
TfiI GAWTC 6 cut(s) 16, 242, 253, 482, 592, 623
Tru1I TTAA 3 cut(s) 74, 342, 530
Tru9I TTAA 3 cut(s) 74, 342, 530
TscAI CASTG 2 cut(s) 103, 327
TseFI GTSAC 2 cut(s) 108, 470
TseI GCWGC 1 cut(s) 332
Tsp45I GTSAC 2 cut(s) 108, 470
TspDTI ATGAA 2 cut(s) 141, 657
TspMI CCCGGG 1 cut(s) 540
TspRI CASTG 2 cut(s) 103, 327
XapI RAATTY 1 cut(s) 693
XcmI CCANNNNNNNNNTGG 1 cut(s) 664
XmaI CCCGGG 1 cut(s) 540
XmiI GTMKAC 1 cut(s) 605
XspI CTAG 2 cut(s) 309, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.