Rh6DG122200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005010
Physical Location & Seq
Forward (+)
17151980 .. 17160456
8477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG122200.1

Sequence Viewer

Length: 891 bp
ATGTATAAGGGGCGGCAGGGAGATATGACCCCTACGCATACATTGTTCATAGAAATTGATCGGGAAGAGGAAGATGAATATGACAAAGTGGCTTCGGGTGCTAAAGCTGTTGATGATGATCGTTTGTTTATGGACGATGTTACCAACCATGGCTCTTATTTGAACTCTTACAATGTATTGGTTGGTAAGGATTCGCGTGCGAATCACCTGGCTGCCAGGCACAGGCTGAAAGAAGATGATGCTGAAGCTCAGAACCCTAGTTCTACACCAGTGGCTTCTGCTGCACTAGTTAAGCAACAGTTTGCGAAATCACCTGAAGATGGCGGTCAGCCAAAGCCTATACTGATTCAACAAGTGAAGTTGATGAAGGTGGCAACACCAAGGCTTATCGATATAAAGGTTCCTGGAGGGGGAATAGAGCTAGAGGAAGAGTTTGGGAAAATGGGAGAGAGCCAGAAGCAGTTCCAGATGGGAACCATTGAGGCTTTGAGTTTGTCGTACAAAGTTGGAACTTTTCCCCTGCATATTTGCTTGCTCTTAGTAACAAATGTAGGTGGCACTGTGAGATGCTTCAAGGCTTTCCAAAGAGCAAAACATGAGCATGAGGCATTAAAGAGGCAGCTTGAAACTTATTTCCAGGAATCAAGTGAGGAGGAGAGGGAGCATGCTGTGAAATTGATGGAATACCAGAATAAGCTTGGTGGAAGGGTGAAAAGTTGTTTTTTTAAAAAGTTTGCAGAGGACGACGGCGAGACGAAGCATCTAGAAGCCCTAGAAGGAGCCCAAACGCGCCTCCGCCTCTTCCAGATCGACCTCCTCGACTACGATTCCATCTCCGCCGTAGTCGAAGACTTTTATAAGAGTAAGAGTTTTCAAGACAACCAAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TSSC4

Protein Analysis

296

Amino Acids

33.44

Weight (kDa)

5.48

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin PF00210 206 - 239 2.6e-06 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 858
AccII CGCG 2 cut(s) 196, 790
AciI CCGC 4 cut(s) 13, 324, 796, 837
AcuI CTGAAG 2 cut(s) 264, 336
AfaI GTAC 1 cut(s) 500
AfiI CCNNNNNNNGG 3 cut(s) 222, 320, 410
AgsI TTSAA 5 cut(s) 163, 350, 574, 626, 875
AhlI ACTAGT 1 cut(s) 286
AjnI CCWGG 4 cut(s) 207, 215, 403, 636
AluBI AGCT 5 cut(s) 107, 248, 421, 622, 697
AluI AGCT 5 cut(s) 107, 248, 421, 622, 697
Alw26I GTCTC 1 cut(s) 746
ApeKI GCWGC 3 cut(s) 212, 281, 619
Asp700I GAANNNNTTC 1 cut(s) 461
AspLEI GCGC 1 cut(s) 792
AsuHPI GGTGA 3 cut(s) 197, 303, 721
BanII GRGCYC 1 cut(s) 784
BbsI GAAGAC 1 cut(s) 855
BbvI GCAGC 3 cut(s) 199, 268, 631
BccI CCATC 4 cut(s) 314, 463, 673, 839
BceAI ACGGC 2 cut(s) 763, 824
BciT130I CCWGG 4 cut(s) 209, 217, 405, 638
BcoDI GTCTC 1 cut(s) 746
BcuI ACTAGT 1 cut(s) 286
BfaI CTAG 5 cut(s) 258, 287, 422, 764, 773
BisI GCNGC 4 cut(s) 14, 213, 282, 620
BlsI GCNGC 4 cut(s) 15, 214, 283, 621
Bme1390I CCNGG 4 cut(s) 209, 217, 405, 638
BmiI GGNNCC 3 cut(s) 402, 475, 781
BmrFI CCNGG 4 cut(s) 209, 217, 405, 638
BmsI GCATC 3 cut(s) 229, 557, 769
BpiI GAAGAC 1 cut(s) 855
BpmI CTGGAG 1 cut(s) 426
Bsa29I ATCGAT 1 cut(s) 390
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 148, 380
Bsc4I CCNNNNNNNGG 3 cut(s) 222, 320, 410
Bse1I ACTGG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 117
BseBI CCWGG 4 cut(s) 209, 217, 405, 638
BseCI ATCGAT 1 cut(s) 390
BseDI CCNNGG 2 cut(s) 148, 380
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 3 cut(s) 222, 320, 410
BseMII CTCAG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 3 cut(s) 665, 668, 806
BseXI GCAGC 3 cut(s) 199, 268, 631
BsgI GTGCAG 1 cut(s) 267
Bsh1236I CGCG 2 cut(s) 196, 790
BshVI ATCGAT 1 cut(s) 390
BslI CCNNNNNNNGG 3 cut(s) 222, 320, 410
BsmAI GTCTC 1 cut(s) 746
BsmBI CGTCTC 1 cut(s) 746
Bsp1286I GDGCHC 1 cut(s) 784
Bsp143I GATC 3 cut(s) 58, 118, 807
Bsp19I CCATGG 1 cut(s) 148
BspACI CCGC 4 cut(s) 13, 324, 796, 837
BspCNI CTCAG 1 cut(s) 262
BspDI ATCGAT 1 cut(s) 390
BspFNI CGCG 2 cut(s) 196, 790
BspLI GGNNCC 3 cut(s) 402, 475, 781
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 148, 380
BssMI GATC 3 cut(s) 58, 118, 807
BssT1I CCWWGG 2 cut(s) 148, 380
Bst2UI CCWGG 4 cut(s) 209, 217, 405, 638
Bst4CI ACNGT 2 cut(s) 300, 562
Bst6I CTCTTC 3 cut(s) 60, 423, 806
BstC8I GCNNGC 3 cut(s) 198, 533, 666
BstDEI CTNAG 3 cut(s) 249, 538, 888
BstDSI CCRYGG 1 cut(s) 148
BstFNI CGCG 2 cut(s) 196, 790
BstHHI GCGC 1 cut(s) 792
BstKTI GATC 3 cut(s) 61, 121, 810
BstMAI GTCTC 1 cut(s) 746
BstMBI GATC 3 cut(s) 58, 118, 807
BstMWI GCNNNNNNNGC 2 cut(s) 98, 281
BstNI CCWGG 4 cut(s) 209, 217, 405, 638
BstNSI RCATGY 1 cut(s) 668
BstSCI CCNGG 4 cut(s) 207, 215, 403, 636
BstUI CGCG 2 cut(s) 196, 790
BstV1I GCAGC 3 cut(s) 199, 268, 631
BstV2I GAAGAC 1 cut(s) 855
Bsu15I ATCGAT 1 cut(s) 390
BsuTUI ATCGAT 1 cut(s) 390
BtgI CCRYGG 1 cut(s) 148
BtsIMutI CAGTG 2 cut(s) 276, 558
Cac8I GCNNGC 3 cut(s) 198, 533, 666
CfoI GCGC 1 cut(s) 792
ClaI ATCGAT 1 cut(s) 390
Csp6I GTAC 1 cut(s) 499
CviAII CATG 4 cut(s) 149, 596, 602, 665
CviQI GTAC 1 cut(s) 499
DdeI CTNAG 3 cut(s) 249, 538, 888
DpnI GATC 3 cut(s) 60, 120, 809
DpnII GATC 3 cut(s) 58, 118, 807
DraI TTTAAA 1 cut(s) 727
Eam1104I CTCTTC 3 cut(s) 60, 423, 806
EarI CTCTTC 3 cut(s) 60, 423, 806
EciI GGCGGA 2 cut(s) 785, 826
Eco130I CCWWGG 2 cut(s) 148, 380
Eco24I GRGCYC 1 cut(s) 784
Eco57I CTGAAG 2 cut(s) 264, 336
EcoRII CCWGG 4 cut(s) 207, 215, 403, 636
EcoT14I CCWWGG 2 cut(s) 148, 380
EcoT38I GRGCYC 1 cut(s) 784
ErhI CCWWGG 2 cut(s) 148, 380
Esp3I CGTCTC 1 cut(s) 746
FaeI CATG 4 cut(s) 152, 599, 605, 668
FatI CATG 4 cut(s) 148, 595, 601, 664
Fnu4HI GCNGC 4 cut(s) 14, 213, 282, 620
FriOI GRGCYC 1 cut(s) 784
Fsp4HI GCNGC 4 cut(s) 14, 213, 282, 620
FspBI CTAG 5 cut(s) 258, 287, 422, 764, 773
GlaI GCGC 1 cut(s) 791
GluI GCNGC 4 cut(s) 14, 213, 282, 620
GsuI CTGGAG 1 cut(s) 426
HhaI GCGC 1 cut(s) 792
Hin1II CATG 4 cut(s) 152, 599, 605, 668
Hin6I GCGC 1 cut(s) 790
HinP1I GCGC 1 cut(s) 790
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 5 cut(s) 191, 202, 346, 641, 827
HphI GGTGA 3 cut(s) 197, 303, 721
Hpy188I TCNGA 1 cut(s) 252
Hpy188III TCNNGA 5 cut(s) 62, 466, 764, 805, 875
Hpy99I CGWCG 1 cut(s) 749
HpyAV CCTTC 3 cut(s) 361, 699, 770
HpyCH4III ACNGT 2 cut(s) 300, 562
HpyCH4V TGCA 3 cut(s) 284, 523, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 281
HpyF3I CTNAG 3 cut(s) 249, 538, 888
Hsp92II CATG 4 cut(s) 152, 599, 605, 668
HspAI GCGC 1 cut(s) 790
Kzo9I GATC 3 cut(s) 58, 118, 807
LmnI GCTCC 2 cut(s) 661, 779
Lsp1109I GCAGC 3 cut(s) 199, 268, 631
LweI GCATC 3 cut(s) 229, 557, 769
MaeI CTAG 5 cut(s) 258, 287, 422, 764, 773
MaeIII GTNAC 2 cut(s) 139, 541
MalI GATC 3 cut(s) 60, 120, 809
MboI GATC 3 cut(s) 58, 118, 807
MboII GAAGA 7 cut(s) 77, 83, 245, 329, 440, 793, 860
MhlI GDGCHC 1 cut(s) 784
MluCI AATT 2 cut(s) 54, 674
MmeI TCCRAC 1 cut(s) 487
MroXI GAANNNNTTC 1 cut(s) 461
MseI TTAA 3 cut(s) 291, 611, 726
MslI CAYNNNNRTG 1 cut(s) 600
MspR9I CCNGG 4 cut(s) 209, 217, 405, 638
MvaI CCWGG 4 cut(s) 209, 217, 405, 638
MvnI CGCG 2 cut(s) 196, 790
MwoI GCNNNNNNNGC 2 cut(s) 98, 281
NcoI CCATGG 1 cut(s) 148
NdeII GATC 3 cut(s) 58, 118, 807
NlaIII CATG 4 cut(s) 152, 599, 605, 668
NlaIV GGNNCC 3 cut(s) 402, 475, 781
NspI RCATGY 1 cut(s) 668
PaeI GCATGC 1 cut(s) 668
PcsI WCGNNNNNNNCGW 1 cut(s) 816
PdmI GAANNNNTTC 1 cut(s) 461
PfeI GAWTC 5 cut(s) 191, 202, 346, 641, 827
PfoI TCCNGGA 2 cut(s) 403, 636
PkrI GCNGC 4 cut(s) 15, 214, 283, 621
PsiI TTATAA 1 cut(s) 858
Psp6I CCWGG 4 cut(s) 207, 215, 403, 636
PspGI CCWGG 4 cut(s) 207, 215, 403, 636
PspN4I GGNNCC 3 cut(s) 402, 475, 781
RsaI GTAC 1 cut(s) 500
RsaNI GTAC 1 cut(s) 499
RseI CAYNNNNRTG 1 cut(s) 600
SaqAI TTAA 3 cut(s) 291, 611, 726
SatI GCNGC 4 cut(s) 14, 213, 282, 620
Sau3AI GATC 3 cut(s) 58, 118, 807
ScrFI CCNGG 4 cut(s) 209, 217, 405, 638
SduI GDGCHC 1 cut(s) 784
SfaNI GCATC 3 cut(s) 229, 557, 769
SmiMI CAYNNNNRTG 1 cut(s) 600
SpeI ACTAGT 1 cut(s) 286
SphI GCATGC 1 cut(s) 668
Sse9I AATT 2 cut(s) 54, 674
SsiI CCGC 4 cut(s) 13, 324, 796, 837
SspMI CTAG 5 cut(s) 258, 287, 422, 764, 773
StyD4I CCNGG 4 cut(s) 207, 215, 403, 636
StyI CCWWGG 2 cut(s) 148, 380
TaaI ACNGT 2 cut(s) 300, 562
TaqI TCGA 4 cut(s) 390, 810, 819, 846
TasI AATT 2 cut(s) 54, 674
TauI GCSGC 1 cut(s) 16
TfiI GAWTC 5 cut(s) 191, 202, 346, 641, 827
Tru1I TTAA 3 cut(s) 291, 611, 726
Tru9I TTAA 3 cut(s) 291, 611, 726
TscAI CASTG 2 cut(s) 276, 565
TseI GCWGC 3 cut(s) 212, 281, 619
TspDTI ATGAA 3 cut(s) 37, 90, 380
TspRI CASTG 2 cut(s) 276, 565
XbaI TCTAGA 1 cut(s) 763
XceI RCATGY 1 cut(s) 668
XcmI CCANNNNNNNNNTGG 1 cut(s) 695
XmnI GAANNNNTTC 1 cut(s) 461
XspI CTAG 5 cut(s) 258, 287, 422, 764, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.