Rmu_sc0008629.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008629.1
OG0005010
Physical Location & Seq
Reverse (-)
1 .. 474
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008629.1_g000001.1.cds

Sequence Viewer

Length: 243 bp
atggacgacagcttcagactccgggcggacaaggttttcggatccctctctgcgtcgctctcctcgtctctccaaccaccgcagtcctctccctggtccgtcgccggcgccgaggtcgagcgccgccaatggaggcgcgccaccgacgcccctgaccgagacgaaacgccctgtgcgtcgtcgtttcagggtgaatttggaatcggatcttccataggcatggaccctactctggatttcgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TSSC4

Protein Analysis

81

Amino Acids

8.83

Weight (kDa)

4.51

Isoelectric Point (pI)

57.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AccII CGCG 1 cut(s) 138
AciI CCGC 3 cut(s) 26, 80, 124
AclWI GGATC 3 cut(s) 36, 49, 214
AcsI RAATTY 1 cut(s) 194
AcyI GRCGYC 2 cut(s) 108, 147
AfiI CCNNNNNNNGG 2 cut(s) 93, 232
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw26I GTCTC 2 cut(s) 72, 153
AlwI GGATC 3 cut(s) 36, 49, 214
ApoI RAATTY 1 cut(s) 194
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
AscI GGCGCGCC 1 cut(s) 136
AspLEI GCGC 4 cut(s) 110, 123, 138, 140
AspS9I GGNCC 2 cut(s) 96, 223
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 2 cut(s) 96, 223
BamHI GGATCC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 94
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 2 cut(s) 72, 153
BfoI RGCGCY 2 cut(s) 111, 124
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
Bme1390I CCNGG 2 cut(s) 23, 94
Bme18I GGWCC 2 cut(s) 96, 223
BmgT120I GGNCC 2 cut(s) 96, 223
BmiI GGNNCC 3 cut(s) 43, 109, 225
BmrFI CCNGG 2 cut(s) 23, 94
BpuMI CCSGG 1 cut(s) 23
BsaHI GRCGYC 2 cut(s) 108, 147
BsaJI CCNNGG 2 cut(s) 92, 111
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 232
Bse118I RCCGGY 1 cut(s) 104
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 2 cut(s) 92, 111
BseLI CCNNNNNNNGG 2 cut(s) 93, 232
BsePI GCGCGC 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 52
Bsh1236I CGCG 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 107
BsiSI CCGG 2 cut(s) 22, 105
BslI CCNNNNNNNGG 2 cut(s) 93, 232
BsmAI GTCTC 2 cut(s) 72, 153
BsmBI CGTCTC 2 cut(s) 72, 153
Bsp143I GATC 2 cut(s) 41, 206
BspACI CCGC 3 cut(s) 26, 80, 124
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 3 cut(s) 43, 109, 225
BspPI GGATC 3 cut(s) 36, 49, 214
BspT107I GGYRCC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 92, 111
BssHII GCGCGC 1 cut(s) 136
BssMI GATC 2 cut(s) 41, 206
BssNI GRCGYC 2 cut(s) 108, 147
Bst2UI CCWGG 1 cut(s) 94
BstACI GRCGYC 2 cut(s) 108, 147
BstC8I GCNNGC 2 cut(s) 106, 138
BstFNI CGCG 1 cut(s) 138
BstH2I RGCGCY 2 cut(s) 111, 124
BstHHI GCGC 4 cut(s) 110, 123, 138, 140
BstKTI GATC 2 cut(s) 44, 209
BstMAI GTCTC 2 cut(s) 72, 153
BstMBI GATC 2 cut(s) 41, 206
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 2 cut(s) 21, 92
BstUI CGCG 1 cut(s) 138
BstX2I RGATCY 2 cut(s) 41, 206
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 2 cut(s) 41, 206
Cac8I GCNNGC 2 cut(s) 106, 138
CfoI GCGC 4 cut(s) 110, 123, 138, 140
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 2 cut(s) 96, 223
CseI GACGC 3 cut(s) 42, 155, 165
CviAII CATG 1 cut(s) 220
CviJI RGCY 1 cut(s) 12
CviKI_1 RGCY 1 cut(s) 12
DinI GGCGCC 1 cut(s) 109
DpnI GATC 2 cut(s) 43, 208
DpnII GATC 2 cut(s) 41, 206
EciI GGCGGA 1 cut(s) 41
Eco47I GGWCC 2 cut(s) 96, 223
EcoRII CCWGG 1 cut(s) 92
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
Esp3I CGTCTC 2 cut(s) 72, 153
FaeI CATG 1 cut(s) 223
FaiI YATR 2 cut(s) 215, 221
FatI CATG 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 124
GlaI GCGC 4 cut(s) 109, 122, 137, 139
GluI GCNGC 1 cut(s) 124
HaeII RGCGCY 2 cut(s) 111, 124
HapII CCGG 2 cut(s) 22, 105
HgaI GACGC 3 cut(s) 42, 155, 165
HhaI GCGC 4 cut(s) 110, 123, 138, 140
Hin1I GRCGYC 2 cut(s) 108, 147
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 4 cut(s) 108, 121, 136, 138
HinP1I GCGC 4 cut(s) 108, 121, 136, 138
HinfI GANTC 2 cut(s) 18, 201
HpaII CCGG 2 cut(s) 22, 105
HphI GGTGA 1 cut(s) 203
Hpy188I TCNGA 3 cut(s) 17, 41, 206
Hpy188III TCNNGA 1 cut(s) 233
Hpy99I CGWCG 5 cut(s) 58, 104, 149, 181, 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
Hsp92I GRCGYC 2 cut(s) 108, 147
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 4 cut(s) 108, 121, 136, 138
KasI GGCGCC 1 cut(s) 107
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 2 cut(s) 41, 206
LpnPI CCDG 8 cut(s) 35, 79, 106, 118, 165, 173, 184, 218
MalI GATC 2 cut(s) 43, 208
MboI GATC 2 cut(s) 41, 206
MboII GAAGA 1 cut(s) 201
MflI RGATCY 2 cut(s) 41, 206
MluCI AATT 1 cut(s) 194
Mly113I GGCGCC 1 cut(s) 108
MlyI GAGTC 1 cut(s) 12
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 5 cut(s) 56, 73, 97, 106, 126
MreI CGCCGGCG 1 cut(s) 104
MroNI GCCGGC 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 2 cut(s) 22, 105
MspR9I CCNGG 2 cut(s) 23, 94
MvaI CCWGG 1 cut(s) 94
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 146
NaeI GCCGGC 1 cut(s) 106
NarI GGCGCC 1 cut(s) 108
NciI CCSGG 1 cut(s) 23
NdeII GATC 2 cut(s) 41, 206
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 3 cut(s) 43, 109, 225
NmeAIII GCCGAG 1 cut(s) 136
PalAI GGCGCGCC 1 cut(s) 136
PauI GCGCGC 1 cut(s) 136
PcsI WCGNNNNNNNCGW 3 cut(s) 62, 108, 173
PdiI GCCGGC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 1 cut(s) 125
PleI GAGTC 1 cut(s) 12
PluTI GGCGCC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 3 cut(s) 43, 109, 225
PspPI GGNCC 2 cut(s) 96, 223
PsuI RGATCY 2 cut(s) 41, 206
PteI GCGCGC 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 218
SatI GCNGC 1 cut(s) 124
Sau3AI GATC 2 cut(s) 41, 206
Sau96I GGNCC 2 cut(s) 96, 223
SchI GAGTC 1 cut(s) 12
ScrFI CCNGG 2 cut(s) 23, 94
SetI ASST 3 cut(s) 14, 36, 117
SfoI GGCGCC 1 cut(s) 109
SgrAI CRCCGGYG 1 cut(s) 104
SgsI GGCGCGCC 1 cut(s) 136
SinI GGWCC 2 cut(s) 96, 223
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 1 cut(s) 194
SsiI CCGC 3 cut(s) 26, 80, 124
SspDI GGCGCC 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 21, 92
TaqI TCGA 2 cut(s) 117, 240
TaqII GACCGA 1 cut(s) 171
TasI AATT 1 cut(s) 194
TauI GCSGC 1 cut(s) 126
TfiI GAWTC 1 cut(s) 201
TspGWI ACGGA 1 cut(s) 88
VpaK11BI GGWCC 2 cut(s) 96, 223
XapI RAATTY 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.