Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005010

Physical Location & Seq

Genomic Coordinates Forward (+)

35656988 .. 35700286

Gene Structure 43299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG269400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGACCCTACTCTGGATTTCGAGGAAGAGGAAGATGAATATGACAAAGTGGCTTCGGGTGCTAAAGCTGTTGATGATGATCGTTTGTTTATGGACGATGTTACCAACCATGGCTCTTATTTGAACTCTTACAATGTATTGGTTGGTAAGGATTCGCGTGCGAATCACCTGGCTGCCAGGCACAGGCTGAAAGAAGATGATGCTGAAGCTCAGAACCCTAGTTCTACACCAGTGGCTTCTGCTGCACTAGTTAAGCAACAGTTTGCGAAATCACCTGAAGATGGCGGTCAGCCAAAGCCTATACTGATTCAACAAGTGAAGTTGATGAAGGTGGCAACACCAAGGCTTATCGATATAAAGGTTCCTGGAGGGGGAATAGAGCTAGAGGAAGAGTTTGGGAAAATGGGAGAGAGCCAGAAGCAGTTCCAGATGGGAACCATTGAGGCTTTGAGTTTGTCGGTGGTGTCGTCTGTGTCAATTGTCATTTGCAACAAGGCACTTATTAGCACACTTGGTTTTACTTTTGCAATGGAGCTTGCATTGTCTCTGAAGAAACTGACAAATGAAAAGCTACTCCACTTGCACCATATTCAGTTTGGCCAGAATGAAGCTATTCCTGAAAAGTTACAAAGTCAACTCTACGAAAAATATTGTTCCAGAAACAAACGAATAAATCACCTGAAAGAAATTGTAAATAAATGTATTACAAGCGAAGGCCAGTATTGGAAAAATATAGCAATATGCCAATATCAGTTTCTAATTGTGACCAAGGTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TSSC4

Protein Analysis

259

Amino Acids

28.95

Weight (kDa)

5.85

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13310 AT5G13310
fragaria_vesca	FvH4_4g22730
malus_domestica	MD13G1129900.v1.1
prunus_persica	Prupe.1G216200_v2.0.a1
pyrus_communis	pycom13g11300
rosa_chinensis	RchiOBHm_Chr4g0428951
rosa_laevigata	RLG00000007111
rosa_multiflora	Rmu_co8308675.1_g000001 Rmu_sc0008629.1_g000001 Rmu_sc0014815.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370620
rosa_rugosa	Rorug04G0231000
rosa_samantha	Rh1DG096700 Rh3DG066500 Rh4AG287400 Rh4BG293300 Rh4CG309200 Rh4DG290400 Rh5AG269400 Rh5AG408600 Rh6BG138400 Rh6CG104200 Rh6CG135900 Rh6CG212700 Rh6CG397100 Rh6DG095000 Rh6DG122200
rosa_wichuraiana	Rw4G022110 Rw4G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	157
AciI	CCGC	1 cut(s)	285
AcoI	YGGCCR	1 cut(s)	598
AcuI	CTGAAG	3 cut(s)	225, 297, 569
AfiI	CCNNNNNNNGG	4 cut(s)	13, 183, 281, 371
AgsI	TTSAA	2 cut(s)	124, 311
AhlI	ACTAGT	1 cut(s)	247
AjnI	CCWGG	3 cut(s)	168, 176, 364
AjuI	GAANNNNNNNTTGG	2 cut(s)	738, 770
AluBI	AGCT	6 cut(s)	68, 209, 382, 535, 571, 611
AluI	AGCT	6 cut(s)	68, 209, 382, 535, 571, 611
Alw26I	GTCTC	1 cut(s)	549
AoxI	GGCC	2 cut(s)	598, 715
ApeKI	GCWGC	2 cut(s)	173, 242
Asp700I	GAANNNNTTC	2 cut(s)	422, 612
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	158, 264, 668
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	600
BbvI	GCAGC	2 cut(s)	160, 229
BccI	CCATC	2 cut(s)	275, 424
BciT130I	CCWGG	3 cut(s)	170, 178, 366
BcoDI	GTCTC	1 cut(s)	549
BcuI	ACTAGT	1 cut(s)	247
BfaI	CTAG	3 cut(s)	219, 248, 383
BisI	GCNGC	2 cut(s)	174, 243
BlsI	GCNGC	2 cut(s)	175, 244
Bme1390I	CCNGG	3 cut(s)	170, 178, 366
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	6, 363, 436
BmrFI	CCNGG	3 cut(s)	170, 178, 366
BmsI	GCATC	1 cut(s)	190
BpmI	CTGGAG	1 cut(s)	387
Bsa29I	ATCGAT	1 cut(s)	351
BsaBI	GATNNNNATC	1 cut(s)	78
BsaJI	CCNNGG	3 cut(s)	109, 341, 768
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 183, 281, 371
Bse1I	ACTGG	2 cut(s)	230, 718
Bse3DI	GCAATG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	78
BseBI	CCWGG	3 cut(s)	170, 178, 366
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	3 cut(s)	109, 341, 768
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	4 cut(s)	13, 183, 281, 371
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	2 cut(s)	230, 718
BseXI	GCAGC	2 cut(s)	160, 229
BsgI	GTGCAG	1 cut(s)	228
Bsh1236I	CGCG	1 cut(s)	157
BshFI	GGCC	2 cut(s)	600, 717
BshVI	ATCGAT	1 cut(s)	351
BslI	CCNNNNNNNGG	4 cut(s)	13, 183, 281, 371
BsmAI	GTCTC	1 cut(s)	549
BsnI	GGCC	2 cut(s)	600, 717
Bsp143I	GATC	1 cut(s)	79
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	1 cut(s)	285
BspANI	GGCC	2 cut(s)	600, 717
BspCNI	CTCAG	1 cut(s)	223
BspDI	ATCGAT	1 cut(s)	351
BspFNI	CGCG	1 cut(s)	157
BspLI	GGNNCC	3 cut(s)	6, 363, 436
BsrDI	GCAATG	1 cut(s)	534
BsrI	ACTGG	2 cut(s)	230, 718
BssECI	CCNNGG	3 cut(s)	109, 341, 768
BssMI	GATC	1 cut(s)	79
BssT1I	CCWWGG	3 cut(s)	109, 341, 768
Bst2UI	CCWGG	3 cut(s)	170, 178, 366
Bst4CI	ACNGT	1 cut(s)	261
Bst6I	CTCTTC	2 cut(s)	21, 384
BstC8I	GCNNGC	2 cut(s)	159, 537
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	157
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 242
BstNI	CCWGG	3 cut(s)	170, 178, 366
BstSCI	CCNGG	3 cut(s)	168, 176, 364
BstUI	CGCG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	160, 229
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	2 cut(s)	600, 717
BsuTUI	ATCGAT	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	159, 537
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	351
CviAII	CATG	2 cut(s)	110, 777
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	598
Eam1104I	CTCTTC	2 cut(s)	21, 384
EarI	CTCTTC	2 cut(s)	21, 384
Eco130I	CCWWGG	3 cut(s)	109, 341, 768
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	3 cut(s)	225, 297, 569
EcoRII	CCWGG	3 cut(s)	168, 176, 364
EcoT14I	CCWWGG	3 cut(s)	109, 341, 768
ErhI	CCWWGG	3 cut(s)	109, 341, 768
FaeI	CATG	2 cut(s)	113, 780
FaiI	YATR	9 cut(s)	42, 92, 111, 302, 356, 588, 734, 742, 778
FatI	CATG	2 cut(s)	109, 776
Fnu4HI	GCNGC	2 cut(s)	174, 243
Fsp4HI	GCNGC	2 cut(s)	174, 243
FspBI	CTAG	3 cut(s)	219, 248, 383
GluI	GCNGC	2 cut(s)	174, 243
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	2 cut(s)	600, 717
Hin1II	CATG	2 cut(s)	113, 780
HincII	GTYRAC	1 cut(s)	635
HindII	GTYRAC	1 cut(s)	635
HinfI	GANTC	3 cut(s)	152, 163, 307
HphI	GGTGA	3 cut(s)	158, 264, 668
Hpy166II	GTNNAC	1 cut(s)	635
Hpy188I	TCNGA	2 cut(s)	213, 549
Hpy188III	TCNNGA	4 cut(s)	14, 427, 617, 657
Hpy8I	GTNNAC	1 cut(s)	635
HpyAV	CCTTC	2 cut(s)	322, 707
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4V	TGCA	5 cut(s)	245, 489, 527, 539, 583
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 242
HpyF3I	CTNAG	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	113, 780
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	2 cut(s)	160, 229
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	3 cut(s)	219, 248, 383
MaeIII	GTNAC	4 cut(s)	100, 624, 763, 772
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	6 cut(s)	38, 44, 206, 290, 401, 562
MfeI	CAATTG	1 cut(s)	477
MlsI	TGGCCA	1 cut(s)	600
MluCI	AATT	3 cut(s)	477, 687, 759
MluNI	TGGCCA	1 cut(s)	600
MnlI	CCTC	5 cut(s)	16, 22, 362, 379, 436
Mox20I	TGGCCA	1 cut(s)	600
MroXI	GAANNNNTTC	2 cut(s)	422, 612
MscI	TGGCCA	1 cut(s)	600
MseI	TTAA	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	600
MspR9I	CCNGG	3 cut(s)	170, 178, 366
MunI	CAATTG	1 cut(s)	477
MvaI	CCWGG	3 cut(s)	170, 178, 366
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	2 cut(s)	59, 242
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	2 cut(s)	113, 780
NlaIV	GGNNCC	3 cut(s)	6, 363, 436
NmuCI	GTSAC	2 cut(s)	763, 772
PcsI	WCGNNNNNNNCGW	1 cut(s)	464
PdmI	GAANNNNTTC	2 cut(s)	422, 612
PfeI	GAWTC	3 cut(s)	152, 163, 307
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	175, 244
Psp6I	CCWGG	3 cut(s)	168, 176, 364
PspGI	CCWGG	3 cut(s)	168, 176, 364
PspN4I	GGNNCC	3 cut(s)	6, 363, 436
PspPI	GGNCC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	2 cut(s)	174, 243
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	3 cut(s)	170, 178, 366
SfaNI	GCATC	1 cut(s)	190
SinI	GGWCC	1 cut(s)	4
SpeI	ACTAGT	1 cut(s)	247
Sse9I	AATT	3 cut(s)	477, 687, 759
SsiI	CCGC	1 cut(s)	285
SspI	AATATT	1 cut(s)	650
SspMI	CTAG	3 cut(s)	219, 248, 383
StyD4I	CCNGG	3 cut(s)	168, 176, 364
StyI	CCWWGG	3 cut(s)	109, 341, 768
TaaI	ACNGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	21, 351
TasI	AATT	3 cut(s)	477, 687, 759
TfiI	GAWTC	3 cut(s)	152, 163, 307
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	2 cut(s)	763, 772
TseI	GCWGC	2 cut(s)	173, 242
Tsp45I	GTSAC	2 cut(s)	763, 772
TspDTI	ATGAA	4 cut(s)	51, 341, 579, 621
TspRI	CASTG	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XmnI	GAANNNNTTC	2 cut(s)	422, 612
XspI	CTAG	3 cut(s)	219, 248, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.