Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005010

Physical Location & Seq

Genomic Coordinates Forward (+)

18319537 .. 18326566

Gene Structure 7030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG096700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCCCTGTGCGTCGTCGTTTCAGGGTGAATTTGGAATCGGATCTTCCATAGGCATGGACCCTACTCTGGATTTCGAGGAAGAGGAAGATGAATATGACAAAGTGGCTTCGGGTGCTAAAGCTGTTGATGATGATCGTTTGTTTATGGACGATGTTACCAACCATGGCTCTTATTTGAACTCTTACAATGTATTGGTTGGTAAGGATTCGCGTGCGAATCACCTGGCTGCCAGGCACAGGCTGAAAGAAGATGATGCTGAAGCTCAGAACCCTAGTTCTACACCAGTGGCTTCTGCTGCACTAGTTAAGCAACAGTTTGCGAAATCACCTGAAGATGGCGGTCAGCCAAAGCCTATACTGATTCAACAAGTGAAGTTGATGAAGGTGGCAACACCAAGGCTTTACAAAGTTGGAACTTTTCCCCTGCATATTTGCTTGCTCTTAGTAACAAATGTAGGTGGCACTGTGAGATGCTTCAAGGCTTTCCAAAGAGCAAAACATGAGCATGAGGCATTAAAGAGGCAGCTTGAAACTTATTTCCAGGAATCAAGTGAGGAGGAGAGGGAGCATGCTGTGAAATTGATGGAATACCAGGATCCATACAGCATTGATATACGGAAAGGTGCCAATTGGTGGAACACGGATAGGTTTGAACTGTCAAAGCCTATAATCTTCATGACCTATGAAACTCGGCCGACTACTACTCTGCAAGTATACCGTCCTTTCCAGCAAGATTCATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TSSC4

Protein Analysis

247

Amino Acids

28.08

Weight (kDa)

5.43

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13310 AT5G13310
fragaria_vesca	FvH4_4g22730
malus_domestica	MD13G1129900.v1.1
prunus_persica	Prupe.1G216200_v2.0.a1
pyrus_communis	pycom13g11300
rosa_chinensis	RchiOBHm_Chr4g0428951
rosa_laevigata	RLG00000007111
rosa_multiflora	Rmu_co8308675.1_g000001 Rmu_sc0008629.1_g000001 Rmu_sc0014815.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370620
rosa_rugosa	Rorug04G0231000
rosa_samantha	Rh1DG096700 Rh3DG066500 Rh4AG287400 Rh4BG293300 Rh4CG309200 Rh4DG290400 Rh5AG269400 Rh5AG408600 Rh6BG138400 Rh6CG104200 Rh6CG135900 Rh6CG212700 Rh6CG397100 Rh6DG095000 Rh6DG122200
rosa_wichuraiana	Rw4G022110 Rw4G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	623
AccB7I	CCANNNNNTGG	1 cut(s)	633
AccI	GTMKAC	1 cut(s)	714
AccII	CGCG	1 cut(s)	211
AciI	CCGC	1 cut(s)	339
AclWI	GGATC	3 cut(s)	49, 590, 603
AcoI	YGGCCR	1 cut(s)	692
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	2 cut(s)	279, 351
AfiI	CCNNNNNNNGG	4 cut(s)	67, 237, 335, 633
AgsI	TTSAA	5 cut(s)	178, 365, 478, 530, 653
AhlI	ACTAGT	1 cut(s)	301
AjnI	CCWGG	4 cut(s)	222, 230, 540, 591
AluBI	AGCT	3 cut(s)	122, 263, 526
AluI	AGCT	3 cut(s)	122, 263, 526
AlwI	GGATC	3 cut(s)	49, 590, 603
AoxI	GGCC	1 cut(s)	692
ApeKI	GCWGC	3 cut(s)	227, 296, 523
ApoI	RAATTY	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	3 cut(s)	38, 212, 318
AvaII	GGWCC	1 cut(s)	58
BamHI	GGATCC	1 cut(s)	595
BanI	GGYRCC	1 cut(s)	623
BbvI	GCAGC	3 cut(s)	214, 283, 535
BccI	CCATC	2 cut(s)	329, 577
BciT130I	CCWGG	4 cut(s)	224, 232, 542, 593
BcuI	ACTAGT	1 cut(s)	301
BfaI	CTAG	2 cut(s)	273, 302
BisI	GCNGC	3 cut(s)	228, 297, 524
BlsI	GCNGC	3 cut(s)	229, 298, 525
Bme1390I	CCNGG	4 cut(s)	224, 232, 542, 593
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	3 cut(s)	60, 597, 625
BmrFI	CCNGG	4 cut(s)	224, 232, 542, 593
BmsI	GCATC	2 cut(s)	244, 461
BsaBI	GATNNNNATC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	163, 395
Bsc4I	CCNNNNNNNGG	4 cut(s)	67, 237, 335, 633
Bse1I	ACTGG	1 cut(s)	284
Bse8I	GATNNNNATC	1 cut(s)	132
BseBI	CCWGG	4 cut(s)	224, 232, 542, 593
BseDI	CCNNGG	2 cut(s)	163, 395
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	4 cut(s)	67, 237, 335, 633
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	284
BseRI	GAGGAG	2 cut(s)	569, 572
BseX3I	CGGCCG	1 cut(s)	692
BseXI	GCAGC	3 cut(s)	214, 283, 535
BsgI	GTGCAG	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	211
Bsh1285I	CGRYCG	1 cut(s)	695
BshFI	GGCC	1 cut(s)	694
BshNI	GGYRCC	1 cut(s)	623
BsiEI	CGRYCG	1 cut(s)	695
BslI	CCNNNNNNNGG	4 cut(s)	67, 237, 335, 633
BsnI	GGCC	1 cut(s)	694
Bsp143I	GATC	3 cut(s)	41, 133, 595
Bsp19I	CCATGG	1 cut(s)	163
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	694
BspCNI	CTCAG	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	211
BspHI	TCATGA	1 cut(s)	675
BspLI	GGNNCC	3 cut(s)	60, 597, 625
BspPI	GGATC	3 cut(s)	49, 590, 603
BspT107I	GGYRCC	1 cut(s)	623
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	163, 395
BssMI	GATC	3 cut(s)	41, 133, 595
BssNAI	GTATAC	1 cut(s)	715
BssT1I	CCWWGG	2 cut(s)	163, 395
Bst1107I	GTATAC	1 cut(s)	715
Bst2UI	CCWGG	4 cut(s)	224, 232, 542, 593
Bst4CI	ACNGT	4 cut(s)	315, 466, 657, 719
Bst6I	CTCTTC	1 cut(s)	75
BstC8I	GCNNGC	3 cut(s)	213, 437, 570
BstDEI	CTNAG	2 cut(s)	264, 442
BstDSI	CCRYGG	1 cut(s)	163
BstFNI	CGCG	1 cut(s)	211
BstKTI	GATC	3 cut(s)	44, 136, 598
BstMBI	GATC	3 cut(s)	41, 133, 595
BstMCI	CGRYCG	1 cut(s)	695
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 296
BstNI	CCWGG	4 cut(s)	224, 232, 542, 593
BstNSI	RCATGY	1 cut(s)	572
BstSCI	CCNGG	4 cut(s)	222, 230, 540, 591
BstUI	CGCG	1 cut(s)	211
BstV1I	GCAGC	3 cut(s)	214, 283, 535
BstX2I	RGATCY	2 cut(s)	41, 595
BstXI	CCANNNNNNTGG	1 cut(s)	55
BstYI	RGATCY	2 cut(s)	41, 595
BstZ17I	GTATAC	1 cut(s)	715
BstZI	CGGCCG	1 cut(s)	692
BsuRI	GGCC	1 cut(s)	694
BtgI	CCRYGG	1 cut(s)	163
BtsIMutI	CAGTG	2 cut(s)	291, 462
Cac8I	GCNNGC	3 cut(s)	213, 437, 570
CciI	TCATGA	1 cut(s)	675
Cfr13I	GGNCC	1 cut(s)	58
CviAII	CATG	6 cut(s)	55, 164, 500, 506, 569, 676
DdeI	CTNAG	2 cut(s)	264, 442
DpnI	GATC	3 cut(s)	43, 135, 597
DpnII	GATC	3 cut(s)	41, 133, 595
EaeI	YGGCCR	1 cut(s)	692
EagI	CGGCCG	1 cut(s)	692
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
EclXI	CGGCCG	1 cut(s)	692
Eco130I	CCWWGG	2 cut(s)	163, 395
Eco47I	GGWCC	1 cut(s)	58
Eco52I	CGGCCG	1 cut(s)	692
Eco57I	CTGAAG	2 cut(s)	279, 351
EcoRII	CCWGG	4 cut(s)	222, 230, 540, 591
EcoT14I	CCWWGG	2 cut(s)	163, 395
ErhI	CCWWGG	2 cut(s)	163, 395
FaeI	CATG	6 cut(s)	58, 167, 503, 509, 572, 679
FatI	CATG	6 cut(s)	54, 163, 499, 505, 568, 675
FblI	GTMKAC	1 cut(s)	714
Fnu4HI	GCNGC	3 cut(s)	228, 297, 524
Fsp4HI	GCNGC	3 cut(s)	228, 297, 524
FspBI	CTAG	2 cut(s)	273, 302
GluI	GCNGC	3 cut(s)	228, 297, 524
HaeIII	GGCC	1 cut(s)	694
Hin1II	CATG	6 cut(s)	58, 167, 503, 509, 572, 679
HinfI	GANTC	6 cut(s)	36, 206, 217, 361, 545, 734
HphI	GGTGA	3 cut(s)	38, 212, 318
Hpy166II	GTNNAC	1 cut(s)	715
Hpy188I	TCNGA	2 cut(s)	41, 267
Hpy188III	TCNNGA	2 cut(s)	68, 676
Hpy8I	GTNNAC	1 cut(s)	715
Hpy99I	CGWCG	2 cut(s)	16, 19
HpyAV	CCTTC	1 cut(s)	376
HpyCH4III	ACNGT	4 cut(s)	315, 466, 657, 719
HpyCH4V	TGCA	3 cut(s)	299, 427, 709
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 296
HpyF3I	CTNAG	2 cut(s)	264, 442
Hsp92II	CATG	6 cut(s)	58, 167, 503, 509, 572, 679
Kzo9I	GATC	3 cut(s)	41, 133, 595
LmnI	GCTCC	1 cut(s)	565
Lsp1109I	GCAGC	3 cut(s)	214, 283, 535
LweI	GCATC	2 cut(s)	244, 461
MaeI	CTAG	2 cut(s)	273, 302
MaeIII	GTNAC	2 cut(s)	154, 445
MalI	GATC	3 cut(s)	43, 135, 597
MboI	GATC	3 cut(s)	41, 133, 595
MboII	GAAGA	6 cut(s)	36, 92, 98, 260, 344, 664
MfeI	CAATTG	1 cut(s)	628
MflI	RGATCY	2 cut(s)	41, 595
MluCI	AATT	3 cut(s)	29, 578, 628
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	7 cut(s)	70, 76, 502, 513, 547, 550, 555
MseI	TTAA	2 cut(s)	306, 515
MslI	CAYNNNNRTG	2 cut(s)	53, 504
MspR9I	CCNGG	4 cut(s)	224, 232, 542, 593
MunI	CAATTG	1 cut(s)	628
MvaI	CCWGG	4 cut(s)	224, 232, 542, 593
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	2 cut(s)	113, 296
NcoI	CCATGG	1 cut(s)	163
NdeII	GATC	3 cut(s)	41, 133, 595
NlaIII	CATG	6 cut(s)	58, 167, 503, 509, 572, 679
NlaIV	GGNNCC	3 cut(s)	60, 597, 625
NmeAIII	GCCGAG	1 cut(s)	670
NspI	RCATGY	1 cut(s)	572
PaeI	GCATGC	1 cut(s)	572
PagI	TCATGA	1 cut(s)	675
PfeI	GAWTC	6 cut(s)	36, 206, 217, 361, 545, 734
PflMI	CCANNNNNTGG	1 cut(s)	633
PfoI	TCCNGGA	1 cut(s)	540
PkrI	GCNGC	3 cut(s)	229, 298, 525
Psp6I	CCWGG	4 cut(s)	222, 230, 540, 591
PspGI	CCWGG	4 cut(s)	222, 230, 540, 591
PspN4I	GGNNCC	3 cut(s)	60, 597, 625
PspPI	GGNCC	1 cut(s)	58
PsuI	RGATCY	2 cut(s)	41, 595
RseI	CAYNNNNRTG	2 cut(s)	53, 504
SaqAI	TTAA	2 cut(s)	306, 515
SatI	GCNGC	3 cut(s)	228, 297, 524
Sau3AI	GATC	3 cut(s)	41, 133, 595
Sau96I	GGNCC	1 cut(s)	58
ScrFI	CCNGG	4 cut(s)	224, 232, 542, 593
SfaNI	GCATC	2 cut(s)	244, 461
SinI	GGWCC	1 cut(s)	58
SmiMI	CAYNNNNRTG	2 cut(s)	53, 504
SpeI	ACTAGT	1 cut(s)	301
SphI	GCATGC	1 cut(s)	572
Sse9I	AATT	3 cut(s)	29, 578, 628
SsiI	CCGC	1 cut(s)	339
SspMI	CTAG	2 cut(s)	273, 302
StyD4I	CCNGG	4 cut(s)	222, 230, 540, 591
StyI	CCWWGG	2 cut(s)	163, 395
TaaI	ACNGT	4 cut(s)	315, 466, 657, 719
TaqI	TCGA	1 cut(s)	75
TasI	AATT	3 cut(s)	29, 578, 628
TfiI	GAWTC	6 cut(s)	36, 206, 217, 361, 545, 734
Tru1I	TTAA	2 cut(s)	306, 515
Tru9I	TTAA	2 cut(s)	306, 515
TscAI	CASTG	2 cut(s)	291, 469
TseI	GCWGC	3 cut(s)	227, 296, 523
TspDTI	ATGAA	5 cut(s)	105, 395, 664, 699, 726
TspGWI	ACGGA	2 cut(s)	631, 656
TspRI	CASTG	2 cut(s)	291, 469
Van91I	CCANNNNNTGG	1 cut(s)	633
VpaK11BI	GGWCC	1 cut(s)	58
XapI	RAATTY	1 cut(s)	29
XceI	RCATGY	1 cut(s)	572
XmiI	GTMKAC	1 cut(s)	714
XspI	CTAG	2 cut(s)	273, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.