Rh6CG104200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0005010
Physical Location & Seq
Forward (+)
11575828 .. 11577497
1670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG104200.1

Sequence Viewer

Length: 615 bp
ATGGATCCTACTCTGGATTTCGAGGAAGAGGAAGATGAATATGACAAAGTGGCTTCGGGTGCTGAAGCTGTTGATGATGATCGTTTGTTTATGGACGATGTTACCAACCATGGCTCTTATTTGAACTCTTACGATGTATTGGTTGGTAAGGATTCGCGTGCGAATCACCTGGCTTCCAGGCACAGGCTGAAAGAAGATGATGCTGAAGCTCAGAACCCTAGTTCTACACCAGTGGCTTCTGCTGCACTAGTTAAGCAACAGTTTGCGAAATCACCTGAAGATGGCGGTCAGCCAAAGCCTATACTGAAAAGGAAAGACAATTCCTCGGATAGCAAGTCCCGAAAACGTGTTAGGTTTGACCCTGCTTTTGTAGATCAGAGTGACGGTGAAGAATCATCAGGAAAAGTTCAAAACTTGCTTCCGGATATTGGTTCTGGATTAACTGCTTCCCGGGTTTCTTTGAAGAAAAAGACGGCTTCTCAGGTTCCTGATTATTTGGTGAATCCTTCAAAGTATACGTGTTACAGTTTTGATTCAACAAGTGAAGTTGATGAAGGTGGCAACACCAAGGCTTGTATGGACTACATTACTCAAATTACTCAAATTTGCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TSSC4

Protein Analysis

204

Amino Acids

22.41

Weight (kDa)

4.7

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TSSC4 PF15264 156 - 197 9.2e-07 Tumour suppressing sub-chromosomal transferable candidate 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 515
AccII CGCG 1 cut(s) 157
AccIII TCCGGA 1 cut(s) 421
AciI CCGC 1 cut(s) 285
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 603
AcuI CTGAAG 3 cut(s) 84, 225, 297
AfiI CCNNNNNNNGG 3 cut(s) 183, 281, 428
AflIII ACRYGT 2 cut(s) 346, 518
AgsI TTSAA 5 cut(s) 124, 410, 463, 510, 537
AhlI ACTAGT 1 cut(s) 247
AjnI CCWGG 2 cut(s) 168, 176
AluBI AGCT 2 cut(s) 68, 209
AluI AGCT 2 cut(s) 68, 209
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 450
Aor13HI TCCGGA 1 cut(s) 421
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 603
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
AsuC2I CCSGG 2 cut(s) 451, 452
AsuHPI GGTGA 4 cut(s) 158, 264, 398, 511
AvaI CYCGRG 1 cut(s) 450
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 229
BccI CCATC 1 cut(s) 275
BceAI ACGGC 1 cut(s) 489
BciT130I CCWGG 2 cut(s) 170, 178
BcnI CCSGG 2 cut(s) 451, 452
BcuI ACTAGT 1 cut(s) 247
BfaI CTAG 2 cut(s) 219, 248
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 4 cut(s) 170, 178, 451, 452
BmeT110I CYCGRG 1 cut(s) 450
BmiI GGNNCC 2 cut(s) 6, 486
BmrFI CCNGG 4 cut(s) 170, 178, 451, 452
BmsI GCATC 1 cut(s) 190
BpuMI CCSGG 2 cut(s) 451, 452
BsaAI YACGTR 1 cut(s) 519
BsaBI GATNNNNATC 1 cut(s) 78
BsaJI CCNNGG 4 cut(s) 109, 324, 450, 567
BsaWI WCCGGW 1 cut(s) 421
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 281, 428
Bse1I ACTGG 1 cut(s) 230
Bse8I GATNNNNATC 1 cut(s) 78
BseAI TCCGGA 1 cut(s) 421
BseBI CCWGG 2 cut(s) 170, 178
BseDI CCNNGG 4 cut(s) 109, 324, 450, 567
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 3 cut(s) 183, 281, 428
BseMII CTCAG 2 cut(s) 224, 494
BseNI ACTGG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 229
BsgI GTGCAG 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 450
BsiSI CCGG 2 cut(s) 422, 451
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 3 cut(s) 183, 281, 428
BsmFI GGGAC 1 cut(s) 322
BsoBI CYCGRG 1 cut(s) 450
Bsp13I TCCGGA 1 cut(s) 421
Bsp143I GATC 3 cut(s) 4, 79, 373
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 1 cut(s) 285
BspCNI CTCAG 2 cut(s) 223, 493
BspEI TCCGGA 1 cut(s) 421
BspFNI CGCG 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 6, 486
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 4 cut(s) 109, 324, 450, 567
BssMI GATC 3 cut(s) 4, 79, 373
BssNAI GTATAC 1 cut(s) 516
BssT1I CCWWGG 2 cut(s) 109, 567
Bst1107I GTATAC 1 cut(s) 516
Bst2UI CCWGG 2 cut(s) 170, 178
Bst4CI ACNGT 3 cut(s) 261, 386, 527
Bst6I CTCTTC 1 cut(s) 21
BstBAI YACGTR 1 cut(s) 519
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 2 cut(s) 210, 480
BstDSI CCRYGG 1 cut(s) 109
BstFNI CGCG 1 cut(s) 157
BstKTI GATC 3 cut(s) 7, 82, 376
BstMBI GATC 3 cut(s) 4, 79, 373
BstMWI GCNNNNNNNGC 2 cut(s) 59, 242
BstNI CCWGG 2 cut(s) 170, 178
BstSCI CCNGG 4 cut(s) 168, 176, 449, 450
BstUI CGCG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 229
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BstZ17I GTATAC 1 cut(s) 516
BtgI CCRYGG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 1 cut(s) 159
Cfr9I CCCGGG 1 cut(s) 450
CviAII CATG 1 cut(s) 110
DdeI CTNAG 2 cut(s) 210, 480
DpnI GATC 3 cut(s) 6, 81, 375
DpnII GATC 3 cut(s) 4, 79, 373
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco130I CCWWGG 2 cut(s) 109, 567
Eco57I CTGAAG 3 cut(s) 84, 225, 297
Eco88I CYCGRG 1 cut(s) 450
EcoRII CCWGG 2 cut(s) 168, 176
EcoT14I CCWWGG 2 cut(s) 109, 567
ErhI CCWWGG 2 cut(s) 109, 567
FaeI CATG 1 cut(s) 113
FaiI YATR 7 cut(s) 42, 92, 111, 302, 516, 578, 613
FaqI GGGAC 1 cut(s) 322
FatI CATG 1 cut(s) 109
FblI GTMKAC 1 cut(s) 515
Fnu4HI GCNGC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 2 cut(s) 219, 248
GluI GCNGC 1 cut(s) 243
HapII CCGG 2 cut(s) 422, 451
Hin1II CATG 1 cut(s) 113
HinfI GANTC 5 cut(s) 152, 163, 392, 502, 533
HpaII CCGG 2 cut(s) 422, 451
HphI GGTGA 4 cut(s) 158, 264, 398, 511
Hpy166II GTNNAC 1 cut(s) 516
Hpy188I TCNGA 3 cut(s) 213, 328, 378
Hpy188III TCNNGA 6 cut(s) 14, 339, 399, 422, 435, 488
Hpy8I GTNNAC 1 cut(s) 516
HpyAV CCTTC 2 cut(s) 516, 548
HpyCH4III ACNGT 3 cut(s) 261, 386, 527
HpyCH4IV ACGT 2 cut(s) 346, 518
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 242
HpyF3I CTNAG 2 cut(s) 210, 480
HpySE526I ACGT 2 cut(s) 346, 518
Hsp92II CATG 1 cut(s) 113
Kpn2I TCCGGA 1 cut(s) 421
Kzo9I GATC 3 cut(s) 4, 79, 373
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 1 cut(s) 190
MaeI CTAG 2 cut(s) 219, 248
MaeII ACGT 2 cut(s) 346, 518
MaeIII GTNAC 3 cut(s) 100, 380, 521
MalI GATC 3 cut(s) 6, 81, 375
MboI GATC 3 cut(s) 4, 79, 373
MboII GAAGA 6 cut(s) 38, 44, 206, 290, 401, 475
MflI RGATCY 1 cut(s) 4
MluCI AATT 3 cut(s) 319, 594, 603
MnlI CCTC 3 cut(s) 16, 22, 334
MroI TCCGGA 1 cut(s) 421
MseI TTAA 2 cut(s) 252, 440
MspI CCGG 2 cut(s) 422, 451
MspR9I CCNGG 4 cut(s) 170, 178, 451, 452
MvaI CCWGG 2 cut(s) 170, 178
MvnI CGCG 1 cut(s) 157
MwoI GCNNNNNNNGC 2 cut(s) 59, 242
NciI CCSGG 2 cut(s) 451, 452
NcoI CCATGG 1 cut(s) 109
NdeII GATC 3 cut(s) 4, 79, 373
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 2 cut(s) 6, 486
NmuCI GTSAC 1 cut(s) 380
PfeI GAWTC 5 cut(s) 152, 163, 392, 502, 533
PkrI GCNGC 1 cut(s) 244
Ppu21I YACGTR 1 cut(s) 519
Psp6I CCWGG 2 cut(s) 168, 176
PspGI CCWGG 2 cut(s) 168, 176
PspN4I GGNNCC 2 cut(s) 6, 486
PsuI RGATCY 1 cut(s) 4
SaqAI TTAA 2 cut(s) 252, 440
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 3 cut(s) 4, 79, 373
ScrFI CCNGG 4 cut(s) 170, 178, 451, 452
SetI ASST 9 cut(s) 70, 171, 211, 277, 349, 356, 486, 521, 559
SfaNI GCATC 1 cut(s) 190
SmaI CCCGGG 1 cut(s) 452
SpeI ACTAGT 1 cut(s) 247
Sse9I AATT 3 cut(s) 319, 594, 603
SsiI CCGC 1 cut(s) 285
SspMI CTAG 2 cut(s) 219, 248
StyD4I CCNGG 4 cut(s) 168, 176, 449, 450
StyI CCWWGG 2 cut(s) 109, 567
TaaI ACNGT 3 cut(s) 261, 386, 527
TaiI ACGT 2 cut(s) 349, 521
TaqI TCGA 1 cut(s) 21
TasI AATT 3 cut(s) 319, 594, 603
TfiI GAWTC 5 cut(s) 152, 163, 392, 502, 533
Tru1I TTAA 2 cut(s) 252, 440
Tru9I TTAA 2 cut(s) 252, 440
TscAI CASTG 1 cut(s) 237
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 2 cut(s) 51, 567
TspMI CCCGGG 1 cut(s) 450
TspRI CASTG 1 cut(s) 237
XapI RAATTY 1 cut(s) 603
XcmI CCANNNNNNNNNTGG 1 cut(s) 574
XmaI CCCGGG 1 cut(s) 450
XmiI GTMKAC 1 cut(s) 515
XspI CTAG 2 cut(s) 219, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.