Rh5AG408600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0005010
Physical Location & Seq
Reverse (-)
70544252 .. 70572249
27998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG408600.1

Sequence Viewer

Length: 579 bp
ATGATTCATCAAGCAGTTCTTCAATTCAAACTCAAAGAAGCTGGGAGTAGTAGTACTAATACACTCATTCATTTTATCAAGCACATGGTTTATCTAGATGAAATCAAAGAGCAGGCTGGTCCAAAAGTTGGAGGCAAGTTCTTACCCACCATTAATAGTACACTCTTAAACAGATCAGGGTCCCTATGTAAACATTGCAGAAGATGGAATGTATCGATTGGCAATGGCGGTGAAGCGCGGGCTCTACCGGAATTGAGCCATTGGATCTCATTCCTTAATGCGTACAAAGTTGGAACTTTTCCCCTGCATATTTGCTTGCTCTTAGTAACAAATGTAGATGCAAGGCTTTCCAAAGAGCATGAGGCATTAAAGAGGCAGCTTGAAACTTATTTCCAGGTCAAAAATGATAGAGAGCCCAAAACACAAAGAAATTACTGTTTGCTTGAAGAAAGGCGGCCAAATAATGGAACAACTGGAAAGTCCTTTTCCTTTAAGCTGATGAAGAAGCTGCTTTACGCAATTGGACTTCTCACACCTTGTTCTTGTTATGACTTCCTTGCTTCTAACGTAATCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.78

Weight (kDa)

9.51

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 128, 464
AccII CGCG 1 cut(s) 238
AciI CCGC 3 cut(s) 228, 238, 454
AclWI GGATC 1 cut(s) 272
AcoI YGGCCR 1 cut(s) 455
AfaI GTAC 3 cut(s) 55, 160, 284
AfiI CCNNNNNNNGG 2 cut(s) 128, 464
AgsI TTSAA 4 cut(s) 23, 28, 383, 446
AjnI CCWGG 1 cut(s) 393
AluBI AGCT 4 cut(s) 41, 379, 496, 508
AluI AGCT 4 cut(s) 41, 379, 496, 508
AlwI GGATC 1 cut(s) 272
AoxI GGCC 1 cut(s) 455
ApeKI GCWGC 2 cut(s) 376, 508
AseI ATTAAT 1 cut(s) 153
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 2 cut(s) 119, 180
AsuHPI GGTGA 1 cut(s) 242
AvaII GGWCC 2 cut(s) 119, 180
BanII GRGCYC 2 cut(s) 244, 417
BarI GAAGNNNNNNTAC 2 cut(s) 497, 529
BbvI GCAGC 2 cut(s) 388, 495
BccI CCATC 1 cut(s) 198
BciT130I CCWGG 1 cut(s) 395
BfaI CTAG 1 cut(s) 95
BisI GCNGC 3 cut(s) 377, 455, 509
BlsI GCNGC 3 cut(s) 378, 456, 510
BmcAI AGTACT 1 cut(s) 55
Bme1390I CCNGG 1 cut(s) 395
Bme18I GGWCC 2 cut(s) 119, 180
BmgT120I GGNCC 2 cut(s) 119, 180
BmiI GGNNCC 2 cut(s) 181, 182
BmrFI CCNGG 1 cut(s) 395
BmsI GCATC 1 cut(s) 328
Bsa29I ATCGAT 1 cut(s) 215
BsaWI WCCGGW 1 cut(s) 247
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 464
Bse1I ACTGG 1 cut(s) 478
Bse3DI GCAATG 2 cut(s) 193, 229
BseBI CCWGG 1 cut(s) 395
BseCI ATCGAT 1 cut(s) 215
BseLI CCNNNNNNNGG 2 cut(s) 128, 464
BseMI GCAATG 2 cut(s) 193, 229
BseNI ACTGG 1 cut(s) 478
BseXI GCAGC 2 cut(s) 388, 495
BseYI CCCAGC 1 cut(s) 41
Bsh1236I CGCG 1 cut(s) 238
BshFI GGCC 1 cut(s) 457
BshVI ATCGAT 1 cut(s) 215
BsiSI CCGG 1 cut(s) 248
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 2 cut(s) 128, 464
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 1 cut(s) 457
Bsp1286I GDGCHC 2 cut(s) 244, 417
Bsp143I GATC 2 cut(s) 173, 264
BspACI CCGC 3 cut(s) 228, 238, 454
BspANI GGCC 1 cut(s) 457
BspDI ATCGAT 1 cut(s) 215
BspFNI CGCG 1 cut(s) 238
BspLI GGNNCC 2 cut(s) 181, 182
BspPI GGATC 1 cut(s) 272
BsrDI GCAATG 2 cut(s) 193, 229
BsrI ACTGG 1 cut(s) 478
BssMI GATC 2 cut(s) 173, 264
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 1 cut(s) 437
BstC8I GCNNGC 3 cut(s) 114, 240, 317
BstDEI CTNAG 1 cut(s) 322
BstFNI CGCG 1 cut(s) 238
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 2 cut(s) 176, 267
BstMBI GATC 2 cut(s) 173, 264
BstNI CCWGG 1 cut(s) 395
BstSCI CCNGG 1 cut(s) 393
BstUI CGCG 1 cut(s) 238
BstV1I GCAGC 2 cut(s) 388, 495
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
Bsu15I ATCGAT 1 cut(s) 215
BsuRI GGCC 1 cut(s) 457
BsuTUI ATCGAT 1 cut(s) 215
Cac8I GCNNGC 3 cut(s) 114, 240, 317
CfoI GCGC 1 cut(s) 238
Cfr13I GGNCC 2 cut(s) 119, 180
ClaI ATCGAT 1 cut(s) 215
Csp6I GTAC 3 cut(s) 54, 159, 283
CviAII CATG 2 cut(s) 85, 359
CviQI GTAC 3 cut(s) 54, 159, 283
DdeI CTNAG 1 cut(s) 322
DpnI GATC 2 cut(s) 175, 266
DpnII GATC 2 cut(s) 173, 264
EaeI YGGCCR 1 cut(s) 455
Eco24I GRGCYC 2 cut(s) 244, 417
Eco47I GGWCC 2 cut(s) 119, 180
EcoO109I RGGNCCY 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 393
EcoT38I GRGCYC 2 cut(s) 244, 417
FaeI CATG 2 cut(s) 88, 362
FaiI YATR 5 cut(s) 86, 187, 309, 360, 549
FalI AAGNNNNNCTT 1 cut(s) 35
FaqI GGGAC 1 cut(s) 166
FatI CATG 2 cut(s) 84, 358
FauI CCCGC 1 cut(s) 231
Fnu4HI GCNGC 3 cut(s) 377, 455, 509
FriOI GRGCYC 2 cut(s) 244, 417
Fsp4HI GCNGC 3 cut(s) 377, 455, 509
FspBI CTAG 1 cut(s) 95
GlaI GCGC 1 cut(s) 237
GluI GCNGC 3 cut(s) 377, 455, 509
GsaI CCCAGC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 457
HapII CCGG 1 cut(s) 248
HhaI GCGC 1 cut(s) 238
Hin1II CATG 2 cut(s) 88, 362
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 248
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 2 cut(s) 161, 191
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 2 cut(s) 161, 191
HpyCH4III ACNGT 1 cut(s) 437
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 3 cut(s) 198, 307, 341
HpyF3I CTNAG 1 cut(s) 322
HpySE526I ACGT 1 cut(s) 567
Hsp92II CATG 2 cut(s) 88, 362
HspAI GCGC 1 cut(s) 236
KflI GGGWCCC 1 cut(s) 180
Kzo9I GATC 2 cut(s) 173, 264
LpnPI CCDG 9 cut(s) 27, 98, 102, 162, 261, 317, 380, 407, 459
Lsp1109I GCAGC 2 cut(s) 388, 495
LweI GCATC 1 cut(s) 328
MaeI CTAG 1 cut(s) 95
MaeII ACGT 1 cut(s) 567
MaeIII GTNAC 1 cut(s) 325
MalI GATC 2 cut(s) 175, 266
MboI GATC 2 cut(s) 173, 264
MboII GAAGA 4 cut(s) 11, 213, 458, 514
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 1 cut(s) 264
MhlI GDGCHC 2 cut(s) 244, 417
MluCI AATT 5 cut(s) 23, 251, 430, 519, 574
MmeI TCCRAC 2 cut(s) 109, 271
MnlI CCTC 3 cut(s) 125, 355, 366
MseI TTAA 6 cut(s) 153, 167, 276, 368, 492, 577
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 395
MunI CAATTG 1 cut(s) 519
MvaI CCWGG 1 cut(s) 395
MvnI CGCG 1 cut(s) 238
NdeII GATC 2 cut(s) 173, 264
NlaIII CATG 2 cut(s) 88, 362
NlaIV GGNNCC 2 cut(s) 181, 182
PfeI GAWTC 1 cut(s) 4
PflMI CCANNNNNTGG 2 cut(s) 128, 464
PkrI GCNGC 3 cut(s) 378, 456, 510
PpuMI RGGWCCY 1 cut(s) 180
PshBI ATTAAT 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 393
PspFI CCCAGC 1 cut(s) 41
PspGI CCWGG 1 cut(s) 393
PspN4I GGNNCC 2 cut(s) 181, 182
PspPI GGNCC 2 cut(s) 119, 180
PspPPI RGGWCCY 1 cut(s) 180
PsuI RGATCY 1 cut(s) 264
RsaI GTAC 3 cut(s) 55, 160, 284
RsaNI GTAC 3 cut(s) 54, 159, 283
SaqAI TTAA 6 cut(s) 153, 167, 276, 368, 492, 577
SatI GCNGC 3 cut(s) 377, 455, 509
Sau3AI GATC 2 cut(s) 173, 264
Sau96I GGNCC 2 cut(s) 119, 180
ScaI AGTACT 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 395
SduI GDGCHC 2 cut(s) 244, 417
SetI ASST 7 cut(s) 43, 381, 399, 498, 510, 538, 570
SfaNI GCATC 1 cut(s) 328
SinI GGWCC 2 cut(s) 119, 180
Sse9I AATT 5 cut(s) 23, 251, 430, 519, 574
SsiI CCGC 3 cut(s) 228, 238, 454
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 437
TaiI ACGT 1 cut(s) 570
TaqI TCGA 1 cut(s) 215
TasI AATT 5 cut(s) 23, 251, 430, 519, 574
TatI WGTACW 2 cut(s) 53, 158
TauI GCSGC 1 cut(s) 457
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 6 cut(s) 153, 167, 276, 368, 492, 577
Tru9I TTAA 6 cut(s) 153, 167, 276, 368, 492, 577
TseI GCWGC 2 cut(s) 376, 508
TspDTI ATGAA 3 cut(s) 59, 114, 515
Van91I CCANNNNNTGG 2 cut(s) 128, 464
VpaK11BI GGWCC 2 cut(s) 119, 180
VspI ATTAAT 1 cut(s) 153
XbaI TCTAGA 1 cut(s) 94
XspI CTAG 1 cut(s) 95
ZrmI AGTACT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.