Rw4G022110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0005010
Physical Location & Seq
Reverse (-)
47137122 .. 47142602
5481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G022110.1

Sequence Viewer

Length: 753 bp
ATGGAAGAGGAAGATGAATATGATAAAGTGGCTTCGGGTGCTGAAGCTGTTGATGATGATCGTTTGTTTGTGGACGATGTTACCAACCATGGCTCTTATTTGAACTCTTACAATGTATTGGTTGGTAAGGATTCGCGTGCGAATCACCTGGCTGCCAGGCACAGGCTGAAAGAAGATGATGCTGAAGCTCAGAACCCTAGTTCTACACCAGTGGCTTCTGTTGCACTAGTTAAGCAACAGTTTGCGAAATCACCTGAAGATGGCGGTCAGCCAAAGCCTATACTGAAAAGGAAAGACAATTTCTCGGATAGCAAGTCTCGAAAACGTGTTAGGTTTGACCCTGCTTTTGTAGATCAGAGTGACGGTGAAGAATCATTAGGAAAAGTTCAAAACTTGCTTCCTGATATTGGTTCTGGATTAACTGCTTCCCGGGTTTCTTTGAAGAAAAAGACGGCTTCTCAGGTTCCTGATTATTTGGTGAATCCTTCAAATGTGGAGTACAACGTATCCTATGTGTACCATGTCATGTATGCCTACTTCGAAAGGGATAATGAATCAAGTGAGGAGGAGAGGGAGCATGCTGCGAAATTGATGGAATACCAGAATAAGCTTGGTGGAAGGGTGAAATTGAAATCAATACTGATGCCTCTCTCAGAGTTCGATCATGCTGAGAAAGGAGATGCTCTATATGCAATGGAGCTTGCATTGTCTCTGAAGAAACTGACAAATGAAAAGCTACTCCACTTGCACCAT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TSSC4

Protein Analysis

251

Amino Acids

28.2

Weight (kDa)

5.53

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin PF00210 164 - 250 3.4e-06 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 136
AciI CCGC 1 cut(s) 264
AcuI CTGAAG 4 cut(s) 63, 204, 276, 734
AfaI GTAC 2 cut(s) 500, 518
AfiI CCNNNNNNNGG 3 cut(s) 162, 260, 407
AflIII ACRYGT 1 cut(s) 325
AgsI TTSAA 5 cut(s) 103, 389, 442, 489, 631
AhlI ACTAGT 1 cut(s) 226
AjnI CCWGG 2 cut(s) 147, 155
AluBI AGCT 5 cut(s) 47, 188, 610, 700, 736
AluI AGCT 5 cut(s) 47, 188, 610, 700, 736
Alw26I GTCTC 2 cut(s) 321, 714
Ama87I CYCGRG 1 cut(s) 429
ApeKI GCWGC 2 cut(s) 152, 581
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
AsuC2I CCSGG 2 cut(s) 430, 431
AsuHPI GGTGA 5 cut(s) 137, 243, 377, 490, 634
AsuII TTCGAA 1 cut(s) 540
AvaI CYCGRG 1 cut(s) 429
BarI GAAGNNNNNNTAC 2 cut(s) 521, 553
BbvI GCAGC 2 cut(s) 139, 568
BccI CCATC 2 cut(s) 254, 586
BceAI ACGGC 1 cut(s) 468
BciT130I CCWGG 2 cut(s) 149, 157
BciVI GTATCC 1 cut(s) 517
BcnI CCSGG 2 cut(s) 430, 431
BcoDI GTCTC 2 cut(s) 321, 714
BcuI ACTAGT 1 cut(s) 226
BfaI CTAG 2 cut(s) 198, 227
BfuI GTATCC 1 cut(s) 517
BisI GCNGC 2 cut(s) 153, 582
BlsI GCNGC 2 cut(s) 154, 583
Bme1390I CCNGG 4 cut(s) 149, 157, 430, 431
BmeT110I CYCGRG 1 cut(s) 429
BmiI GGNNCC 1 cut(s) 465
BmrFI CCNGG 4 cut(s) 149, 157, 430, 431
BmsI GCATC 3 cut(s) 169, 633, 670
Bpu14I TTCGAA 1 cut(s) 540
BpuMI CCSGG 2 cut(s) 430, 431
BsaBI GATNNNNATC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 88, 429
Bsc4I CCNNNNNNNGG 3 cut(s) 162, 260, 407
Bse1I ACTGG 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 699
Bse8I GATNNNNATC 1 cut(s) 57
BseBI CCWGG 2 cut(s) 149, 157
BseDI CCNNGG 2 cut(s) 88, 429
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 3 cut(s) 162, 260, 407
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 4 cut(s) 203, 473, 660, 666
BseNI ACTGG 1 cut(s) 209
BseRI GAGGAG 2 cut(s) 578, 581
BseXI GCAGC 2 cut(s) 139, 568
Bsh1236I CGCG 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 429
BsiSI CCGG 1 cut(s) 430
BslI CCNNNNNNNGG 3 cut(s) 162, 260, 407
BsmAI GTCTC 2 cut(s) 321, 714
BsoBI CYCGRG 1 cut(s) 429
Bsp119I TTCGAA 1 cut(s) 540
Bsp143I GATC 3 cut(s) 58, 352, 661
Bsp19I CCATGG 1 cut(s) 88
BspACI CCGC 1 cut(s) 264
BspCNI CTCAG 4 cut(s) 202, 472, 661, 665
BspFNI CGCG 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 465
BspT104I TTCGAA 1 cut(s) 540
BsrDI GCAATG 1 cut(s) 699
BsrI ACTGG 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 88, 429
BssMI GATC 3 cut(s) 58, 352, 661
BssT1I CCWWGG 1 cut(s) 88
Bst2UI CCWGG 2 cut(s) 149, 157
Bst4CI ACNGT 2 cut(s) 240, 365
BstBI TTCGAA 1 cut(s) 540
BstC8I GCNNGC 3 cut(s) 138, 579, 702
BstDEI CTNAG 4 cut(s) 189, 459, 652, 669
BstDSI CCRYGG 1 cut(s) 88
BstFNI CGCG 1 cut(s) 136
BstKTI GATC 3 cut(s) 61, 355, 664
BstMAI GTCTC 2 cut(s) 321, 714
BstMBI GATC 3 cut(s) 58, 352, 661
BstMWI GCNNNNNNNGC 3 cut(s) 38, 221, 689
BstNI CCWGG 2 cut(s) 149, 157
BstNSI RCATGY 1 cut(s) 581
BstSCI CCNGG 4 cut(s) 147, 155, 428, 429
BstUI CGCG 1 cut(s) 136
BstV1I GCAGC 2 cut(s) 139, 568
BsuI GTATCC 1 cut(s) 517
BtgI CCRYGG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 3 cut(s) 138, 579, 702
Cfr9I CCCGGG 1 cut(s) 429
Csp6I GTAC 2 cut(s) 499, 517
CviAII CATG 5 cut(s) 89, 521, 526, 578, 665
CviQI GTAC 2 cut(s) 499, 517
DdeI CTNAG 4 cut(s) 189, 459, 652, 669
DpnI GATC 3 cut(s) 60, 354, 663
DpnII GATC 3 cut(s) 58, 352, 661
Eco130I CCWWGG 1 cut(s) 88
Eco57I CTGAAG 4 cut(s) 63, 204, 276, 734
Eco88I CYCGRG 1 cut(s) 429
EcoRII CCWGG 2 cut(s) 147, 155
EcoT14I CCWWGG 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 5 cut(s) 92, 524, 529, 581, 668
FatI CATG 5 cut(s) 88, 520, 525, 577, 664
Fnu4HI GCNGC 2 cut(s) 153, 582
Fsp4HI GCNGC 2 cut(s) 153, 582
FspBI CTAG 2 cut(s) 198, 227
GluI GCNGC 2 cut(s) 153, 582
HapII CCGG 1 cut(s) 430
Hin1II CATG 5 cut(s) 92, 524, 529, 581, 668
HindIII AAGCTT 1 cut(s) 608
HinfI GANTC 5 cut(s) 131, 142, 371, 481, 554
HpaII CCGG 1 cut(s) 430
HphI GGTGA 5 cut(s) 137, 243, 377, 490, 634
Hpy166II GTNNAC 2 cut(s) 73, 517
Hpy188I TCNGA 5 cut(s) 192, 307, 357, 655, 714
Hpy188III TCNNGA 4 cut(s) 318, 401, 414, 467
Hpy8I GTNNAC 2 cut(s) 73, 517
HpyAV CCTTC 2 cut(s) 495, 612
HpyCH4III ACNGT 2 cut(s) 240, 365
HpyCH4IV ACGT 2 cut(s) 325, 504
HpyCH4V TGCA 4 cut(s) 224, 692, 704, 748
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 221, 689
HpyF3I CTNAG 4 cut(s) 189, 459, 652, 669
HpySE526I ACGT 2 cut(s) 325, 504
Hsp92II CATG 5 cut(s) 92, 524, 529, 581, 668
Kzo9I GATC 3 cut(s) 58, 352, 661
LmnI GCTCC 2 cut(s) 574, 697
Lsp1109I GCAGC 2 cut(s) 139, 568
LweI GCATC 3 cut(s) 169, 633, 670
MaeI CTAG 2 cut(s) 198, 227
MaeII ACGT 2 cut(s) 325, 504
MaeIII GTNAC 2 cut(s) 79, 359
MalI GATC 3 cut(s) 60, 354, 663
MboI GATC 3 cut(s) 58, 352, 661
MboII GAAGA 7 cut(s) 17, 23, 185, 269, 380, 454, 727
MluCI AATT 3 cut(s) 298, 587, 626
MnlI CCTC 4 cut(s) 556, 559, 564, 657
MseI TTAA 2 cut(s) 231, 419
MspI CCGG 1 cut(s) 430
MspR9I CCNGG 4 cut(s) 149, 157, 430, 431
MvaI CCWGG 2 cut(s) 149, 157
MvnI CGCG 1 cut(s) 136
MwoI GCNNNNNNNGC 3 cut(s) 38, 221, 689
NciI CCSGG 2 cut(s) 430, 431
NcoI CCATGG 1 cut(s) 88
NdeII GATC 3 cut(s) 58, 352, 661
NlaIII CATG 5 cut(s) 92, 524, 529, 581, 668
NlaIV GGNNCC 1 cut(s) 465
NmuCI GTSAC 1 cut(s) 359
NspI RCATGY 1 cut(s) 581
NspV TTCGAA 1 cut(s) 540
PaeI GCATGC 1 cut(s) 581
PfeI GAWTC 5 cut(s) 131, 142, 371, 481, 554
PkrI GCNGC 2 cut(s) 154, 583
Psp6I CCWGG 2 cut(s) 147, 155
PspGI CCWGG 2 cut(s) 147, 155
PspN4I GGNNCC 1 cut(s) 465
RsaI GTAC 2 cut(s) 500, 518
RsaNI GTAC 2 cut(s) 499, 517
SaqAI TTAA 2 cut(s) 231, 419
SatI GCNGC 2 cut(s) 153, 582
Sau3AI GATC 3 cut(s) 58, 352, 661
ScrFI CCNGG 4 cut(s) 149, 157, 430, 431
SfaNI GCATC 3 cut(s) 169, 633, 670
SfuI TTCGAA 1 cut(s) 540
SmaI CCCGGG 1 cut(s) 431
SpeI ACTAGT 1 cut(s) 226
SphI GCATGC 1 cut(s) 581
Sse9I AATT 3 cut(s) 298, 587, 626
SsiI CCGC 1 cut(s) 264
SspMI CTAG 2 cut(s) 198, 227
StyD4I CCNGG 4 cut(s) 147, 155, 428, 429
StyI CCWWGG 1 cut(s) 88
TaaI ACNGT 2 cut(s) 240, 365
TaiI ACGT 2 cut(s) 328, 507
TaqI TCGA 3 cut(s) 319, 540, 660
TasI AATT 3 cut(s) 298, 587, 626
TatI WGTACW 1 cut(s) 498
TfiI GAWTC 5 cut(s) 131, 142, 371, 481, 554
Tru1I TTAA 2 cut(s) 231, 419
Tru9I TTAA 2 cut(s) 231, 419
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 2 cut(s) 152, 581
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 3 cut(s) 30, 567, 744
TspMI CCCGGG 1 cut(s) 429
TspRI CASTG 1 cut(s) 216
XceI RCATGY 1 cut(s) 581
XcmI CCANNNNNNNNNTGG 1 cut(s) 608
XmaI CCCGGG 1 cut(s) 429
XspI CTAG 2 cut(s) 198, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.