Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005010

Physical Location & Seq

Genomic Coordinates Forward (+)

58405271 .. 58407035

Gene Structure 1765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG397100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGACCCTACTCTGGATTTCGAGGAAGAGGAAGATGAATATGACAAAGTGGCTTCGGGTGCTAAAGCTGTTGATGATGATCGTTTGTTTATGGACGATGTTACCAACCATGGCTCTTATTTGAATTCTTACAATGTATTGGTTGGTAAGGATTCGCGTGCGAATCACCTGGCTGCCAGGCACAGGCTGAAAGAAGATGATGCTGAAGCTCAGAACCCTAGTTCTACACCAGTGGCTTCTGCTGCACTAGTTAAGCAACAGTTTGCGAAATCACCTGAAGATGGCGGTCAGCCAAAGCCTATACTGATTCAACAAGTGAAGTTGATGAAGGTGGCAACACCAAGGCTTATCGATATAAAGGTTCCTGGAGGGGGAATAGAGCTAGAGGAAGAGTTTGGGAAAATGGGAGAGAGCCAGAAGCAGTTCCAGATGGGAACCATTGAGGCTTTGAGTTTGTCGGTGGTGTCGTCTGTGTCAATTGTCATTTGCAACAAGGCACTTATTAGCACACTTGGTTTTACTTTTGATGCTTCAAGGCTTTCCAAAGAGCAAAACATGAGCATGAGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TSSC4

Protein Analysis

190

Amino Acids

20.83

Weight (kDa)

4.95

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13310 AT5G13310
fragaria_vesca	FvH4_4g22730
malus_domestica	MD13G1129900.v1.1
prunus_persica	Prupe.1G216200_v2.0.a1
pyrus_communis	pycom13g11300
rosa_chinensis	RchiOBHm_Chr4g0428951
rosa_laevigata	RLG00000007111
rosa_multiflora	Rmu_co8308675.1_g000001 Rmu_sc0008629.1_g000001 Rmu_sc0014815.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370620
rosa_rugosa	Rorug04G0231000
rosa_samantha	Rh1DG096700 Rh3DG066500 Rh4AG287400 Rh4BG293300 Rh4CG309200 Rh4DG290400 Rh5AG269400 Rh5AG408600 Rh6BG138400 Rh6CG104200 Rh6CG135900 Rh6CG212700 Rh6CG397100 Rh6DG095000 Rh6DG122200
rosa_wichuraiana	Rw4G022110 Rw4G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	157
AciI	CCGC	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	124
AcuI	CTGAAG	2 cut(s)	225, 297
AfiI	CCNNNNNNNGG	4 cut(s)	13, 183, 281, 371
AgsI	TTSAA	3 cut(s)	124, 311, 534
AhlI	ACTAGT	1 cut(s)	247
AjnI	CCWGG	3 cut(s)	168, 176, 364
AluBI	AGCT	3 cut(s)	68, 209, 382
AluI	AGCT	3 cut(s)	68, 209, 382
ApeKI	GCWGC	2 cut(s)	173, 242
ApoI	RAATTY	1 cut(s)	124
Asp700I	GAANNNNTTC	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	158, 264
AvaII	GGWCC	1 cut(s)	4
BbvI	GCAGC	2 cut(s)	160, 229
BccI	CCATC	2 cut(s)	275, 424
BciT130I	CCWGG	3 cut(s)	170, 178, 366
BcuI	ACTAGT	1 cut(s)	247
BfaI	CTAG	3 cut(s)	219, 248, 383
BisI	GCNGC	2 cut(s)	174, 243
BlsI	GCNGC	2 cut(s)	175, 244
Bme1390I	CCNGG	3 cut(s)	170, 178, 366
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	6, 363, 436
BmrFI	CCNGG	3 cut(s)	170, 178, 366
BmsI	GCATC	2 cut(s)	190, 517
BpmI	CTGGAG	1 cut(s)	387
Bsa29I	ATCGAT	1 cut(s)	351
BsaBI	GATNNNNATC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	109, 341
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 183, 281, 371
Bse1I	ACTGG	1 cut(s)	230
Bse8I	GATNNNNATC	1 cut(s)	78
BseBI	CCWGG	3 cut(s)	170, 178, 366
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	2 cut(s)	109, 341
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	4 cut(s)	13, 183, 281, 371
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	160, 229
BsgI	GTGCAG	1 cut(s)	228
Bsh1236I	CGCG	1 cut(s)	157
BshVI	ATCGAT	1 cut(s)	351
BslI	CCNNNNNNNGG	4 cut(s)	13, 183, 281, 371
Bsp143I	GATC	1 cut(s)	79
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	223
BspDI	ATCGAT	1 cut(s)	351
BspFNI	CGCG	1 cut(s)	157
BspLI	GGNNCC	3 cut(s)	6, 363, 436
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	2 cut(s)	109, 341
BssMI	GATC	1 cut(s)	79
BssT1I	CCWWGG	2 cut(s)	109, 341
Bst2UI	CCWGG	3 cut(s)	170, 178, 366
Bst4CI	ACNGT	1 cut(s)	261
Bst6I	CTCTTC	2 cut(s)	21, 384
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	157
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 242
BstNI	CCWGG	3 cut(s)	170, 178, 366
BstSCI	CCNGG	3 cut(s)	168, 176, 364
BstUI	CGCG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	160, 229
Bsu15I	ATCGAT	1 cut(s)	351
BsuTUI	ATCGAT	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	351
CviAII	CATG	3 cut(s)	110, 556, 562
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eam1104I	CTCTTC	2 cut(s)	21, 384
EarI	CTCTTC	2 cut(s)	21, 384
Eco130I	CCWWGG	2 cut(s)	109, 341
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	2 cut(s)	225, 297
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	3 cut(s)	168, 176, 364
EcoT14I	CCWWGG	2 cut(s)	109, 341
ErhI	CCWWGG	2 cut(s)	109, 341
FaeI	CATG	3 cut(s)	113, 559, 565
FaiI	YATR	7 cut(s)	42, 92, 111, 302, 356, 557, 563
FatI	CATG	3 cut(s)	109, 555, 561
Fnu4HI	GCNGC	2 cut(s)	174, 243
Fsp4HI	GCNGC	2 cut(s)	174, 243
FspBI	CTAG	3 cut(s)	219, 248, 383
GluI	GCNGC	2 cut(s)	174, 243
GsuI	CTGGAG	1 cut(s)	387
Hin1II	CATG	3 cut(s)	113, 559, 565
HinfI	GANTC	3 cut(s)	152, 163, 307
HphI	GGTGA	2 cut(s)	158, 264
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	2 cut(s)	14, 427
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4V	TGCA	2 cut(s)	245, 489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 242
HpyF3I	CTNAG	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	113, 559, 565
Kzo9I	GATC	1 cut(s)	79
Lsp1109I	GCAGC	2 cut(s)	160, 229
LweI	GCATC	2 cut(s)	190, 517
MaeI	CTAG	3 cut(s)	219, 248, 383
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	5 cut(s)	38, 44, 206, 290, 401
MfeI	CAATTG	1 cut(s)	477
MluCI	AATT	2 cut(s)	124, 477
MnlI	CCTC	6 cut(s)	16, 22, 362, 379, 436, 558
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	2 cut(s)	252, 571
MslI	CAYNNNNRTG	1 cut(s)	560
MspR9I	CCNGG	3 cut(s)	170, 178, 366
MunI	CAATTG	1 cut(s)	477
MvaI	CCWGG	3 cut(s)	170, 178, 366
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	2 cut(s)	59, 242
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	3 cut(s)	113, 559, 565
NlaIV	GGNNCC	3 cut(s)	6, 363, 436
PcsI	WCGNNNNNNNCGW	1 cut(s)	464
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	3 cut(s)	152, 163, 307
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	175, 244
Psp6I	CCWGG	3 cut(s)	168, 176, 364
PspGI	CCWGG	3 cut(s)	168, 176, 364
PspN4I	GGNNCC	3 cut(s)	6, 363, 436
PspPI	GGNCC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	560
SaqAI	TTAA	2 cut(s)	252, 571
SatI	GCNGC	2 cut(s)	174, 243
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	3 cut(s)	170, 178, 366
SetI	ASST	7 cut(s)	70, 171, 211, 277, 333, 363, 384
SfaNI	GCATC	2 cut(s)	190, 517
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	560
SpeI	ACTAGT	1 cut(s)	247
Sse9I	AATT	2 cut(s)	124, 477
SsiI	CCGC	1 cut(s)	285
SspMI	CTAG	3 cut(s)	219, 248, 383
StyD4I	CCNGG	3 cut(s)	168, 176, 364
StyI	CCWWGG	2 cut(s)	109, 341
TaaI	ACNGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	21, 351
TasI	AATT	2 cut(s)	124, 477
TfiI	GAWTC	3 cut(s)	152, 163, 307
Tru1I	TTAA	2 cut(s)	252, 571
Tru9I	TTAA	2 cut(s)	252, 571
TscAI	CASTG	1 cut(s)	237
TseI	GCWGC	2 cut(s)	173, 242
TspDTI	ATGAA	2 cut(s)	51, 341
TspRI	CASTG	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	3 cut(s)	219, 248, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.