Rw4G024920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0005010
Physical Location & Seq
Reverse (-)
50855036 .. 50856678
1643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G024920.1

Sequence Viewer

Length: 906 bp
ATGGACCCTACTCTGGATTTCGAGGAAGAGGAAGATGAATATGACAAAGTGGCTTCGGGTGCTGATGCTGTTGATGATGATCGTTTGTTTATGGACGATGTTACCAACCATGGCTCTTATTTGAACTCTTACAATGTATTGGTTGGTAAGGATTCGCGTGCGAATCACCTGGCTGCCAGGCACAGGCTGAAAGAAGATGATGCTGAAGCTCAGCACCCTAGTTCTACACCAGTGGCTTCTGCTGCACTAGTTAAGCAACAGTTTGCGAAATCACCTGAAGATGGCGGTCAGCCAAAGCCTATACTGAAAAGGAAAGACAATTCCTCCGATAGCAAGTCCCGAAAACGTGTTAGGTTTGACCCTGCTTTTGTAGATCAGAGTGATGGTGAAGAATCATCAGGAAAAGTTCAAAACTTGGTTCCGGATATTGGTTCTGGATTAACTGCTTCCCGGGTTTCTTTGAAGAAAAAGACGGCTTCTCAGGTTCCTGATTATTTGGTGAATCCTTCAAAGTATACGTGTTACAGTTTTGATTCAACAAGTGAAGTTGATGAAGGTGGCAACACCAAGGCTTGTATGGACTACATTACTCAGGTTGAAAGCTCAGGGTCAGAGATGGAGATGGAGGATGCTTCACCTCAACTTCCCGAGTCTGTGACTTTTGTTCCAAAGAGAAAGACTGTCGATGGTAGCACAAGAACAAAGCAGGACGAGGAAGATGATGATAAGCAGTCCTTAAATATAAAAGGCGTCGCTGTTGGCATTGCAGCTATGGAAGAAAATGAAATCAGTGCGGCAGAGGAGGAAGACAAGTCAGAGCAAAATGCAGCCGTTTTAAGTGATTGTTTATCAAAAAGTGGTCGGAAGTTTCGAACCAAACCAATGTCAGATGATGAGTCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TSSC4

Protein Analysis

301

Amino Acids

32.94

Weight (kDa)

4.57

Isoelectric Point (pI)

53.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TSSC4 PF15264 156 - 210 4.5e-07 Tumour suppressing sub-chromosomal transferable candidate 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 515
AccII CGCG 1 cut(s) 157
AccIII TCCGGA 1 cut(s) 421
AciI CCGC 2 cut(s) 285, 794
AcuI CTGAAG 2 cut(s) 225, 297
AcyI GRCGYC 1 cut(s) 750
AfiI CCNNNNNNNGG 4 cut(s) 13, 183, 281, 428
AflIII ACRYGT 2 cut(s) 346, 518
AgsI TTSAA 6 cut(s) 124, 410, 463, 510, 537, 599
AhlI ACTAGT 1 cut(s) 247
AjnI CCWGG 2 cut(s) 168, 176
AluBI AGCT 3 cut(s) 209, 603, 770
AluI AGCT 3 cut(s) 209, 603, 770
Ama87I CYCGRG 2 cut(s) 450, 647
Aor13HI TCCGGA 1 cut(s) 421
ApeKI GCWGC 4 cut(s) 173, 242, 767, 827
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 2 cut(s) 451, 452
AsuHPI GGTGA 5 cut(s) 158, 264, 398, 511, 627
AsuII TTCGAA 1 cut(s) 871
AvaI CYCGRG 2 cut(s) 450, 647
AvaII GGWCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 813
BbvI GCAGC 4 cut(s) 160, 229, 779, 839
BccI CCATC 5 cut(s) 275, 377, 610, 616, 680
BceAI ACGGC 2 cut(s) 489, 815
BciT130I CCWGG 2 cut(s) 170, 178
BcnI CCSGG 2 cut(s) 451, 452
BcuI ACTAGT 1 cut(s) 247
BfaI CTAG 2 cut(s) 219, 248
BisI GCNGC 5 cut(s) 174, 243, 768, 795, 828
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 5 cut(s) 175, 244, 769, 796, 829
Bme1390I CCNGG 4 cut(s) 170, 178, 451, 452
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 2 cut(s) 450, 647
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 6, 420, 486
BmrFI CCNGG 4 cut(s) 170, 178, 451, 452
BmsI GCATC 3 cut(s) 55, 190, 619
BpiI GAAGAC 1 cut(s) 813
Bpu10I CCTNAGC 1 cut(s) 604
Bpu1102I GCTNAGC 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 871
BpuMI CCSGG 2 cut(s) 451, 452
BsaAI YACGTR 1 cut(s) 519
BsaBI GATNNNNATC 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 750
BsaJI CCNNGG 3 cut(s) 109, 450, 567
BsaWI WCCGGW 1 cut(s) 421
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 183, 281, 428
Bse1I ACTGG 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 762
Bse8I GATNNNNATC 1 cut(s) 78
BseAI TCCGGA 1 cut(s) 421
BseBI CCWGG 2 cut(s) 170, 178
BseDI CCNNGG 3 cut(s) 109, 450, 567
BseGI GGATG 1 cut(s) 634
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 4 cut(s) 13, 183, 281, 428
BseMI GCAATG 1 cut(s) 762
BseMII CTCAG 4 cut(s) 224, 494, 605, 618
BseNI ACTGG 1 cut(s) 230
BseRI GAGGAG 1 cut(s) 815
BseXI GCAGC 4 cut(s) 160, 229, 779, 839
BsgI GTGCAG 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 157
BsiHKCI CYCGRG 2 cut(s) 450, 647
BsiSI CCGG 2 cut(s) 422, 451
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 4 cut(s) 13, 183, 281, 428
BsmFI GGGAC 1 cut(s) 322
BsoBI CYCGRG 2 cut(s) 450, 647
Bsp119I TTCGAA 1 cut(s) 871
Bsp13I TCCGGA 1 cut(s) 421
Bsp143I GATC 2 cut(s) 79, 373
Bsp1720I GCTNAGC 1 cut(s) 210
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 2 cut(s) 285, 794
BspCNI CTCAG 4 cut(s) 223, 493, 604, 617
BspEI TCCGGA 1 cut(s) 421
BspFNI CGCG 1 cut(s) 157
BspLI GGNNCC 3 cut(s) 6, 420, 486
BspT104I TTCGAA 1 cut(s) 871
BsrDI GCAATG 1 cut(s) 762
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 3 cut(s) 109, 450, 567
BssMI GATC 2 cut(s) 79, 373
BssNAI GTATAC 1 cut(s) 516
BssNI GRCGYC 1 cut(s) 750
BssT1I CCWWGG 2 cut(s) 109, 567
Bst1107I GTATAC 1 cut(s) 516
Bst2UI CCWGG 2 cut(s) 170, 178
Bst4CI ACNGT 3 cut(s) 261, 527, 682
Bst6I CTCTTC 1 cut(s) 21
BstACI GRCGYC 1 cut(s) 750
BstBAI YACGTR 1 cut(s) 519
BstBI TTCGAA 1 cut(s) 871
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 4 cut(s) 210, 480, 591, 604
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 634
BstFNI CGCG 1 cut(s) 157
BstKTI GATC 2 cut(s) 82, 376
BstMBI GATC 2 cut(s) 79, 373
BstMWI GCNNNNNNNGC 2 cut(s) 59, 242
BstNI CCWGG 2 cut(s) 170, 178
BstSCI CCNGG 4 cut(s) 168, 176, 449, 450
BstUI CGCG 1 cut(s) 157
BstV1I GCAGC 4 cut(s) 160, 229, 779, 839
BstV2I GAAGAC 1 cut(s) 813
BstZ17I GTATAC 1 cut(s) 516
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 634
BtsIMutI CAGTG 2 cut(s) 237, 796
Cac8I GCNNGC 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 4
Cfr9I CCCGGG 1 cut(s) 450
CseI GACGC 1 cut(s) 739
CviAII CATG 1 cut(s) 110
DdeI CTNAG 4 cut(s) 210, 480, 591, 604
DpnI GATC 2 cut(s) 81, 375
DpnII GATC 2 cut(s) 79, 373
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco130I CCWWGG 2 cut(s) 109, 567
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 2 cut(s) 225, 297
Eco88I CYCGRG 2 cut(s) 450, 647
EcoRII CCWGG 2 cut(s) 168, 176
EcoT14I CCWWGG 2 cut(s) 109, 567
ErhI CCWWGG 2 cut(s) 109, 567
FaeI CATG 1 cut(s) 113
FaiI YATR 8 cut(s) 42, 92, 111, 302, 516, 578, 743, 773
FalI AAGNNNNNCTT 2 cut(s) 719, 751
FaqI GGGAC 1 cut(s) 322
FatI CATG 1 cut(s) 109
FblI GTMKAC 1 cut(s) 515
Fnu4HI GCNGC 5 cut(s) 174, 243, 768, 795, 828
FokI GGATG 1 cut(s) 641
Fsp4HI GCNGC 5 cut(s) 174, 243, 768, 795, 828
FspBI CTAG 2 cut(s) 219, 248
GluI GCNGC 5 cut(s) 174, 243, 768, 795, 828
HapII CCGG 2 cut(s) 422, 451
HgaI GACGC 1 cut(s) 739
Hin1I GRCGYC 1 cut(s) 750
Hin1II CATG 1 cut(s) 113
HinfI GANTC 7 cut(s) 152, 163, 392, 502, 533, 650, 896
HpaII CCGG 2 cut(s) 422, 451
HphI GGTGA 5 cut(s) 158, 264, 398, 511, 627
Hpy166II GTNNAC 1 cut(s) 516
Hpy188I TCNGA 7 cut(s) 328, 378, 613, 817, 864, 889, 901
Hpy188III TCNNGA 7 cut(s) 14, 339, 399, 422, 435, 488, 647
Hpy8I GTNNAC 1 cut(s) 516
Hpy99I CGWCG 1 cut(s) 755
HpyAV CCTTC 2 cut(s) 516, 548
HpyCH4III ACNGT 3 cut(s) 261, 527, 682
HpyCH4IV ACGT 2 cut(s) 346, 518
HpyCH4V TGCA 3 cut(s) 245, 767, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 242
HpyF3I CTNAG 4 cut(s) 210, 480, 591, 604
HpySE526I ACGT 2 cut(s) 346, 518
Hsp92I GRCGYC 1 cut(s) 750
Hsp92II CATG 1 cut(s) 113
Kpn2I TCCGGA 1 cut(s) 421
Kzo9I GATC 2 cut(s) 79, 373
Lsp1109I GCAGC 4 cut(s) 160, 229, 779, 839
LweI GCATC 3 cut(s) 55, 190, 619
MaeI CTAG 2 cut(s) 219, 248
MaeII ACGT 2 cut(s) 346, 518
MaeIII GTNAC 3 cut(s) 100, 521, 655
MalI GATC 2 cut(s) 81, 375
MboI GATC 2 cut(s) 79, 373
MboII GAAGA 9 cut(s) 38, 44, 206, 290, 401, 475, 728, 788, 818
MluCI AATT 1 cut(s) 319
MlyI GAGTC 2 cut(s) 659, 905
MmeI TCCRAC 1 cut(s) 842
MnlI CCTC 8 cut(s) 16, 22, 334, 619, 648, 706, 793, 796
MroI TCCGGA 1 cut(s) 421
MseI TTAA 5 cut(s) 252, 440, 737, 836, 904
MspI CCGG 2 cut(s) 422, 451
MspR9I CCNGG 4 cut(s) 170, 178, 451, 452
MvaI CCWGG 2 cut(s) 170, 178
MvnI CGCG 1 cut(s) 157
MwoI GCNNNNNNNGC 2 cut(s) 59, 242
NciI CCSGG 2 cut(s) 451, 452
NcoI CCATGG 1 cut(s) 109
NdeII GATC 2 cut(s) 79, 373
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 3 cut(s) 6, 420, 486
NmuCI GTSAC 1 cut(s) 655
NspV TTCGAA 1 cut(s) 871
PcsI WCGNNNNNNNCGW 1 cut(s) 868
PfeI GAWTC 5 cut(s) 152, 163, 392, 502, 533
PkrI GCNGC 5 cut(s) 175, 244, 769, 796, 829
PleI GAGTC 2 cut(s) 658, 904
PpsI GAGTC 2 cut(s) 658, 904
Ppu21I YACGTR 1 cut(s) 519
Psp6I CCWGG 2 cut(s) 168, 176
PspGI CCWGG 2 cut(s) 168, 176
PspN4I GGNNCC 3 cut(s) 6, 420, 486
PspPI GGNCC 1 cut(s) 4
SaqAI TTAA 5 cut(s) 252, 440, 737, 836, 904
SatI GCNGC 5 cut(s) 174, 243, 768, 795, 828
Sau3AI GATC 2 cut(s) 79, 373
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 2 cut(s) 659, 905
ScrFI CCNGG 4 cut(s) 170, 178, 451, 452
SfaNI GCATC 3 cut(s) 55, 190, 619
SfuI TTCGAA 1 cut(s) 871
SinI GGWCC 1 cut(s) 4
SmaI CCCGGG 1 cut(s) 452
SpeI ACTAGT 1 cut(s) 247
Sse9I AATT 1 cut(s) 319
SsiI CCGC 2 cut(s) 285, 794
SspMI CTAG 2 cut(s) 219, 248
StyD4I CCNGG 4 cut(s) 168, 176, 449, 450
StyI CCWWGG 2 cut(s) 109, 567
TaaI ACNGT 3 cut(s) 261, 527, 682
TaiI ACGT 2 cut(s) 349, 521
TaqI TCGA 3 cut(s) 21, 684, 871
TasI AATT 1 cut(s) 319
TauI GCSGC 1 cut(s) 797
TfiI GAWTC 5 cut(s) 152, 163, 392, 502, 533
Tru1I TTAA 5 cut(s) 252, 440, 737, 836, 904
Tru9I TTAA 5 cut(s) 252, 440, 737, 836, 904
TscAI CASTG 2 cut(s) 237, 796
TseFI GTSAC 1 cut(s) 655
TseI GCWGC 4 cut(s) 173, 242, 767, 827
Tsp45I GTSAC 1 cut(s) 655
TspDTI ATGAA 3 cut(s) 51, 567, 798
TspMI CCCGGG 1 cut(s) 450
TspRI CASTG 2 cut(s) 237, 796
VpaK11BI GGWCC 1 cut(s) 4
XcmI CCANNNNNNNNNTGG 1 cut(s) 574
XmaI CCCGGG 1 cut(s) 450
XmiI GTMKAC 1 cut(s) 515
XspI CTAG 2 cut(s) 219, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.