AT5G15090

Mitochondrial outer membrane protein porin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003226
Physical Location & Seq
Reverse (-)
4888964 .. 4891603
2640 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G15090.2

Sequence Viewer

Length: 825 bp
ATGGTTAAAGGTCCAGGACTCTACACTGAAATCGGCAAAAAGGCCAGAGATCTTCTGTACAGGGATTACCAAGGAGACCAGAAATTCAGTGTCACCACTTACTCTTCAACTGGTGTTGCGATCACTACAACGGGAACAAACAAAGGAAGCTTGTTTTTGGGTGATGTTGCTACCCAAGTGAAGAACAACAACTTCACTGCTGATGTCAAAGTTTCCACTGATTCTTCTCTTTTGACCACTCTTACCTTTGATGAGCCTGCCCCTGGACTGAAAGTTATTGTTCAGGCTAAGTTGCCCGATCACAAATCTGGAAAGGCTGAGGTTCAGTATTTCCATGACTATGCTGGTATCTCTACCAGCGTTGGATTCACAGCTACCCCGATTGTCAACTTCTCCGGTGTGGTTGGAACCAATGGTTTGTCTCTTGGTACTGATGTGGCCTATAACACCGAATCTGGCAACTTCAAACATTTCAATGCTGGTTTCAACTTCACCAAGGATGATTTGACTGCTTCCCTCATTCTGAATGACAAAGGTGAGAAATTGAATGCATCCTACTACCAGATTGTGAGCCCGTCGACTGTGGTTGGAGCTGAGATTAGCCACAACTTCACGACCAAAGAGAACGCCATCACTGTCGGAACTCAACACGCGCTTGACCCATTGACCACAGTGAAGGCAAGAGTGAACAATGCTGGTGTGGCTAACGCTCTGATCCAACATGAGTGGCGTCCAAAGTCGTTCTTCACCGTTTCTGGAGAGGTTGATTCTAAGGCGATCGATAAGAGTGCCAAGGTTGGGATTGCTCTCGCTCTCAAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005773 GO:0005774 GO:0005886 GO:0006091 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008308 GO:0008509 GO:0009060 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010029 GO:0010033 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0015980 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031966 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032592 GO:0034220 GO:0042170 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045333 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051704 GO:0051707 GO:0055085 GO:0055114 GO:0065007 GO:0070013 GO:0071944 GO:0098542 GO:0098573 GO:0098588 GO:0098656 GO:0098805 GO:1900140 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166
Pfam Domains
Protein Families
Porin_3

Protein Analysis

274

Amino Acids

29.21

Weight (kDa)

7.84

Isoelectric Point (pI)

6.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Porin_3 PF01459 4 - 267 8.9e-85 Eukaryotic porin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 578
AccII CGCG 1 cut(s) 653
AclWI GGATC 1 cut(s) 709
AcsI RAATTY 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 730
AfaI GTAC 2 cut(s) 59, 430
AfiI CCNNNNNNNGG 2 cut(s) 263, 798
AgsI TTSAA 5 cut(s) 108, 466, 475, 487, 547
AjnI CCWGG 2 cut(s) 13, 262
AluBI AGCT 3 cut(s) 150, 374, 593
AluI AGCT 3 cut(s) 150, 374, 593
Alw26I GTCTC 2 cut(s) 69, 426
AlwI GGATC 1 cut(s) 709
AoxI GGCC 2 cut(s) 42, 438
ApoI RAATTY 1 cut(s) 83
AspLEI GCGC 1 cut(s) 655
AspS9I GGNCC 1 cut(s) 11
AsuHPI GGTGA 5 cut(s) 85, 173, 484, 548, 739
AvaII GGWCC 1 cut(s) 11
BaeI ACNNNNGTAYC 2 cut(s) 420, 453
BanII GRGCYC 1 cut(s) 575
BbvCI CCTCAGC 1 cut(s) 318
BccI CCATC 1 cut(s) 638
BcgI CGANNNNNNTGC 2 cut(s) 770, 804
BciT130I CCWGG 2 cut(s) 15, 264
BcoDI GTCTC 2 cut(s) 69, 426
BglII AGATCT 1 cut(s) 49
Bme1390I CCNGG 2 cut(s) 15, 264
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 409
BmrFI CCNGG 2 cut(s) 15, 264
BmsI GCATC 1 cut(s) 560
BpmI CTGGAG 1 cut(s) 777
Bpu10I CCTNAGC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 800
Bsa29I ATCGAT 1 cut(s) 780
BsaHI GRCGYC 1 cut(s) 730
BsaI GGTCTC 1 cut(s) 69
BsaJI CCNNGG 4 cut(s) 70, 262, 495, 792
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 798
Bse1I ACTGG 1 cut(s) 115
BseBI CCWGG 2 cut(s) 15, 264
BseCI ATCGAT 1 cut(s) 780
BseDI CCNNGG 4 cut(s) 70, 262, 495, 792
BseGI GGATG 2 cut(s) 505, 551
BseLI CCNNNNNNNGG 2 cut(s) 263, 798
BseMII CTCAG 2 cut(s) 309, 585
BseNI ACTGG 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 653
Bsh1285I CGRYCG 1 cut(s) 780
BshFI GGCC 2 cut(s) 44, 440
BshVI ATCGAT 1 cut(s) 780
BsiEI CGRYCG 1 cut(s) 780
BsiSI CCGG 1 cut(s) 396
BslI CCNNNNNNNGG 2 cut(s) 263, 798
BsmAI GTCTC 2 cut(s) 69, 426
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 2 cut(s) 44, 440
Bso31I GGTCTC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 575
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 5 cut(s) 49, 120, 298, 714, 777
BspANI GGCC 2 cut(s) 44, 440
BspCNI CTCAG 2 cut(s) 310, 586
BspDI ATCGAT 1 cut(s) 780
BspFNI CGCG 1 cut(s) 653
BspLI GGNNCC 1 cut(s) 409
BspPI GGATC 1 cut(s) 709
BspTNI GGTCTC 1 cut(s) 69
BsrGI TGTACA 1 cut(s) 57
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 4 cut(s) 70, 262, 495, 792
BssMI GATC 5 cut(s) 49, 120, 298, 714, 777
BssNI GRCGYC 1 cut(s) 730
BssT1I CCWWGG 3 cut(s) 70, 495, 792
Bst2UI CCWGG 2 cut(s) 15, 264
Bst4CI ACNGT 4 cut(s) 583, 637, 673, 751
Bst6I CTCTTC 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 730
BstAUI TGTACA 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 4 cut(s) 288, 318, 594, 771
BstF5I GGATG 2 cut(s) 505, 551
BstFNI CGCG 1 cut(s) 653
BstHHI GCGC 1 cut(s) 655
BstKTI GATC 5 cut(s) 52, 123, 301, 717, 780
BstMAI GTCTC 2 cut(s) 69, 426
BstMBI GATC 5 cut(s) 49, 120, 298, 714, 777
BstMCI CGRYCG 1 cut(s) 780
BstMWI GCNNNNNNNGC 1 cut(s) 701
BstNI CCWGG 2 cut(s) 15, 264
BstSCI CCNGG 2 cut(s) 13, 262
BstUI CGCG 1 cut(s) 653
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
Bsu15I ATCGAT 1 cut(s) 780
BsuRI GGCC 2 cut(s) 44, 440
BsuTUI ATCGAT 1 cut(s) 780
BtsCI GGATG 2 cut(s) 505, 551
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 6 cut(s) 24, 94, 195, 216, 633, 678
Cac8I GCNNGC 1 cut(s) 258
CfoI GCGC 1 cut(s) 655
Cfr13I GGNCC 1 cut(s) 11
ClaI ATCGAT 1 cut(s) 780
CseI GACGC 1 cut(s) 719
Csp6I GTAC 2 cut(s) 58, 429
CspCI CAANNNNNGTGG 2 cut(s) 707, 742
CviAII CATG 2 cut(s) 335, 722
CviQI GTAC 2 cut(s) 58, 429
DdeI CTNAG 4 cut(s) 288, 318, 594, 771
DpnI GATC 5 cut(s) 51, 122, 300, 716, 779
DpnII GATC 5 cut(s) 49, 120, 298, 714, 777
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
Eco130I CCWWGG 3 cut(s) 70, 495, 792
Eco24I GRGCYC 1 cut(s) 575
Eco31I GGTCTC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 13, 262
EcoT14I CCWWGG 3 cut(s) 70, 495, 792
EcoT22I ATGCAT 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 575
ErhI CCWWGG 3 cut(s) 70, 495, 792
FaeI CATG 2 cut(s) 338, 725
FaiI YATR 4 cut(s) 336, 342, 444, 723
FalI AAGNNNNNCTT 2 cut(s) 728, 760
FatI CATG 2 cut(s) 334, 721
FblI GTMKAC 1 cut(s) 578
FokI GGATG 2 cut(s) 512, 538
FriOI GRGCYC 1 cut(s) 575
GlaI GCGC 1 cut(s) 654
GsuI CTGGAG 1 cut(s) 777
HaeIII GGCC 2 cut(s) 44, 440
HapII CCGG 1 cut(s) 396
HgaI GACGC 1 cut(s) 719
HhaI GCGC 1 cut(s) 655
Hin1I GRCGYC 1 cut(s) 730
Hin1II CATG 2 cut(s) 338, 725
Hin6I GCGC 1 cut(s) 653
HinP1I GCGC 1 cut(s) 653
HincII GTYRAC 2 cut(s) 388, 579
HindII GTYRAC 2 cut(s) 388, 579
HindIII AAGCTT 1 cut(s) 148
HinfI GANTC 5 cut(s) 18, 221, 366, 452, 767
HpaII CCGG 1 cut(s) 396
HphI GGTGA 5 cut(s) 85, 173, 484, 548, 739
Hpy166II GTNNAC 3 cut(s) 388, 579, 688
Hpy188I TCNGA 3 cut(s) 525, 641, 714
Hpy188III TCNNGA 3 cut(s) 309, 613, 756
Hpy8I GTNNAC 3 cut(s) 388, 579, 688
Hpy99I CGWCG 1 cut(s) 580
HpyAV CCTTC 1 cut(s) 670
HpyCH4III ACNGT 4 cut(s) 583, 637, 673, 751
HpyCH4V TGCA 1 cut(s) 551
HpyF10VI GCNNNNNNNGC 1 cut(s) 701
HpyF3I CTNAG 4 cut(s) 288, 318, 594, 771
Hsp92I GRCGYC 1 cut(s) 730
Hsp92II CATG 2 cut(s) 338, 725
HspAI GCGC 1 cut(s) 653
Kzo9I GATC 5 cut(s) 49, 120, 298, 714, 777
LmnI GCTCC 1 cut(s) 590
LweI GCATC 1 cut(s) 560
MaeIII GTNAC 1 cut(s) 91
MalI GATC 5 cut(s) 51, 122, 300, 716, 779
MboI GATC 5 cut(s) 49, 120, 298, 714, 777
MboII GAAGA 5 cut(s) 44, 96, 193, 216, 736
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 575
MluCI AATT 2 cut(s) 83, 542
MlyI GAGTC 1 cut(s) 12
MmeI TCCRAC 5 cut(s) 343, 385, 568, 619, 742
MnlI CCTC 3 cut(s) 313, 527, 754
Mph1103I ATGCAT 1 cut(s) 553
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 2 cut(s) 339, 474
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 2 cut(s) 15, 264
Mva1269I GAATGC 1 cut(s) 553
MvaI CCWGG 2 cut(s) 15, 264
MvnI CGCG 1 cut(s) 653
MwoI GCNNNNNNNGC 1 cut(s) 701
NdeII GATC 5 cut(s) 49, 120, 298, 714, 777
NlaIII CATG 2 cut(s) 338, 725
NlaIV GGNNCC 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 91
NsiI ATGCAT 1 cut(s) 553
PctI GAATGC 1 cut(s) 553
PfeI GAWTC 4 cut(s) 221, 366, 452, 767
PfoI TCCNGGA 1 cut(s) 13
Ple19I CGATCG 1 cut(s) 780
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 2 cut(s) 13, 262
PspGI CCWGG 2 cut(s) 13, 262
PspN4I GGNNCC 1 cut(s) 409
PspPI GGNCC 1 cut(s) 11
PsuI RGATCY 1 cut(s) 49
PvuI CGATCG 1 cut(s) 780
RsaI GTAC 2 cut(s) 59, 430
RsaNI GTAC 2 cut(s) 58, 429
RseI CAYNNNNRTG 2 cut(s) 339, 474
SalI GTCGAC 1 cut(s) 577
SaqAI TTAA 1 cut(s) 6
Sau3AI GATC 5 cut(s) 49, 120, 298, 714, 777
Sau96I GGNCC 1 cut(s) 11
SchI GAGTC 1 cut(s) 12
ScrFI CCNGG 2 cut(s) 15, 264
SduI GDGCHC 1 cut(s) 575
SetI ASST 9 cut(s) 13, 152, 248, 324, 376, 538, 595, 765, 798
SfaNI GCATC 1 cut(s) 560
SinI GGWCC 1 cut(s) 11
SmiMI CAYNNNNRTG 2 cut(s) 339, 474
SmlI CTYRAG 1 cut(s) 815
SmoI CTYRAG 1 cut(s) 815
Sse9I AATT 2 cut(s) 83, 542
StyD4I CCNGG 2 cut(s) 13, 262
StyI CCWWGG 3 cut(s) 70, 495, 792
TaaI ACNGT 4 cut(s) 583, 637, 673, 751
TaqI TCGA 2 cut(s) 578, 780
TasI AATT 2 cut(s) 83, 542
TatI WGTACW 1 cut(s) 57
TfiI GAWTC 4 cut(s) 221, 366, 452, 767
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 6 cut(s) 31, 94, 202, 223, 640, 678
TseFI GTSAC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 91
TspRI CASTG 6 cut(s) 31, 94, 202, 223, 640, 678
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 1 cut(s) 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 578
Zsp2I ATGCAT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.