Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003226

Physical Location & Seq

Genomic Coordinates Reverse (-)

68554093 .. 68555941

Gene Structure 1849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG378600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTGAAGGGTCCGGGTCTCTACTCAGATATCGGCAAGAAAGCCAGAGATCTTCTTTACAGGGATTACCAGACCGACCACAAGTTCACCGTCACCACTTACACTTCTACCGGAGTTGCAATCACTTCGAGTGGAATTAAGAAAGGTGATCTTCTTTTGGGGGATGTGAGCACTCAGCTGAAGAACAAGAACATCACAACTGATGTTAAAGTTGATACCAATTCGAATCTTCTCACAACCATTACTATTGACGAACCCGCACCTGGTCTCAAGGCAATCTTTAGCTTCATTGTACCTGATCAAAAATCTGGAAAGGTGGAACTTCAATACCAGCATGAGTATGCTGGAATAAGTACTAGCCTTGGATTGACTGCCAACCCTGTTATTAACTTTTCTGGTGTTGTTGGGAACACTGCTCTCTCTCTTGGAACAGATGTTTCCTTTGACACTGCCTCTGGGAACTTGACCAAACTCAATGCTGGGTTGAATTTCATCCATACTGACCTCATTGCCTCCCTGCTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009526 GO:0009527 GO:0009536 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0034220 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098656 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

175

Amino Acids

18.63

Weight (kDa)

6.26

Isoelectric Point (pI)

7.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	4 - 174	1.1e-50	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01280 AT5G15090 AT5G15090
fragaria_vesca	FvH4_4g16150 FvH4_4g31911 FvH4_6g49250
malus_domestica	MD09G1047200.v1.1 MD13G1078700.v1.1 MD16G1078300.v1.1 MD17G1047400.v1.1
prunus_persica	Prupe.1G268200_v2.0.a1 Prupe.3G271800_v2.0.a1
pyrus_communis	pycom111g03800 pycom13g06830 pycom16g06780 pycom17g04220
rosa_chinensis	RchiOBHm_Chr2g0169111 RchiOBHm_Chr4g0440571
rosa_laevigata	RLG00000006167 RLG00000021835
rosa_multiflora	Rmu_sc0011312.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082430 Rroxscaffold_5G00381400
rosa_rugosa	Rorug02G0537000 Rorug04G0326700
rosa_samantha	Rh2AG608900 Rh2BG621800 Rh2CG590500 Rh2DG632400 Rh4AG378500 Rh4AG378600 Rh4BG391200 Rh4CG405900 Rh4DG385100
rosa_wichuraiana	Rw2G050490 Rw4G032410 Rw4G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	487
AcuI	CTGAAG	1 cut(s)	200
AfaI	GTAC	2 cut(s)	294, 355
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	326, 487
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	2 cut(s)	178, 285
AluI	AGCT	2 cut(s)	178, 285
Alw21I	GWGCWC	1 cut(s)	173
Alw26I	GTCTC	2 cut(s)	23, 272
ApoI	RAATTY	1 cut(s)	487
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	15
AsuHPI	GGTGA	4 cut(s)	16, 79, 85, 158
AsuII	TTCGAA	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	173
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BciT130I	CCWGG	1 cut(s)	264
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	15
BcoDI	GTCTC	2 cut(s)	23, 272
BfaI	CTAG	1 cut(s)	357
BglII	AGATCT	1 cut(s)	49
BmcAI	AGTACT	1 cut(s)	355
Bme1390I	CCNGG	2 cut(s)	15, 264
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	2 cut(s)	15, 264
Bpu14I	TTCGAA	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	15
BsaI	GGTCTC	2 cut(s)	23, 272
BsaJI	CCNNGG	1 cut(s)	361
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	2 cut(s)	169, 492
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	2 cut(s)	39, 188
BseYI	CCCAGC	1 cut(s)	479
BsiHKAI	GWGCWC	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	14, 111
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	2 cut(s)	23, 272
Bso31I	GGTCTC	2 cut(s)	23, 272
Bsp119I	TTCGAA	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	3 cut(s)	49, 148, 298
BspACI	CCGC	1 cut(s)	258
BspCNI	CTCAG	2 cut(s)	38, 187
BspLI	GGNNCC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	224
BspTNI	GGTCTC	2 cut(s)	23, 272
BsrDI	GCAATG	1 cut(s)	507
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	3 cut(s)	49, 148, 298
BssT1I	CCWWGG	1 cut(s)	361
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	91
BstBI	TTCGAA	1 cut(s)	224
BstDEI	CTNAG	2 cut(s)	25, 174
BstF5I	GGATG	2 cut(s)	169, 492
BstKTI	GATC	3 cut(s)	52, 151, 301
BstMAI	GTCTC	2 cut(s)	23, 272
BstMBI	GATC	3 cut(s)	49, 148, 298
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	2 cut(s)	13, 262
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	169, 492
BtsI	GCAGTG	2 cut(s)	411, 447
BtsIMutI	CAGTG	2 cut(s)	411, 447
Cfr13I	GGNCC	1 cut(s)	11
CsiI	ACCWGGT	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	293, 354
CviAII	CATG	1 cut(s)	335
CviJI	RGCY	4 cut(s)	44, 178, 285, 360
CviKI_1	RGCY	4 cut(s)	44, 178, 285, 360
CviQI	GTAC	2 cut(s)	293, 354
DdeI	CTNAG	2 cut(s)	25, 174
DpnI	GATC	3 cut(s)	51, 150, 300
DpnII	GATC	3 cut(s)	49, 148, 298
Eco130I	CCWWGG	1 cut(s)	361
Eco31I	GGTCTC	2 cut(s)	23, 272
Eco32I	GATATC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	262
EcoRV	GATATC	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	1 cut(s)	338
FaiI	YATR	3 cut(s)	336, 342, 498
FalI	AAGNNNNNCTT	4 cut(s)	135, 167, 263, 295
FatI	CATG	1 cut(s)	334
FauI	CCCGC	1 cut(s)	265
FbaI	TGATCA	1 cut(s)	298
FokI	GGATG	2 cut(s)	176, 479
FspBI	CTAG	1 cut(s)	357
GsaI	CCCAGC	1 cut(s)	483
HapII	CCGG	2 cut(s)	14, 111
Hin1II	CATG	1 cut(s)	338
HinfI	GANTC	1 cut(s)	226
HpaII	CCGG	2 cut(s)	14, 111
HphI	GGTGA	4 cut(s)	16, 79, 85, 158
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	1 cut(s)	309
Hpy8I	GTNNAC	1 cut(s)	87
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4V	TGCA	1 cut(s)	119
HpyF3I	CTNAG	2 cut(s)	25, 174
Hsp92II	CATG	1 cut(s)	338
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	49, 148, 298
MabI	ACCWGGT	1 cut(s)	262
MaeI	CTAG	1 cut(s)	357
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	3 cut(s)	51, 150, 300
MboI	GATC	3 cut(s)	49, 148, 298
MboII	GAAGA	4 cut(s)	44, 143, 193, 221
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	3 cut(s)	135, 220, 487
MnlI	CCTC	3 cut(s)	463, 515, 523
MseI	TTAA	3 cut(s)	138, 207, 387
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	178
MspI	CCGG	2 cut(s)	14, 111
MspR9I	CCNGG	2 cut(s)	15, 264
MvaI	CCWGG	1 cut(s)	264
NciI	CCSGG	1 cut(s)	15
NdeII	GATC	3 cut(s)	49, 148, 298
NlaIII	CATG	1 cut(s)	338
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	91
NspV	TTCGAA	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	2 cut(s)	294, 355
RsaNI	GTAC	2 cut(s)	293, 354
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	3 cut(s)	138, 207, 387
Sau3AI	GATC	3 cut(s)	49, 148, 298
Sau96I	GGNCC	1 cut(s)	11
ScaI	AGTACT	1 cut(s)	355
ScrFI	CCNGG	2 cut(s)	15, 264
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	7 cut(s)	148, 180, 265, 287, 298, 318, 507
SexAI	ACCWGGT	1 cut(s)	262
SfuI	TTCGAA	1 cut(s)	224
SinI	GGWCC	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	3 cut(s)	135, 220, 487
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	2 cut(s)	13, 262
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	91
TaqI	TCGA	2 cut(s)	128, 224
TaqII	GACCGA	1 cut(s)	89
TasI	AATT	3 cut(s)	135, 220, 487
TatI	WGTACW	1 cut(s)	353
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	3 cut(s)	138, 207, 387
Tru9I	TTAA	3 cut(s)	138, 207, 387
TscAI	CASTG	2 cut(s)	418, 454
TseFI	GTSAC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	2 cut(s)	277, 481
TspRI	CASTG	2 cut(s)	418, 454
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	1 cut(s)	487
XspI	CTAG	1 cut(s)	357
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.