Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003226

Physical Location & Seq

Genomic Coordinates Forward (+)

27556444 .. 27559845

Gene Structure 3402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G268200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGTGAAGGGCCCCGGTCTCTACTTGGATATCGGCAAGAAAGCCAGAGATCTTCTCTACAAGGATTACCAAAGCGACCACAAGTTCACCGTTACCACTTACACTTCTACTGGAGTTGCAATCAGTTCAACTGGAATTAGGAAGGGTGACCTCTATCTGGGAGATGTGAGCACTCAGCTGAAGAACAAGAACATCACAACTGATGTAAAAGTTGACACCGACTCTAATCTTCGTACAACCATTACCATTGATGAGCCTGCACCTGGTCTAAAGGCAATCTTTAGCTTTATTGTACCTGACCAGAGATCTGGCAAGGTGGAGCTCCAATATCAGCATGAGTATGCTGGAATAAGTACTGGCATTGGGTTGACTGCCAATCCGATTGTTAACTTTTCTGGTGTTGTTGGGAACAATCTTCTCTCTCTTGGAACAGATCTTTCCTTTGATACAGCCTCTGGAAACTTCACAAAATGGAATGCAGGGTTGAATTTCACCCATACTGATCTCATTGCTTCCCTTATACTGAATGATAAAGCCGACACTGTTACTGCCTCCTACTACCACACTGTAAGTCCACTCACCAACACTGCTGTTGGTGCGGAGCTCTCCCATAGCTTTTCAAGCAATGAAAACAGTCTCACAATTGGAACTCAGCATGCACTTGACCCCCTAACCACAGTGAAGGGTCGTGTGAATAACTATGGCAGGGCAAGTGCTCTCATCCAGCATGAGTGGCGTCCCAAATCTTTCTTCACCATCTCAGGAGAGGTTGATACCCGGGCAATTGAAAAGAGTGCAAAGATCGGTTTGGCCTTGGCACTCAAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009526 GO:0009527 GO:0009536 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0034220 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098656 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

277

Amino Acids

29.78

Weight (kDa)

7.06

Isoelectric Point (pI)

11.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01280 AT5G15090 AT5G15090
fragaria_vesca	FvH4_4g16150 FvH4_4g31911 FvH4_6g49250
malus_domestica	MD09G1047200.v1.1 MD13G1078700.v1.1 MD16G1078300.v1.1 MD17G1047400.v1.1
prunus_persica	Prupe.1G268200_v2.0.a1 Prupe.3G271800_v2.0.a1
pyrus_communis	pycom111g03800 pycom13g06830 pycom16g06780 pycom17g04220
rosa_chinensis	RchiOBHm_Chr2g0169111 RchiOBHm_Chr4g0440571
rosa_laevigata	RLG00000006167 RLG00000021835
rosa_multiflora	Rmu_sc0011312.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082430 Rroxscaffold_5G00381400
rosa_rugosa	Rorug02G0537000 Rorug04G0326700
rosa_samantha	Rh2AG608900 Rh2BG621800 Rh2CG590500 Rh2DG632400 Rh4AG378500 Rh4AG378600 Rh4BG391200 Rh4CG405900 Rh4DG385100
rosa_wichuraiana	Rw2G050490 Rw4G032410 Rw4G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	599
AcsI	RAATTY	1 cut(s)	487
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	736
AfaI	GTAC	3 cut(s)	235, 294, 355
AfiI	CCNNNNNNNGG	2 cut(s)	157, 263
AgsI	TTSAA	4 cut(s)	129, 487, 621, 788
AjnI	CCWGG	1 cut(s)	262
AjuI	GAANNNNNNNTTGG	2 cut(s)	734, 766
AluBI	AGCT	5 cut(s)	178, 285, 322, 604, 615
AluI	AGCT	5 cut(s)	178, 285, 322, 604, 615
Alw21I	GWGCWC	4 cut(s)	173, 324, 606, 718
Alw26I	GTCTC	2 cut(s)	23, 641
AlwNI	CAGNNNCTG	1 cut(s)	455
Ama87I	CYCGRG	1 cut(s)	777
AoxI	GGCC	2 cut(s)	10, 810
ApaI	GGGCCC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	487
AspS9I	GGNCC	2 cut(s)	10, 11
AsuC2I	CCSGG	3 cut(s)	15, 778, 779
AsuHPI	GGTGA	6 cut(s)	16, 79, 158, 484, 571, 745
AvaI	CYCGRG	1 cut(s)	777
BaeGI	GKGCMC	1 cut(s)	14
BanII	GRGCYC	3 cut(s)	14, 324, 606
Bbv12I	GWGCWC	4 cut(s)	173, 324, 606, 718
BccI	CCATC	1 cut(s)	764
BciT130I	CCWGG	1 cut(s)	264
BcnI	CCSGG	3 cut(s)	15, 778, 779
BcoDI	GTCTC	2 cut(s)	23, 641
BglII	AGATCT	3 cut(s)	49, 305, 433
BmcAI	AGTACT	1 cut(s)	355
Bme1390I	CCNGG	4 cut(s)	15, 264, 778, 779
BmeT110I	CYCGRG	1 cut(s)	777
BmgT120I	GGNCC	2 cut(s)	10, 11
BmiI	GGNNCC	2 cut(s)	12, 13
BmrFI	CCNGG	4 cut(s)	15, 264, 778, 779
BplI	GAGNNNNNCTC	2 cut(s)	39, 71
BpmI	CTGGAG	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	806
BpuMI	CCSGG	3 cut(s)	15, 778, 779
BsaHI	GRCGYC	1 cut(s)	736
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	13, 777, 813
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 263
Bse1I	ACTGG	3 cut(s)	115, 136, 361
Bse3DI	GCAATG	2 cut(s)	507, 631
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	3 cut(s)	13, 777, 813
BseGI	GGATG	1 cut(s)	720
BseLI	CCNNNNNNNGG	2 cut(s)	157, 263
BseMI	GCAATG	2 cut(s)	507, 631
BseMII	CTCAG	3 cut(s)	188, 665, 774
BseNI	ACTGG	3 cut(s)	115, 136, 361
BseSI	GKGCMC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	243
BshFI	GGCC	2 cut(s)	12, 812
BsiHKAI	GWGCWC	4 cut(s)	173, 324, 606, 718
BsiHKCI	CYCGRG	1 cut(s)	777
BsiSI	CCGG	2 cut(s)	15, 778
BslFI	GGGAC	1 cut(s)	723
BslI	CCNNNNNNNGG	2 cut(s)	157, 263
BsmAI	GTCTC	2 cut(s)	23, 641
BsmFI	GGGAC	1 cut(s)	723
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	2 cut(s)	12, 812
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	777
Bsp120I	GGGCCC	1 cut(s)	10
Bsp1286I	GDGCHC	5 cut(s)	14, 173, 324, 606, 718
Bsp143I	GATC	5 cut(s)	49, 305, 433, 502, 801
BspACI	CCGC	1 cut(s)	599
BspANI	GGCC	2 cut(s)	12, 812
BspCNI	CTCAG	3 cut(s)	187, 664, 773
BspLI	GGNNCC	2 cut(s)	12, 13
BspTNI	GGTCTC	1 cut(s)	23
BsrDI	GCAATG	2 cut(s)	507, 631
BsrI	ACTGG	3 cut(s)	115, 136, 361
BssECI	CCNNGG	3 cut(s)	13, 777, 813
BssMI	GATC	5 cut(s)	49, 305, 433, 502, 801
BssNI	GRCGYC	1 cut(s)	736
BssT1I	CCWWGG	1 cut(s)	813
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	5 cut(s)	91, 544, 568, 635, 679
BstACI	GRCGYC	1 cut(s)	736
BstC8I	GCNNGC	2 cut(s)	258, 657
BstDEI	CTNAG	3 cut(s)	174, 651, 760
BstEII	GGTNACC	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	720
BstKTI	GATC	5 cut(s)	52, 308, 436, 505, 804
BstMAI	GTCTC	2 cut(s)	23, 641
BstMBI	GATC	5 cut(s)	49, 305, 433, 502, 801
BstMWI	GCNNNNNNNGC	3 cut(s)	596, 621, 733
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	659
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	4 cut(s)	13, 262, 776, 777
BstSLI	GKGCMC	1 cut(s)	14
BstX2I	RGATCY	3 cut(s)	49, 305, 433
BstXI	CCANNNNNNTGG	1 cut(s)	308
BstYI	RGATCY	3 cut(s)	49, 305, 433
BsuRI	GGCC	2 cut(s)	12, 812
BtsCI	GGATG	1 cut(s)	720
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	4 cut(s)	540, 564, 585, 684
Cac8I	GCNNGC	2 cut(s)	258, 657
CaiI	CAGNNNCTG	1 cut(s)	455
Cfr13I	GGNCC	2 cut(s)	10, 11
Cfr9I	CCCGGG	1 cut(s)	777
CseI	GACGC	1 cut(s)	725
CsiI	ACCWGGT	1 cut(s)	262
Csp6I	GTAC	3 cut(s)	234, 293, 354
CviAII	CATG	3 cut(s)	335, 656, 728
CviQI	GTAC	3 cut(s)	234, 293, 354
DdeI	CTNAG	3 cut(s)	174, 651, 760
DpnI	GATC	5 cut(s)	51, 307, 435, 504, 803
DpnII	GATC	5 cut(s)	49, 305, 433, 502, 801
Ecl136II	GAGCTC	2 cut(s)	322, 604
Eco130I	CCWWGG	1 cut(s)	813
Eco24I	GRGCYC	3 cut(s)	14, 324, 606
Eco31I	GGTCTC	1 cut(s)	23
Eco32I	GATATC	1 cut(s)	31
Eco53kI	GAGCTC	2 cut(s)	322, 604
Eco57I	CTGAAG	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	777
Eco91I	GGTNACC	1 cut(s)	146
EcoICRI	GAGCTC	2 cut(s)	322, 604
EcoO109I	RGGNCCY	2 cut(s)	10, 11
EcoO65I	GGTNACC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	262
EcoRV	GATATC	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	813
EcoT38I	GRGCYC	3 cut(s)	14, 324, 606
ErhI	CCWWGG	1 cut(s)	813
FaeI	CATG	3 cut(s)	338, 659, 731
FaiI	YATR	9 cut(s)	336, 342, 498, 521, 612, 657, 702, 729, 829
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	1 cut(s)	723
FatI	CATG	3 cut(s)	334, 655, 727
FokI	GGATG	1 cut(s)	707
FriOI	GRGCYC	3 cut(s)	14, 324, 606
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	12, 812
HapII	CCGG	2 cut(s)	15, 778
HgaI	GACGC	1 cut(s)	725
Hin1I	GRCGYC	1 cut(s)	736
Hin1II	CATG	3 cut(s)	338, 659, 731
HincII	GTYRAC	3 cut(s)	214, 369, 388
HindII	GTYRAC	3 cut(s)	214, 369, 388
HinfI	GANTC	1 cut(s)	221
HpaI	GTTAAC	1 cut(s)	388
HpaII	CCGG	2 cut(s)	15, 778
HphI	GGTGA	6 cut(s)	16, 79, 158, 484, 571, 745
Hpy166II	GTNNAC	5 cut(s)	87, 214, 369, 388, 575
Hpy188I	TCNGA	1 cut(s)	381
Hpy188III	TCNNGA	2 cut(s)	456, 762
Hpy8I	GTNNAC	5 cut(s)	87, 214, 369, 388, 575
HpyAV	CCTTC	2 cut(s)	136, 676
HpyCH4III	ACNGT	5 cut(s)	91, 544, 568, 635, 679
HpyCH4V	TGCA	5 cut(s)	119, 260, 479, 659, 797
HpyF10VI	GCNNNNNNNGC	3 cut(s)	596, 621, 733
HpyF3I	CTNAG	3 cut(s)	174, 651, 760
Hsp92I	GRCGYC	1 cut(s)	736
Hsp92II	CATG	3 cut(s)	338, 659, 731
KspAI	GTTAAC	1 cut(s)	388
Kzo9I	GATC	5 cut(s)	49, 305, 433, 502, 801
LmnI	GCTCC	3 cut(s)	319, 327, 601
MabI	ACCWGGT	1 cut(s)	262
MaeIII	GTNAC	3 cut(s)	91, 146, 544
MalI	GATC	5 cut(s)	51, 307, 435, 504, 803
MboI	GATC	5 cut(s)	49, 305, 433, 502, 801
MboII	GAAGA	5 cut(s)	44, 193, 221, 407, 742
MfeI	CAATTG	2 cut(s)	642, 783
MflI	RGATCY	3 cut(s)	49, 305, 433
MhlI	GDGCHC	5 cut(s)	14, 173, 324, 606, 718
MluCI	AATT	4 cut(s)	135, 487, 642, 783
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	4 cut(s)	161, 463, 562, 760
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	178
MspI	CCGG	2 cut(s)	15, 778
MspR9I	CCNGG	4 cut(s)	15, 264, 778, 779
MunI	CAATTG	2 cut(s)	642, 783
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	3 cut(s)	596, 621, 733
NciI	CCSGG	3 cut(s)	15, 778, 779
NdeII	GATC	5 cut(s)	49, 305, 433, 502, 801
NlaIII	CATG	3 cut(s)	338, 659, 731
NlaIV	GGNNCC	2 cut(s)	12, 13
NmuCI	GTSAC	1 cut(s)	146
NspI	RCATGY	1 cut(s)	659
PaeI	GCATGC	1 cut(s)	659
PctI	GAATGC	1 cut(s)	481
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
Psp124BI	GAGCTC	2 cut(s)	324, 606
Psp6I	CCWGG	1 cut(s)	262
PspEI	GGTNACC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	2 cut(s)	12, 13
PspOMI	GGGCCC	1 cut(s)	10
PspPI	GGNCC	2 cut(s)	10, 11
PstNI	CAGNNNCTG	1 cut(s)	455
PsuI	RGATCY	3 cut(s)	49, 305, 433
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	3 cut(s)	235, 294, 355
RsaNI	GTAC	3 cut(s)	234, 293, 354
RseI	CAYNNNNRTG	1 cut(s)	339
SacI	GAGCTC	2 cut(s)	324, 606
SaqAI	TTAA	1 cut(s)	387
Sau3AI	GATC	5 cut(s)	49, 305, 433, 502, 801
Sau96I	GGNCC	2 cut(s)	10, 11
ScaI	AGTACT	1 cut(s)	355
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	4 cut(s)	15, 264, 778, 779
SduI	GDGCHC	5 cut(s)	14, 173, 324, 606, 718
SexAI	ACCWGGT	1 cut(s)	262
SmaI	CCCGGG	1 cut(s)	779
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
SphI	GCATGC	1 cut(s)	659
Sse9I	AATT	4 cut(s)	135, 487, 642, 783
SsiI	CCGC	1 cut(s)	599
SstI	GAGCTC	2 cut(s)	324, 606
StyD4I	CCNGG	4 cut(s)	13, 262, 776, 777
StyI	CCWWGG	1 cut(s)	813
TaaI	ACNGT	5 cut(s)	91, 544, 568, 635, 679
TasI	AATT	4 cut(s)	135, 487, 642, 783
TatI	WGTACW	1 cut(s)	353
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	4 cut(s)	547, 571, 592, 684
TseFI	GTSAC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	642
TspMI	CCCGGG	1 cut(s)	777
TspRI	CASTG	4 cut(s)	547, 571, 592, 684
XapI	RAATTY	1 cut(s)	487
XceI	RCATGY	1 cut(s)	659
XmaI	CCCGGG	1 cut(s)	777
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.