FvH4_4g16150

Mitochondrial outer membrane protein porin of 34

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0003226
Physical Location & Seq
Forward (+)
20066795 .. 20067380
586 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16150.t1

Sequence Viewer

Length: 411 bp
ATGGTTGATCAACCTTGTCCTGGTGTTAAGGCAATTCTCAGCTTCAAAGTTCCTGATCAGAGCTCAGGCAAGGTAAGAATGTTGTTTTGGGTTTTTCATTATTTGAATGAGAAAGGTGATGTGGTCAGCAGATCTTTCTATCACAATCTCTATCCAGAACAAAACACTGTTGTAGGAGTTGAGGTCACCCACAGATTTTCCAACAGTGAGAATACGATCACTCTCGGTGCTCAGCATGCCCTGGATTCATTGACCTATGTCAAGACACGTGTGAACAACTTTGGCAAGGCCAATGCTCTTATCCAGCATGAGTGGCGCCCAAAATCATTTTTCACCATTTCTAGAGAGGTAGACACTAGAGCCATTGAGAAGAGCGCCAAGATTGGATTGGTTCTTGCTCTCAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005773 GO:0005774 GO:0005886 GO:0006091 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008308 GO:0008509 GO:0009060 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010029 GO:0010033 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0015980 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031966 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032592 GO:0034220 GO:0042170 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045333 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051704 GO:0051707 GO:0055085 GO:0055114 GO:0065007 GO:0070013 GO:0071944 GO:0098542 GO:0098573 GO:0098588 GO:0098656 GO:0098805 GO:1900140 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166
Pfam Domains
Protein Families
Porin_3

Protein Analysis

137

Amino Acids

15.41

Weight (kDa)

9.48

Isoelectric Point (pI)

28.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Porin_3 PF01459 33 - 129 5.3e-25 Eukaryotic porin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 315
AccI GTMKAC 1 cut(s) 351
AcvI CACGTG 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 316
AfiI CCNNNNNNNGG 1 cut(s) 20
AflIII ACRYGT 2 cut(s) 266, 268
AgsI TTSAA 2 cut(s) 46, 106
AjnI CCWGG 2 cut(s) 19, 240
AjuI GAANNNNNNNTTGG 2 cut(s) 70, 102
AluBI AGCT 2 cut(s) 42, 63
AluI AGCT 2 cut(s) 42, 63
Alw21I GWGCWC 2 cut(s) 65, 232
AoxI GGCC 1 cut(s) 288
AspLEI GCGC 2 cut(s) 318, 377
AsuHPI GGTGA 3 cut(s) 128, 178, 325
BanI GGYRCC 1 cut(s) 315
BanII GRGCYC 1 cut(s) 65
BbrPI CACGTG 1 cut(s) 269
Bbv12I GWGCWC 2 cut(s) 65, 232
BciT130I CCWGG 2 cut(s) 21, 242
BclI TGATCA 2 cut(s) 7, 55
BfaI CTAG 2 cut(s) 342, 357
BfoI RGCGCY 2 cut(s) 319, 378
BglII AGATCT 1 cut(s) 131
BlpI GCTNAGC 1 cut(s) 231
Bme1390I CCNGG 2 cut(s) 21, 242
BmiI GGNNCC 1 cut(s) 317
BmrFI CCNGG 2 cut(s) 21, 242
BoxI GACNNNNGTC 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 64
Bpu1102I GCTNAGC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 386
BsaAI YACGTR 1 cut(s) 269
BsaHI GRCGYC 1 cut(s) 316
BsaJI CCNNGG 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 20
BseBI CCWGG 2 cut(s) 21, 242
BseDI CCNNGG 1 cut(s) 240
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 3 cut(s) 52, 78, 245
BshFI GGCC 1 cut(s) 290
BshNI GGYRCC 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 65, 232
BslI CCNNNNNNNGG 1 cut(s) 20
BsnI GGCC 1 cut(s) 290
Bsp1286I GDGCHC 2 cut(s) 65, 232
Bsp143I GATC 4 cut(s) 7, 55, 131, 216
Bsp1720I GCTNAGC 1 cut(s) 231
BspANI GGCC 1 cut(s) 290
BspCNI CTCAG 3 cut(s) 51, 77, 244
BspLI GGNNCC 1 cut(s) 317
BspQI GCTCTTC 1 cut(s) 365
BspT107I GGYRCC 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 4 cut(s) 7, 55, 131, 216
BssNI GRCGYC 1 cut(s) 316
Bst2UI CCWGG 2 cut(s) 21, 242
Bst4CI ACNGT 2 cut(s) 169, 206
Bst6I CTCTTC 1 cut(s) 365
BstACI GRCGYC 1 cut(s) 316
BstBAI YACGTR 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 3 cut(s) 38, 64, 231
BstEII GGTNACC 1 cut(s) 184
BstH2I RGCGCY 2 cut(s) 319, 378
BstHHI GCGC 2 cut(s) 318, 377
BstKTI GATC 4 cut(s) 10, 58, 134, 219
BstMBI GATC 4 cut(s) 7, 55, 131, 216
BstMWI GCNNNNNNNGC 2 cut(s) 236, 313
BstNI CCWGG 2 cut(s) 21, 242
BstNSI RCATGY 1 cut(s) 239
BstPAI GACNNNNGTC 1 cut(s) 257
BstPI GGTNACC 1 cut(s) 184
BstSCI CCNGG 2 cut(s) 19, 240
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 1 cut(s) 290
BtsIMutI CAGTG 2 cut(s) 165, 211
Cac8I GCNNGC 1 cut(s) 237
CfoI GCGC 2 cut(s) 318, 377
CviAII CATG 3 cut(s) 236, 308, 408
CviJI RGCY 5 cut(s) 42, 63, 290, 362, 406
CviKI_1 RGCY 5 cut(s) 42, 63, 290, 362, 406
DdeI CTNAG 3 cut(s) 38, 64, 231
DinI GGCGCC 1 cut(s) 317
DpnI GATC 4 cut(s) 9, 57, 133, 218
DpnII GATC 4 cut(s) 7, 55, 131, 216
Eam1104I CTCTTC 1 cut(s) 365
EarI CTCTTC 1 cut(s) 365
Ecl136II GAGCTC 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 65
Eco53kI GAGCTC 1 cut(s) 63
Eco72I CACGTG 1 cut(s) 269
Eco91I GGTNACC 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 63
EcoO65I GGTNACC 1 cut(s) 184
EcoRII CCWGG 2 cut(s) 19, 240
EcoT38I GRGCYC 1 cut(s) 65
EgeI GGCGCC 1 cut(s) 317
EheI GGCGCC 1 cut(s) 317
FaeI CATG 3 cut(s) 239, 311, 411
FaiI YATR 4 cut(s) 237, 258, 309, 409
FatI CATG 3 cut(s) 235, 307, 407
FbaI TGATCA 2 cut(s) 7, 55
FblI GTMKAC 1 cut(s) 351
FriOI GRGCYC 1 cut(s) 65
FspBI CTAG 2 cut(s) 342, 357
GlaI GCGC 2 cut(s) 317, 376
HaeII RGCGCY 2 cut(s) 319, 378
HaeIII GGCC 1 cut(s) 290
HhaI GCGC 2 cut(s) 318, 377
Hin1I GRCGYC 1 cut(s) 316
Hin1II CATG 3 cut(s) 239, 311, 411
Hin6I GCGC 2 cut(s) 316, 375
HinP1I GCGC 2 cut(s) 316, 375
HinfI GANTC 1 cut(s) 245
HphI GGTGA 3 cut(s) 128, 178, 325
Hpy166II GTNNAC 2 cut(s) 274, 352
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 4 cut(s) 53, 155, 262, 342
Hpy8I GTNNAC 2 cut(s) 274, 352
HpyCH4III ACNGT 2 cut(s) 169, 206
HpyCH4IV ACGT 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 313
HpyF3I CTNAG 3 cut(s) 38, 64, 231
HpySE526I ACGT 1 cut(s) 268
Hsp92I GRCGYC 1 cut(s) 316
Hsp92II CATG 3 cut(s) 239, 311, 411
HspAI GCGC 2 cut(s) 316, 375
KasI GGCGCC 1 cut(s) 315
Ksp22I TGATCA 2 cut(s) 7, 55
Kzo9I GATC 4 cut(s) 7, 55, 131, 216
LguI GCTCTTC 1 cut(s) 365
LpnPI CCDG 8 cut(s) 6, 33, 51, 66, 168, 227, 254, 317
MaeI CTAG 2 cut(s) 342, 357
MaeII ACGT 1 cut(s) 268
MaeIII GTNAC 1 cut(s) 184
MalI GATC 4 cut(s) 9, 57, 133, 218
MboI GATC 4 cut(s) 7, 55, 131, 216
MboII GAAGA 1 cut(s) 382
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 2 cut(s) 65, 232
MluCI AATT 1 cut(s) 33
Mly113I GGCGCC 1 cut(s) 316
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 2 cut(s) 175, 340
MseI TTAA 1 cut(s) 27
MspR9I CCNGG 2 cut(s) 21, 242
MvaI CCWGG 2 cut(s) 21, 242
MwoI GCNNNNNNNGC 2 cut(s) 236, 313
NarI GGCGCC 1 cut(s) 316
NdeII GATC 4 cut(s) 7, 55, 131, 216
NlaIII CATG 3 cut(s) 239, 311, 411
NlaIV GGNNCC 1 cut(s) 317
NmuCI GTSAC 1 cut(s) 184
NspI RCATGY 1 cut(s) 239
PaeI GCATGC 1 cut(s) 239
PciSI GCTCTTC 1 cut(s) 365
PfeI GAWTC 1 cut(s) 245
PluTI GGCGCC 1 cut(s) 319
PmaCI CACGTG 1 cut(s) 269
PmlI CACGTG 1 cut(s) 269
Ppu21I YACGTR 1 cut(s) 269
PshAI GACNNNNGTC 1 cut(s) 257
Psp124BI GAGCTC 1 cut(s) 65
Psp6I CCWGG 2 cut(s) 19, 240
PspCI CACGTG 1 cut(s) 269
PspEI GGTNACC 1 cut(s) 184
PspGI CCWGG 2 cut(s) 19, 240
PspN4I GGNNCC 1 cut(s) 317
PsuI RGATCY 1 cut(s) 131
SacI GAGCTC 1 cut(s) 65
SapI GCTCTTC 1 cut(s) 365
SaqAI TTAA 1 cut(s) 27
Sau3AI GATC 4 cut(s) 7, 55, 131, 216
ScrFI CCNGG 2 cut(s) 21, 242
SduI GDGCHC 2 cut(s) 65, 232
SetI ASST 9 cut(s) 16, 44, 65, 75, 118, 186, 257, 271, 351
SfoI GGCGCC 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SphI GCATGC 1 cut(s) 239
Sse9I AATT 1 cut(s) 33
SspDI GGCGCC 1 cut(s) 315
SspMI CTAG 2 cut(s) 342, 357
SstI GAGCTC 1 cut(s) 65
StyD4I CCNGG 2 cut(s) 19, 240
TaaI ACNGT 2 cut(s) 169, 206
TaiI ACGT 1 cut(s) 271
TasI AATT 1 cut(s) 33
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 2 cut(s) 172, 211
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 86, 237
TspRI CASTG 2 cut(s) 172, 211
XbaI TCTAGA 1 cut(s) 341
XceI RCATGY 1 cut(s) 239
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
XmiI GTMKAC 1 cut(s) 351
XspI CTAG 2 cut(s) 342, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.