Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003226

Physical Location & Seq

Genomic Coordinates Reverse (-)

61399219 .. 61402128

Gene Structure 2910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00381400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTGAAGGGTCCGGGTCTCTACTCAGATATCGGCAAGAAAGCCAGAGATCTTCTTTACAGGGATTACCAGACCGACCACAAGTTCACCGTCACCACTTACACTTCTGCCGGAGTTGCAATCACTTCAAGTGGAATTAAGAAAGGTGATCTTCTTTTGGGGGATGTGAGCACTCAGCTGAAGAACAAGAACATCACAACTGATGTTAAAGTTGATACCAATTCGAACCTTCTCACAACCATTACTATTGATGAACCCGCACCTGGTCTCAAGGCAATCTTTAGCTTCATCGTACCTGATCAAAAATCTGGAAAGGTGGAACTTCAATACCAGCATGAGTATGCTGGAATAAGTACTAGCCTTGGATTGACTGCCAACCCTGTTATTAACTTTTCTGGTGTTGTTGGGAACACTGCTCTCTCTCTTGGAACAGATGTTTCCTTTGACACTGCCTCTGGGAACTTGACCAAACTCAATGCTGGGTTGAATTTCATCCATACTGACCTCATTGCCTCCCTGCTTGTGTTCTCTATGGAAAGAACTGTATTCTTCTTGAGATGCTTCTTGTGTTTGATCTATGGATTCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009526 GO:0009527 GO:0009536 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0034220 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098656 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

196

Amino Acids

21.18

Weight (kDa)

6.81

Isoelectric Point (pI)

10.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	4 - 175	2.1e-50	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01280 AT5G15090 AT5G15090
fragaria_vesca	FvH4_4g16150 FvH4_4g31911 FvH4_6g49250
malus_domestica	MD09G1047200.v1.1 MD13G1078700.v1.1 MD16G1078300.v1.1 MD17G1047400.v1.1
prunus_persica	Prupe.1G268200_v2.0.a1 Prupe.3G271800_v2.0.a1
pyrus_communis	pycom111g03800 pycom13g06830 pycom16g06780 pycom17g04220
rosa_chinensis	RchiOBHm_Chr2g0169111 RchiOBHm_Chr4g0440571
rosa_laevigata	RLG00000006167 RLG00000021835
rosa_multiflora	Rmu_sc0011312.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082430 Rroxscaffold_5G00381400
rosa_rugosa	Rorug02G0537000 Rorug04G0326700
rosa_samantha	Rh2AG608900 Rh2BG621800 Rh2CG590500 Rh2DG632400 Rh4AG378500 Rh4AG378600 Rh4BG391200 Rh4CG405900 Rh4DG385100
rosa_wichuraiana	Rw2G050490 Rw4G032410 Rw4G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	487
AcuI	CTGAAG	1 cut(s)	200
AfaI	GTAC	2 cut(s)	294, 355
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	3 cut(s)	129, 326, 487
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	2 cut(s)	178, 285
AluI	AGCT	2 cut(s)	178, 285
Alw21I	GWGCWC	1 cut(s)	173
Alw26I	GTCTC	2 cut(s)	23, 272
ApoI	RAATTY	1 cut(s)	487
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	15
AsuHPI	GGTGA	4 cut(s)	16, 79, 85, 158
AsuII	TTCGAA	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	264
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	15
BcoDI	GTCTC	2 cut(s)	23, 272
BfaI	CTAG	1 cut(s)	357
BglII	AGATCT	1 cut(s)	49
BmcAI	AGTACT	1 cut(s)	355
Bme1390I	CCNGG	2 cut(s)	15, 264
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	2 cut(s)	15, 264
BmsI	GCATC	1 cut(s)	548
Bpu14I	TTCGAA	1 cut(s)	224
BpuEI	CTTGAG	2 cut(s)	254, 574
BpuMI	CCSGG	1 cut(s)	15
BsaI	GGTCTC	2 cut(s)	23, 272
BsaJI	CCNNGG	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	2 cut(s)	169, 492
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	2 cut(s)	39, 188
BseYI	CCCAGC	1 cut(s)	479
BsiHKAI	GWGCWC	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	14, 111
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	2 cut(s)	23, 272
Bso31I	GGTCTC	2 cut(s)	23, 272
Bsp119I	TTCGAA	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	4 cut(s)	49, 148, 298, 573
BspACI	CCGC	1 cut(s)	258
BspCNI	CTCAG	2 cut(s)	38, 187
BspLI	GGNNCC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	224
BspTNI	GGTCTC	2 cut(s)	23, 272
BsrDI	GCAATG	1 cut(s)	507
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	4 cut(s)	49, 148, 298, 573
BssT1I	CCWWGG	1 cut(s)	361
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	91, 544
BstBI	TTCGAA	1 cut(s)	224
BstDEI	CTNAG	2 cut(s)	25, 174
BstF5I	GGATG	2 cut(s)	169, 492
BstKTI	GATC	4 cut(s)	52, 151, 301, 576
BstMAI	GTCTC	2 cut(s)	23, 272
BstMBI	GATC	4 cut(s)	49, 148, 298, 573
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	2 cut(s)	13, 262
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	169, 492
BtsI	GCAGTG	2 cut(s)	411, 447
BtsIMutI	CAGTG	2 cut(s)	411, 447
Cfr13I	GGNCC	1 cut(s)	11
CsiI	ACCWGGT	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	293, 354
CviAII	CATG	1 cut(s)	335
CviJI	RGCY	4 cut(s)	44, 178, 285, 360
CviKI_1	RGCY	4 cut(s)	44, 178, 285, 360
CviQI	GTAC	2 cut(s)	293, 354
DdeI	CTNAG	2 cut(s)	25, 174
DpnI	GATC	4 cut(s)	51, 150, 300, 575
DpnII	GATC	4 cut(s)	49, 148, 298, 573
Eco130I	CCWWGG	1 cut(s)	361
Eco31I	GGTCTC	2 cut(s)	23, 272
Eco32I	GATATC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	262
EcoRV	GATATC	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	1 cut(s)	338
FaiI	YATR	5 cut(s)	336, 342, 498, 533, 579
FalI	AAGNNNNNCTT	4 cut(s)	135, 167, 263, 295
FatI	CATG	1 cut(s)	334
FauI	CCCGC	1 cut(s)	265
FbaI	TGATCA	1 cut(s)	298
FokI	GGATG	2 cut(s)	176, 479
FspBI	CTAG	1 cut(s)	357
GsaI	CCCAGC	1 cut(s)	483
HapII	CCGG	2 cut(s)	14, 111
Hin1II	CATG	1 cut(s)	338
HinfI	GANTC	1 cut(s)	582
HpaII	CCGG	2 cut(s)	14, 111
HphI	GGTGA	4 cut(s)	16, 79, 85, 158
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	2 cut(s)	309, 553
Hpy8I	GTNNAC	1 cut(s)	87
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	2 cut(s)	91, 544
HpyCH4V	TGCA	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	2 cut(s)	25, 174
Hsp92II	CATG	1 cut(s)	338
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	49, 148, 298, 573
LweI	GCATC	1 cut(s)	548
MabI	ACCWGGT	1 cut(s)	262
MaeI	CTAG	1 cut(s)	357
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	4 cut(s)	51, 150, 300, 575
MboI	GATC	4 cut(s)	49, 148, 298, 573
MboII	GAAGA	4 cut(s)	44, 143, 193, 541
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	3 cut(s)	135, 220, 487
MnlI	CCTC	3 cut(s)	463, 515, 523
MseI	TTAA	3 cut(s)	138, 207, 387
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	178
MspI	CCGG	2 cut(s)	14, 111
MspR9I	CCNGG	2 cut(s)	15, 264
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	116
NciI	CCSGG	1 cut(s)	15
NdeII	GATC	4 cut(s)	49, 148, 298, 573
NlaIII	CATG	1 cut(s)	338
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	91
NspV	TTCGAA	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	582
Psp6I	CCWGG	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	2 cut(s)	294, 355
RsaNI	GTAC	2 cut(s)	293, 354
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	3 cut(s)	138, 207, 387
Sau3AI	GATC	4 cut(s)	49, 148, 298, 573
Sau96I	GGNCC	1 cut(s)	11
ScaI	AGTACT	1 cut(s)	355
ScrFI	CCNGG	2 cut(s)	15, 264
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	8 cut(s)	148, 180, 231, 265, 287, 298, 318, 507
SexAI	ACCWGGT	1 cut(s)	262
SfaNI	GCATC	1 cut(s)	548
SfuI	TTCGAA	1 cut(s)	224
SinI	GGWCC	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	2 cut(s)	269, 553
SmoI	CTYRAG	2 cut(s)	269, 553
Sse9I	AATT	3 cut(s)	135, 220, 487
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	2 cut(s)	13, 262
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	2 cut(s)	91, 544
TaqI	TCGA	1 cut(s)	224
TaqII	GACCGA	1 cut(s)	89
TasI	AATT	3 cut(s)	135, 220, 487
TatI	WGTACW	1 cut(s)	353
TfiI	GAWTC	1 cut(s)	582
Tru1I	TTAA	3 cut(s)	138, 207, 387
Tru9I	TTAA	3 cut(s)	138, 207, 387
TscAI	CASTG	2 cut(s)	418, 454
TseFI	GTSAC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	3 cut(s)	267, 277, 481
TspRI	CASTG	2 cut(s)	418, 454
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	1 cut(s)	487
XspI	CTAG	1 cut(s)	357
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.