MD17G1047400.v1.1

Mitochondrial outer membrane protein porin of 34

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0003226
Physical Location & Seq
Reverse (-)
3453349 .. 3454837
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1047400.v1.1.491

Sequence Viewer

Length: 252 bp
ATGGTGGGACCTGGGCTTTACACCGACATCGGCAAGAAAGCCAGAGATCTTCTGTACAAGGATTACCAGAGCGACAAGAAGTTCACCATCACTACCTTCTCTCCCACTGGAGTGGCTATCACCACTTCAGGAACCAACAAAGGTGAGCTTTTTCTGGGTGATGTGAACACTCAATTGAAAAACAAGAACGTCACAACTGATATCAAAGTTGACACCGACTCCAATGTAACTGTCCACCACTATTACGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005773 GO:0005774 GO:0005886 GO:0006091 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008308 GO:0008509 GO:0009060 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010029 GO:0010033 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0015980 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031966 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032592 GO:0034220 GO:0042170 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045333 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051704 GO:0051707 GO:0055085 GO:0055114 GO:0065007 GO:0070013 GO:0071944 GO:0098542 GO:0098573 GO:0098588 GO:0098656 GO:0098805 GO:1900140 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166
Pfam Domains
Protein Families
Porin_3

Protein Analysis

84

Amino Acids

9.15

Weight (kDa)

7.95

Isoelectric Point (pI)

15.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Porin_3 PF01459 3 - 78 3.2e-19 Eukaryotic porin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 1 cut(s) 56
AgsI TTSAA 1 cut(s) 178
AjnI CCWGG 1 cut(s) 10
AleI CACNNNNGTG 1 cut(s) 110
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 4 cut(s) 76, 112, 155, 170
AvaII GGWCC 1 cut(s) 8
BccI CCATC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 12
BglII AGATCT 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 2 cut(s) 9, 133
BmrFI CCNGG 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 11
BsaXI ACNNNNNCTCC 4 cut(s) 85, 115, 203, 233
Bse1I ACTGG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 11
BseNI ACTGG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 21
Bsp1407I TGTACA 1 cut(s) 54
Bsp143I GATC 1 cut(s) 46
BspLI GGNNCC 2 cut(s) 9, 133
BsrGI TGTACA 1 cut(s) 54
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 232, 248
BstAUI TGTACA 1 cut(s) 54
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 112
BstYI RGATCY 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 8
Csp6I GTAC 1 cut(s) 55
CviJI RGCY 4 cut(s) 16, 41, 116, 148
CviKI_1 RGCY 4 cut(s) 16, 41, 116, 148
CviQI GTAC 1 cut(s) 55
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eco32I GATATC 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 10
EcoRV GATATC 1 cut(s) 202
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FaqI GGGAC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 129
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 1 cut(s) 218
HphI GGTGA 4 cut(s) 76, 112, 155, 170
Hpy166II GTNNAC 4 cut(s) 84, 166, 211, 235
Hpy188III TCNNGA 1 cut(s) 129
Hpy8I GTNNAC 4 cut(s) 84, 166, 211, 235
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 2 cut(s) 232, 248
HpyCH4IV ACGT 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 189
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 6 cut(s) 24, 55, 80, 93, 114, 140
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 2 cut(s) 190, 226
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 1 cut(s) 41
MfeI CAATTG 1 cut(s) 173
MflI RGATCY 1 cut(s) 46
MluCI AATT 1 cut(s) 173
MlyI GAGTC 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 12
MunI CAATTG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 12
NdeII GATC 1 cut(s) 46
NlaIV GGNNCC 2 cut(s) 9, 133
NmuCI GTSAC 1 cut(s) 190
OliI CACNNNNGTG 1 cut(s) 110
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PpuMI RGGWCCY 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 2 cut(s) 9, 133
PspPI GGNCC 1 cut(s) 8
PspPPI RGGWCCY 1 cut(s) 8
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 110
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 12
SetI ASST 5 cut(s) 13, 98, 145, 150, 192
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 110
Sse9I AATT 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 232, 248
TaiI ACGT 1 cut(s) 192
TasI AATT 1 cut(s) 173
TatI WGTACW 1 cut(s) 54
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 190
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.