Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003226

Physical Location & Seq

Genomic Coordinates Reverse (-)

68553614 .. 68553943

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG378500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGATTCTGTTGATGAACACAGGAATGACAAGGGTGATACTCTCACAGCTTCCTATTACCAGACTGTTAGCCCCCTTACTAACACTGCTGTTGGTGCTGAGATGTCCCATAGCTTTTCTAGCAATGAGAACACTTTCACAATCGGCACTCAGCATGCACTTGACCCCTTAACCTCAGTGAAGGCTCGGGTGAACAACTATGGCAGGGCAAGTGCTCTTATCCAGCATGAGTGGCGTCCCAAGTCCTTGTTCACTATCTCAGGAGAGGTTGACACGAGGGCAATTGAGAAGAGTGCAAAGATCGGTTTGGCCTTGGCACTCAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009526 GO:0009527 GO:0009536 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0034220 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098656 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

109

Amino Acids

11.88

Weight (kDa)

6.4

Isoelectric Point (pI)

11.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	9 - 102	1.4e-32	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01280 AT5G15090 AT5G15090
fragaria_vesca	FvH4_4g16150 FvH4_4g31911 FvH4_6g49250
malus_domestica	MD09G1047200.v1.1 MD13G1078700.v1.1 MD16G1078300.v1.1 MD17G1047400.v1.1
prunus_persica	Prupe.1G268200_v2.0.a1 Prupe.3G271800_v2.0.a1
pyrus_communis	pycom111g03800 pycom13g06830 pycom16g06780 pycom17g04220
rosa_chinensis	RchiOBHm_Chr2g0169111 RchiOBHm_Chr4g0440571
rosa_laevigata	RLG00000006167 RLG00000021835
rosa_multiflora	Rmu_sc0011312.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082430 Rroxscaffold_5G00381400
rosa_rugosa	Rorug02G0537000 Rorug04G0326700
rosa_samantha	Rh2AG608900 Rh2BG621800 Rh2CG590500 Rh2DG632400 Rh4AG378500 Rh4AG378600 Rh4BG391200 Rh4CG405900 Rh4DG385100
rosa_wichuraiana	Rw2G050490 Rw4G032410 Rw4G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	235
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	2 cut(s)	50, 114
AluI	AGCT	2 cut(s)	50, 114
Alw21I	GWGCWC	1 cut(s)	217
Ama87I	CYCGRG	1 cut(s)	186
AoxI	GGCC	1 cut(s)	309
Asp700I	GAANNNNTTC	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	47, 202
AvaI	CYCGRG	1 cut(s)	186
BauI	CACGAG	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	217
BfaI	CTAG	1 cut(s)	120
BmeT110I	CYCGRG	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	312
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	4 cut(s)	90, 164, 189, 273
BshFI	GGCC	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	186
BslFI	GGGAC	2 cut(s)	91, 222
BsmFI	GGGAC	2 cut(s)	91, 222
BsnI	GGCC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	300
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	4 cut(s)	91, 163, 188, 272
BsrDI	GCAATG	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	1 cut(s)	300
BssNI	GRCGYC	1 cut(s)	235
BssSI	CACGAG	1 cut(s)	274
BssT1I	CCWWGG	1 cut(s)	312
Bst2BI	CACGAG	1 cut(s)	274
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	4 cut(s)	99, 150, 175, 259
BstKTI	GATC	1 cut(s)	303
BstMBI	GATC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 120, 232
BstNSI	RCATGY	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	311
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	84, 183
Cac8I	GCNNGC	1 cut(s)	156
CseI	GACGC	1 cut(s)	224
CviAII	CATG	3 cut(s)	155, 227, 327
CviJI	RGCY	6 cut(s)	50, 72, 114, 185, 311, 325
CviKI_1	RGCY	6 cut(s)	50, 72, 114, 185, 311, 325
DdeI	CTNAG	4 cut(s)	99, 150, 175, 259
DpnI	GATC	1 cut(s)	302
DpnII	GATC	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	312
Eco88I	CYCGRG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	3 cut(s)	158, 230, 330
FaiI	YATR	5 cut(s)	111, 156, 201, 228, 328
FaqI	GGGAC	2 cut(s)	91, 222
FatI	CATG	3 cut(s)	154, 226, 326
FspBI	CTAG	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	311
HgaI	GACGC	1 cut(s)	224
Hin1I	GRCGYC	1 cut(s)	235
Hin1II	CATG	3 cut(s)	158, 230, 330
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	2 cut(s)	47, 202
Hpy166II	GTNNAC	3 cut(s)	193, 252, 271
Hpy188III	TCNNGA	1 cut(s)	261
Hpy8I	GTNNAC	3 cut(s)	193, 252, 271
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	158, 296
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 120, 232
HpyF3I	CTNAG	4 cut(s)	99, 150, 175, 259
Hsp92I	GRCGYC	1 cut(s)	235
Hsp92II	CATG	3 cut(s)	158, 230, 330
Kzo9I	GATC	1 cut(s)	300
LpnPI	CCDG	5 cut(s)	7, 74, 190, 236, 246
MaeI	CTAG	1 cut(s)	120
MalI	GATC	1 cut(s)	302
MboI	GATC	1 cut(s)	300
MboII	GAAGA	1 cut(s)	301
MfeI	CAATTG	1 cut(s)	282
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	1 cut(s)	282
MnlI	CCTC	3 cut(s)	184, 259, 270
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	1 cut(s)	170
MslI	CAYNNNNRTG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	282
MwoI	GCNNNNNNNGC	3 cut(s)	95, 120, 232
NdeII	GATC	1 cut(s)	300
NlaIII	CATG	3 cut(s)	158, 230, 330
NspI	RCATGY	1 cut(s)	158
PaeI	GCATGC	1 cut(s)	158
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	5
RseI	CAYNNNNRTG	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	170
Sau3AI	GATC	1 cut(s)	300
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	4 cut(s)	52, 116, 176, 270
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SphI	GCATGC	1 cut(s)	158
Sse9I	AATT	1 cut(s)	282
SspMI	CTAG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	67
TasI	AATT	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	2 cut(s)	91, 183
TspDTI	ATGAA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	91, 183
XceI	RCATGY	1 cut(s)	158
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.