Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0003226

Physical Location & Seq

Genomic Coordinates Reverse (-)

2308838 .. 2310657

Gene Structure 1820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTGGGACCTGGGCTTTACACCGACATCGGCAAGAAAGCCAGAGATCTTCTGTACAGGGATTACCAGAGTGACCATAAGTTCACCATCACCACCTTCTCTCCCACTGGAGTGGCTATCACTTCTTCAGGAACAAAGAAAGGTGAGCTGTTTCTGGCTGATGTGAACACTCAGTTGAAGAACAAGAATGTCACAACTGATGTCAAAGTTGACACCGACTCCAATCTGTCCACCACTATTACGGTTGATCAACCTGCTCCTGGCCTGAAGGCAATCTTTAGCTTCAAAGTTCCTGATCAGAGGTCTGGCAAGGTGGAACTCCAATATCTGCATGACTATGCAGGGATAAGCTCCAGTGTTGGTTTGACAGCGAACCCTATTGTTAACTTCTCTGGTGTTATTGGAACCAATCAGCTTGCACTTGGTACTGATCTGTCATTCGACACCAAGACCGGGAATTTGACTAAATGCAATGCTGGACTGAGCTTCTCCAATGCTCGATCTAGTCGCTGCATTGACCCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005773 GO:0005774 GO:0005886 GO:0006091 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008308 GO:0008509 GO:0009060 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010029 GO:0010033 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0015980 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031966 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032592 GO:0034220 GO:0042170 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045333 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051704 GO:0051707 GO:0055085 GO:0055114 GO:0065007 GO:0070013 GO:0071944 GO:0098542 GO:0098573 GO:0098588 GO:0098656 GO:0098805 GO:1900140 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

176

Amino Acids

18.75

Weight (kDa)

7.73

Isoelectric Point (pI)

19.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01280 AT5G15090 AT5G15090
fragaria_vesca	FvH4_4g16150 FvH4_4g31911 FvH4_6g49250
malus_domestica	MD09G1047200.v1.1 MD13G1078700.v1.1 MD16G1078300.v1.1 MD17G1047400.v1.1
prunus_persica	Prupe.1G268200_v2.0.a1 Prupe.3G271800_v2.0.a1
pyrus_communis	pycom111g03800 pycom13g06830 pycom16g06780 pycom17g04220
rosa_chinensis	RchiOBHm_Chr2g0169111 RchiOBHm_Chr4g0440571
rosa_laevigata	RLG00000006167 RLG00000021835
rosa_multiflora	Rmu_sc0011312.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082430 Rroxscaffold_5G00381400
rosa_rugosa	Rorug02G0537000 Rorug04G0326700
rosa_samantha	Rh2AG608900 Rh2BG621800 Rh2CG590500 Rh2DG632400 Rh4AG378500 Rh4AG378600 Rh4BG391200 Rh4CG405900 Rh4DG385100
rosa_wichuraiana	Rw2G050490 Rw4G032410 Rw4G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	457
AcuI	CTGAAG	2 cut(s)	111, 287
AfaI	GTAC	2 cut(s)	56, 427
AfiI	CCNNNNNNNGG	2 cut(s)	260, 453
AgsI	TTSAA	2 cut(s)	178, 286
AjnI	CCWGG	2 cut(s)	10, 259
AleI	CACNNNNGTG	1 cut(s)	110
AluBI	AGCT	5 cut(s)	148, 282, 351, 415, 486
AluI	AGCT	5 cut(s)	148, 282, 351, 415, 486
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	1 cut(s)	510
ApoI	RAATTY	1 cut(s)	457
ArsI	GACNNNNNNTTYG	2 cut(s)	442, 474
AspS9I	GGNCC	1 cut(s)	8
AsuC2I	CCSGG	1 cut(s)	454
AsuHPI	GGTGA	3 cut(s)	76, 82, 155
AvaII	GGWCC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	2 cut(s)	12, 261
BclI	TGATCA	2 cut(s)	247, 295
BcnI	CCSGG	1 cut(s)	454
BfaI	CTAG	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	262
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	1 cut(s)	511
BlsI	GCNGC	1 cut(s)	512
Bme1390I	CCNGG	3 cut(s)	12, 261, 454
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	2 cut(s)	9, 406
BmrFI	CCNGG	3 cut(s)	12, 261, 454
BpmI	CTGGAG	2 cut(s)	129, 337
BpuMI	CCSGG	1 cut(s)	454
BsaJI	CCNNGG	1 cut(s)	11
BsaXI	ACNNNNNCTCC	4 cut(s)	85, 115, 203, 233
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 453
Bse1I	ACTGG	2 cut(s)	112, 354
Bse3DI	GCAATG	1 cut(s)	478
BseBI	CCWGG	2 cut(s)	12, 261
BseDI	CCNNGG	1 cut(s)	11
BseLI	CCNNNNNNNGG	2 cut(s)	260, 453
BseMI	GCAATG	1 cut(s)	478
BseMII	CTCAG	2 cut(s)	185, 473
BseNI	ACTGG	2 cut(s)	112, 354
BseXI	GCAGC	1 cut(s)	497
BshFI	GGCC	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	453
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	2 cut(s)	260, 453
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	264
Bsp1407I	TGTACA	1 cut(s)	54
Bsp143I	GATC	5 cut(s)	46, 247, 295, 430, 500
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	2 cut(s)	184, 474
BspLI	GGNNCC	2 cut(s)	9, 406
BspMI	ACCTGC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	478
BsrGI	TGTACA	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	112, 354
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	5 cut(s)	46, 247, 295, 430, 500
Bst2UI	CCWGG	2 cut(s)	12, 261
Bst4CI	ACNGT	1 cut(s)	244
BstAUI	TGTACA	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	2 cut(s)	171, 482
BstKTI	GATC	5 cut(s)	49, 250, 298, 433, 503
BstMBI	GATC	5 cut(s)	46, 247, 295, 430, 500
BstNI	CCWGG	2 cut(s)	12, 261
BstSCI	CCNGG	3 cut(s)	10, 259, 452
BstV1I	GCAGC	1 cut(s)	497
BstX2I	RGATCY	1 cut(s)	46
BstXI	CCANNNNNNTGG	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	264
BtsIMutI	CAGTG	2 cut(s)	105, 361
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	417
Cfr13I	GGNCC	1 cut(s)	8
Csp6I	GTAC	2 cut(s)	55, 426
CviAII	CATG	1 cut(s)	332
CviQI	GTAC	2 cut(s)	55, 426
DdeI	CTNAG	2 cut(s)	171, 482
DpnI	GATC	5 cut(s)	48, 249, 297, 432, 502
DpnII	GATC	5 cut(s)	46, 247, 295, 430, 500
Eco47I	GGWCC	1 cut(s)	8
Eco57I	CTGAAG	2 cut(s)	111, 287
EcoO109I	RGGNCCY	1 cut(s)	8
EcoRII	CCWGG	2 cut(s)	10, 259
FaeI	CATG	1 cut(s)	335
FaiI	YATR	3 cut(s)	78, 333, 339
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	1 cut(s)	331
FbaI	TGATCA	2 cut(s)	247, 295
Fnu4HI	GCNGC	1 cut(s)	511
Fsp4HI	GCNGC	1 cut(s)	511
FspBI	CTAG	1 cut(s)	504
GluI	GCNGC	1 cut(s)	511
GsuI	CTGGAG	2 cut(s)	129, 337
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	1 cut(s)	453
Hin1II	CATG	1 cut(s)	335
HincII	GTYRAC	2 cut(s)	211, 385
HindII	GTYRAC	2 cut(s)	211, 385
HinfI	GANTC	1 cut(s)	218
HpaI	GTTAAC	1 cut(s)	385
HpaII	CCGG	1 cut(s)	453
HphI	GGTGA	3 cut(s)	76, 82, 155
Hpy166II	GTNNAC	5 cut(s)	84, 166, 211, 231, 385
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	2 cut(s)	129, 293
Hpy8I	GTNNAC	5 cut(s)	84, 166, 211, 231, 385
HpyAV	CCTTC	2 cut(s)	106, 262
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	5 cut(s)	331, 341, 419, 471, 513
HpyF3I	CTNAG	2 cut(s)	171, 482
Hsp92II	CATG	1 cut(s)	335
Ksp22I	TGATCA	2 cut(s)	247, 295
KspAI	GTTAAC	1 cut(s)	385
Kzo9I	GATC	5 cut(s)	46, 247, 295, 430, 500
LmnI	GCTCC	2 cut(s)	262, 356
Lsp1109I	GCAGC	1 cut(s)	497
MaeI	CTAG	1 cut(s)	504
MaeIII	GTNAC	2 cut(s)	71, 190
MalI	GATC	5 cut(s)	48, 249, 297, 432, 502
MboI	GATC	5 cut(s)	46, 247, 295, 430, 500
MboII	GAAGA	3 cut(s)	41, 117, 190
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	1 cut(s)	457
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	1 cut(s)	294
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	2 cut(s)	110, 336
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	3 cut(s)	12, 261, 454
MvaI	CCWGG	2 cut(s)	12, 261
NciI	CCSGG	1 cut(s)	454
NdeII	GATC	5 cut(s)	46, 247, 295, 430, 500
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	2 cut(s)	9, 406
NmuCI	GTSAC	2 cut(s)	71, 190
OliI	CACNNNNGTG	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	512
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PpuMI	RGGWCCY	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	10, 259
PspGI	CCWGG	2 cut(s)	10, 259
PspN4I	GGNNCC	2 cut(s)	9, 406
PspPI	GGNCC	1 cut(s)	8
PspPPI	RGGWCCY	1 cut(s)	8
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	2 cut(s)	56, 427
RsaNI	GTAC	2 cut(s)	55, 426
RseI	CAYNNNNRTG	2 cut(s)	110, 336
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	1 cut(s)	511
Sau3AI	GATC	5 cut(s)	46, 247, 295, 430, 500
Sau96I	GGNCC	1 cut(s)	8
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	3 cut(s)	12, 261, 454
SinI	GGWCC	1 cut(s)	8
SmiMI	CAYNNNNRTG	2 cut(s)	110, 336
Sse9I	AATT	1 cut(s)	457
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	3 cut(s)	10, 259, 452
TaaI	ACNGT	1 cut(s)	244
TaqI	TCGA	2 cut(s)	441, 499
TasI	AATT	1 cut(s)	457
TatI	WGTACW	1 cut(s)	54
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	2 cut(s)	112, 361
TseFI	GTSAC	2 cut(s)	71, 190
TseI	GCWGC	1 cut(s)	510
Tsp45I	GTSAC	2 cut(s)	71, 190
TspRI	CASTG	2 cut(s)	112, 361
VpaK11BI	GGWCC	1 cut(s)	8
XapI	RAATTY	1 cut(s)	457
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.