Prupe.3G271800_v2.0.a1

Mitochondrial outer membrane protein porin of 34

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0003226
Physical Location & Seq
Forward (+)
25239322 .. 25242183
2862 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G271800.1

Sequence Viewer

Length: 828 bp
ATGGTCGGTCCTGGTCTTTACACTGACATCGGCAAAAAAGCCAGAGATCTTCTGTACAAGGATTACCAGAGCGACCATAAGTTCACCGTCACTACCTACTCTCCCACCGGAGTGGCTATCACATCCTCAGGAACAAAGAAAGGTGAGCTGTTTCTGGCTGATGTTAACACCCAGTTGAAGAACAAGAATGTCACAACTGATATCAAAGTTGACACAGACTCGAATCTTTCCACCACTGTTACGGTTGATCAACCTGCTCCTGGATTGAAGGCAATCTTTAGCTTCAAAGTTCCCGACCAGAGGTCTGGAAAGGTGGAACTCCAGTATTTGCATGACTATGCAGGGATAAGCACCAGCATTGGGTTGACAGCAAACCCTATTGTTAACTTTTCTGGTGTCATAGGAACTAATCAACTTGCACTTGGTACTGATCTGTCATTTGACACCAAGACAGGGAACTTGACTAAATGCAATGCTGGAGTGAGCTTCTCCAATGCAGACCTAATCGCTGCACTGACCCTGAATGATAAAGGTGACATCCTCAGTGCATCCTACTATCACAATGTCAATCCCCTTGCTAACACAGCTGTTGGTGCTGAGGTGACCCATAGATTTCCTACCAATGAGAATACCATCACTCTTGGCACCCAGCATGCCCTGGATCCATTGACGACTTTAAAGGCACGAGTGAACAATTTTGGCAAGGCAAGTGCCCTTATCCAGCATGAGTGGCGTCCAAAATCATTTGTCACTATTTCAGGAGAGGTAGACACCAAAGCCATTGAGAAGACCGCCAAGATCGGGTTGGCTCTTGCCCTCAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005773 GO:0005774 GO:0005886 GO:0006091 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008308 GO:0008509 GO:0009060 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010029 GO:0010033 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0015980 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031966 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032592 GO:0034220 GO:0042170 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045333 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051704 GO:0051707 GO:0055085 GO:0055114 GO:0065007 GO:0070013 GO:0071944 GO:0098542 GO:0098573 GO:0098588 GO:0098656 GO:0098805 GO:1900140 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166
Pfam Domains
Protein Families
Porin_3

Protein Analysis

276

Amino Acids

29.41

Weight (kDa)

8.46

Isoelectric Point (pI)

7.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 262
AccB1I GGYRCC 1 cut(s) 644
AccI GTMKAC 1 cut(s) 768
AciI CCGC 1 cut(s) 792
AclWI GGATC 2 cut(s) 656, 669
AcyI GRCGYC 1 cut(s) 733
AfaI GTAC 2 cut(s) 56, 427
AfiI CCNNNNNNNGG 5 cut(s) 260, 300, 360, 453, 801
AgsI TTSAA 3 cut(s) 178, 268, 286
AhdI GACNNNNNGTC 1 cut(s) 301
AjnI CCWGG 3 cut(s) 10, 259, 657
AleI CACNNNNGTG 1 cut(s) 110
AluBI AGCT 4 cut(s) 148, 282, 486, 587
AluI AGCT 4 cut(s) 148, 282, 486, 587
AlwI GGATC 2 cut(s) 656, 669
ApeKI GCWGC 1 cut(s) 509
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 4 cut(s) 76, 155, 545, 613
AvaII GGWCC 1 cut(s) 8
AxyI CCTNAGG 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 715
BamHI GGATCC 1 cut(s) 661
BanI GGYRCC 1 cut(s) 644
BauI CACGAG 1 cut(s) 684
BbsI GAAGAC 1 cut(s) 794
BbvCI CCTCAGC 1 cut(s) 597
BbvI GCAGC 1 cut(s) 496
BccI CCATC 1 cut(s) 641
BciT130I CCWGG 3 cut(s) 12, 261, 659
BclI TGATCA 1 cut(s) 247
BfuAI ACCTGC 1 cut(s) 262
BglII AGATCT 1 cut(s) 46
BisI GCNGC 1 cut(s) 510
BlsI GCNGC 1 cut(s) 511
Bme1390I CCNGG 3 cut(s) 12, 261, 659
Bme18I GGWCC 1 cut(s) 8
BmeRI GACNNNNNGTC 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 2 cut(s) 646, 663
BmrFI CCNGG 3 cut(s) 12, 261, 659
BmrI ACTGGG 1 cut(s) 166
BmsI GCATC 1 cut(s) 557
BmuI ACTGGG 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 794
BpmI CTGGAG 2 cut(s) 305, 498
Bpu10I CCTNAGC 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 803
BsaHI GRCGYC 1 cut(s) 733
BsaJI CCNNGG 1 cut(s) 657
BsaWI WCCGGW 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 5 cut(s) 260, 300, 360, 453, 801
Bse1I ACTGG 2 cut(s) 172, 322
Bse21I CCTNAGG 1 cut(s) 127
Bse3DI GCAATG 1 cut(s) 478
BseBI CCWGG 3 cut(s) 12, 261, 659
BseDI CCNNGG 1 cut(s) 657
BseGI GGATG 3 cut(s) 122, 537, 548
BseLI CCNNNNNNNGG 5 cut(s) 260, 300, 360, 453, 801
BseMI GCAATG 1 cut(s) 478
BseMII CTCAG 3 cut(s) 141, 556, 588
BseNI ACTGG 2 cut(s) 172, 322
BseSI GKGCMC 1 cut(s) 715
BseXI GCAGC 1 cut(s) 496
BseYI CCCAGC 1 cut(s) 648
BsgI GTGCAG 1 cut(s) 495
BshNI GGYRCC 1 cut(s) 644
BsiSI CCGG 1 cut(s) 108
BslI CCNNNNNNNGG 5 cut(s) 260, 300, 360, 453, 801
Bsp1286I GDGCHC 1 cut(s) 715
Bsp1407I TGTACA 1 cut(s) 54
Bsp143I GATC 5 cut(s) 46, 247, 430, 661, 798
BspACI CCGC 1 cut(s) 792
BspCNI CTCAG 3 cut(s) 140, 555, 589
BspLI GGNNCC 2 cut(s) 646, 663
BspMI ACCTGC 1 cut(s) 262
BspPI GGATC 2 cut(s) 656, 669
BspT107I GGYRCC 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 478
BsrGI TGTACA 1 cut(s) 54
BsrI ACTGG 2 cut(s) 172, 322
BssECI CCNNGG 1 cut(s) 657
BssMI GATC 5 cut(s) 46, 247, 430, 661, 798
BssNI GRCGYC 1 cut(s) 733
BssSI CACGAG 1 cut(s) 684
Bst2BI CACGAG 1 cut(s) 684
Bst2UI CCWGG 3 cut(s) 12, 261, 659
Bst4CI ACNGT 3 cut(s) 88, 238, 244
BstACI GRCGYC 1 cut(s) 733
BstAUI TGTACA 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 654
BstDEI CTNAG 3 cut(s) 127, 542, 597
BstEII GGTNACC 1 cut(s) 601
BstF5I GGATG 3 cut(s) 122, 537, 548
BstKTI GATC 5 cut(s) 49, 250, 433, 664, 801
BstMBI GATC 5 cut(s) 46, 247, 430, 661, 798
BstMWI GCNNNNNNNGC 3 cut(s) 584, 593, 730
BstNI CCWGG 3 cut(s) 12, 261, 659
BstNSI RCATGY 1 cut(s) 656
BstPI GGTNACC 1 cut(s) 601
BstSCI CCNGG 3 cut(s) 10, 259, 657
BstSLI GKGCMC 1 cut(s) 715
BstV1I GCAGC 1 cut(s) 496
BstV2I GAAGAC 1 cut(s) 794
BstX2I RGATCY 2 cut(s) 46, 661
BstXI CCANNNNNNTGG 2 cut(s) 112, 305
BstYI RGATCY 2 cut(s) 46, 661
Bsu36I CCTNAGG 1 cut(s) 127
BtsCI GGATG 3 cut(s) 122, 537, 548
BtsIMutI CAGTG 4 cut(s) 21, 234, 512, 550
BveI ACCTGC 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 654
Cfr13I GGNCC 1 cut(s) 8
CseI GACGC 1 cut(s) 722
Csp6I GTAC 2 cut(s) 55, 426
CviAII CATG 4 cut(s) 332, 653, 725, 825
CviQI GTAC 2 cut(s) 55, 426
DdeI CTNAG 3 cut(s) 127, 542, 597
DpnI GATC 5 cut(s) 48, 249, 432, 663, 800
DpnII GATC 5 cut(s) 46, 247, 430, 661, 798
DraI TTTAAA 1 cut(s) 678
DriI GACNNNNNGTC 1 cut(s) 301
Eam1105I GACNNNNNGTC 1 cut(s) 301
Eco32I GATATC 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 8
Eco81I CCTNAGG 1 cut(s) 127
Eco91I GGTNACC 1 cut(s) 601
EcoO65I GGTNACC 1 cut(s) 601
EcoRII CCWGG 3 cut(s) 10, 259, 657
EcoRV GATATC 1 cut(s) 202
FaeI CATG 4 cut(s) 335, 656, 728, 828
FaiI YATR 8 cut(s) 78, 333, 339, 401, 609, 654, 726, 826
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FatI CATG 4 cut(s) 331, 652, 724, 824
FbaI TGATCA 1 cut(s) 247
FblI GTMKAC 1 cut(s) 768
Fnu4HI GCNGC 1 cut(s) 510
FokI GGATG 3 cut(s) 109, 524, 535
Fsp4HI GCNGC 1 cut(s) 510
GluI GCNGC 1 cut(s) 510
GsaI CCCAGC 1 cut(s) 652
GsuI CTGGAG 2 cut(s) 305, 498
HapII CCGG 1 cut(s) 108
HgaI GACGC 1 cut(s) 722
Hin1I GRCGYC 1 cut(s) 733
Hin1II CATG 4 cut(s) 335, 656, 728, 828
HincII GTYRAC 4 cut(s) 166, 211, 366, 385
HindII GTYRAC 4 cut(s) 166, 211, 366, 385
HinfI GANTC 2 cut(s) 218, 223
HpaI GTTAAC 2 cut(s) 166, 385
HpaII CCGG 1 cut(s) 108
HphI GGTGA 4 cut(s) 76, 155, 545, 613
Hpy166II GTNNAC 7 cut(s) 84, 166, 211, 366, 385, 691, 769
Hpy188III TCNNGA 4 cut(s) 129, 293, 306, 759
Hpy8I GTNNAC 7 cut(s) 84, 166, 211, 366, 385, 691, 769
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 3 cut(s) 88, 238, 244
HpyCH4V TGCA 7 cut(s) 331, 341, 419, 471, 497, 512, 548
HpyF10VI GCNNNNNNNGC 3 cut(s) 584, 593, 730
HpyF3I CTNAG 3 cut(s) 127, 542, 597
Hsp92I GRCGYC 1 cut(s) 733
Hsp92II CATG 4 cut(s) 335, 656, 728, 828
Ksp22I TGATCA 1 cut(s) 247
KspAI GTTAAC 2 cut(s) 166, 385
Kzo9I GATC 5 cut(s) 46, 247, 430, 661, 798
LmnI GCTCC 1 cut(s) 262
Lsp1109I GCAGC 1 cut(s) 496
LweI GCATC 1 cut(s) 557
MaeIII GTNAC 6 cut(s) 88, 190, 238, 533, 601, 748
MalI GATC 5 cut(s) 48, 249, 432, 663, 800
MboI GATC 5 cut(s) 46, 247, 430, 661, 798
MboII GAAGA 3 cut(s) 41, 190, 799
MflI RGATCY 2 cut(s) 46, 661
MhlI GDGCHC 1 cut(s) 715
MluCI AATT 1 cut(s) 694
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 6 cut(s) 136, 294, 551, 592, 757, 827
MseI TTAA 3 cut(s) 165, 384, 677
MslI CAYNNNNRTG 2 cut(s) 110, 336
MspA1I CMGCKG 1 cut(s) 587
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 3 cut(s) 12, 261, 659
MvaI CCWGG 3 cut(s) 12, 261, 659
MwoI GCNNNNNNNGC 3 cut(s) 584, 593, 730
NdeII GATC 5 cut(s) 46, 247, 430, 661, 798
NlaIII CATG 4 cut(s) 335, 656, 728, 828
NlaIV GGNNCC 2 cut(s) 646, 663
NmuCI GTSAC 5 cut(s) 88, 190, 533, 601, 748
NspI RCATGY 1 cut(s) 656
OliI CACNNNNGTG 1 cut(s) 110
PaeI GCATGC 1 cut(s) 656
PfeI GAWTC 1 cut(s) 223
PfoI TCCNGGA 1 cut(s) 259
PkrI GCNGC 1 cut(s) 511
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
Psp6I CCWGG 3 cut(s) 10, 259, 657
PspEI GGTNACC 1 cut(s) 601
PspFI CCCAGC 1 cut(s) 648
PspGI CCWGG 3 cut(s) 10, 259, 657
PspN4I GGNNCC 2 cut(s) 646, 663
PspPI GGNCC 1 cut(s) 8
PsuI RGATCY 2 cut(s) 46, 661
PvuII CAGCTG 1 cut(s) 587
RsaI GTAC 2 cut(s) 56, 427
RsaNI GTAC 2 cut(s) 55, 426
RseI CAYNNNNRTG 2 cut(s) 110, 336
SaqAI TTAA 3 cut(s) 165, 384, 677
SatI GCNGC 1 cut(s) 510
Sau3AI GATC 5 cut(s) 46, 247, 430, 661, 798
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 3 cut(s) 12, 261, 659
SduI GDGCHC 1 cut(s) 715
SfaNI GCATC 1 cut(s) 557
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 2 cut(s) 110, 336
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
SphI GCATGC 1 cut(s) 656
Sse9I AATT 1 cut(s) 694
SsiI CCGC 1 cut(s) 792
StyD4I CCNGG 3 cut(s) 10, 259, 657
TaaI ACNGT 3 cut(s) 88, 238, 244
TaqI TCGA 1 cut(s) 221
TasI AATT 1 cut(s) 694
TatI WGTACW 1 cut(s) 54
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 3 cut(s) 165, 384, 677
Tru9I TTAA 3 cut(s) 165, 384, 677
TscAI CASTG 4 cut(s) 28, 241, 519, 550
TseFI GTSAC 5 cut(s) 88, 190, 533, 601, 748
TseI GCWGC 1 cut(s) 509
Tsp45I GTSAC 5 cut(s) 88, 190, 533, 601, 748
TspRI CASTG 4 cut(s) 28, 241, 519, 550
VpaK11BI GGWCC 1 cut(s) 8
XceI RCATGY 1 cut(s) 656
XcmI CCANNNNNNNNNTGG 1 cut(s) 802
XmiI GTMKAC 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.