Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003226

Physical Location & Seq

Genomic Coordinates Reverse (-)

60229000 .. 60231331

Gene Structure 2332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG385100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGTGAAGGGTCCGGGTCTCTACTCAGATATCGGCAAGAAAGCCAGAGATCTTCTTTACAGGGATTACCAGACCGACCACAAGTTCACCGTCACCACGTACACTTCTGCCGGAGTAGCAATCACTTCGAGTGGAATTAAGAAAGGTGATCTTCTTTTGGGGGATGTGAGCACTCAGCTGAAGAACAAGAACATCACAACTGATGTTAAAGTTGATACCAATTCGAACCTTCTCACAACCATTACTATTGACGAACCCGCACCTGGTCTCAAAGCAATCTTTAGCTTCATTGTACCTGATCAAAAATCTGGAAAGGTGGAACTTCAATACCAGCATGAGTATGCTGGAATAAGTACTAGCCTTGGATTGACTGCCAACCCTGTTATTAACTTTTCTGGTGTTGTTGGGAACACTGCTCTCTCTCTTGGAACAGATGTTTCCTTTGACACTGCCTCTGGGAACTTGACCAAACTCAATGCTGGGTTGAATTTCATCCATACTGACCTCATTGCCTCCCTGCTTGTGAATGACAAGGGTGATACTCTCACAGCTTCCTATTACCAGACTGTTAGCCCCCTTACTAACACTGCCGTTGGTGCTGAGATGTCCCATAGCTTTTCTAGCAATGAGAACACTTTCACAATCGGCACTCAGCATGCACTTGACCCCTTAACCTCAGTGAAGGCTCGGGTGAACAACTACGGCAGGGCAAGCGCTCTTATCCAGCATGAGTGGCGTCCCAAGTCCTTGTTCACTATCTCAGGAGAGGTTGACACGAGGGCAATTGAGAAGAGTGCAAAGATCGGTTTGGCTTTGGCACTCAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009526 GO:0009527 GO:0009536 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0034220 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098656 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

276

Amino Acids

29.49

Weight (kDa)

7.02

Isoelectric Point (pI)

9.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	4 - 269	1.3e-88	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01280 AT5G15090 AT5G15090
fragaria_vesca	FvH4_4g16150 FvH4_4g31911 FvH4_6g49250
malus_domestica	MD09G1047200.v1.1 MD13G1078700.v1.1 MD16G1078300.v1.1 MD17G1047400.v1.1
prunus_persica	Prupe.1G268200_v2.0.a1 Prupe.3G271800_v2.0.a1
pyrus_communis	pycom111g03800 pycom13g06830 pycom16g06780 pycom17g04220
rosa_chinensis	RchiOBHm_Chr2g0169111 RchiOBHm_Chr4g0440571
rosa_laevigata	RLG00000006167 RLG00000021835
rosa_multiflora	Rmu_sc0011312.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082430 Rroxscaffold_5G00381400
rosa_rugosa	Rorug02G0537000 Rorug04G0326700
rosa_samantha	Rh2AG608900 Rh2BG621800 Rh2CG590500 Rh2DG632400 Rh4AG378500 Rh4AG378600 Rh4BG391200 Rh4CG405900 Rh4DG385100
rosa_wichuraiana	Rw2G050490 Rw4G032410 Rw4G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	487
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	736
AfaI	GTAC	3 cut(s)	101, 294, 355
AfeI	AGCGCT	1 cut(s)	715
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	326, 487
AjnI	CCWGG	1 cut(s)	262
AjuI	GAANNNNNNNTTGG	2 cut(s)	734, 766
AluBI	AGCT	4 cut(s)	178, 285, 551, 615
AluI	AGCT	4 cut(s)	178, 285, 551, 615
Alw21I	GWGCWC	1 cut(s)	173
Alw26I	GTCTC	2 cut(s)	23, 272
Ama87I	CYCGRG	1 cut(s)	687
Aor51HI	AGCGCT	1 cut(s)	715
ApoI	RAATTY	1 cut(s)	487
Asp700I	GAANNNNTTC	1 cut(s)	635
AspLEI	GCGC	1 cut(s)	716
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	15
AsuHPI	GGTGA	6 cut(s)	16, 79, 85, 158, 548, 703
AsuII	TTCGAA	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	687
AvaII	GGWCC	1 cut(s)	11
BauI	CACGAG	1 cut(s)	775
Bbv12I	GWGCWC	1 cut(s)	173
BceAI	ACGGC	2 cut(s)	575, 718
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BciT130I	CCWGG	1 cut(s)	264
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	15
BcoDI	GTCTC	2 cut(s)	23, 272
BfaI	CTAG	2 cut(s)	357, 621
BfoI	RGCGCY	1 cut(s)	717
BglII	AGATCT	1 cut(s)	49
BmcAI	AGTACT	1 cut(s)	355
Bme1390I	CCNGG	2 cut(s)	15, 264
Bme18I	GGWCC	1 cut(s)	11
BmeT110I	CYCGRG	1 cut(s)	687
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	2 cut(s)	15, 264
Bpu14I	TTCGAA	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	806
BpuMI	CCSGG	1 cut(s)	15
BsaAI	YACGTR	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	736
BsaI	GGTCTC	2 cut(s)	23, 272
BsaJI	CCNNGG	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse3DI	GCAATG	2 cut(s)	507, 631
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	2 cut(s)	169, 492
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	2 cut(s)	507, 631
BseMII	CTCAG	6 cut(s)	39, 188, 591, 665, 690, 774
BseYI	CCCAGC	1 cut(s)	479
BsiHKAI	GWGCWC	1 cut(s)	173
BsiHKCI	CYCGRG	1 cut(s)	687
BsiSI	CCGG	2 cut(s)	14, 111
BslFI	GGGAC	2 cut(s)	592, 723
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	2 cut(s)	23, 272
BsmFI	GGGAC	2 cut(s)	592, 723
Bso31I	GGTCTC	2 cut(s)	23, 272
BsoBI	CYCGRG	1 cut(s)	687
Bsp119I	TTCGAA	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	4 cut(s)	49, 148, 298, 801
BspACI	CCGC	1 cut(s)	258
BspCNI	CTCAG	6 cut(s)	38, 187, 592, 664, 689, 773
BspLI	GGNNCC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	224
BspTNI	GGTCTC	2 cut(s)	23, 272
BsrDI	GCAATG	2 cut(s)	507, 631
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	4 cut(s)	49, 148, 298, 801
BssNI	GRCGYC	1 cut(s)	736
BssSI	CACGAG	1 cut(s)	775
BssT1I	CCWWGG	1 cut(s)	361
Bst2BI	CACGAG	1 cut(s)	775
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	91, 568
Bst6I	CTCTTC	1 cut(s)	785
BstACI	GRCGYC	1 cut(s)	736
BstBAI	YACGTR	1 cut(s)	99
BstBI	TTCGAA	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	657, 712
BstDEI	CTNAG	6 cut(s)	25, 174, 600, 651, 676, 760
BstF5I	GGATG	2 cut(s)	169, 492
BstH2I	RGCGCY	1 cut(s)	717
BstHHI	GCGC	1 cut(s)	716
BstKTI	GATC	4 cut(s)	52, 151, 301, 804
BstMAI	GTCTC	2 cut(s)	23, 272
BstMBI	GATC	4 cut(s)	49, 148, 298, 801
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 596, 621, 711, 733
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	659
BstSCI	CCNGG	2 cut(s)	13, 262
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	169, 492
BtsI	GCAGTG	3 cut(s)	411, 447, 585
BtsIMutI	CAGTG	4 cut(s)	411, 447, 585, 684
Cac8I	GCNNGC	2 cut(s)	657, 712
CfoI	GCGC	1 cut(s)	716
Cfr13I	GGNCC	1 cut(s)	11
CseI	GACGC	1 cut(s)	725
CsiI	ACCWGGT	1 cut(s)	262
Csp6I	GTAC	3 cut(s)	100, 293, 354
CviAII	CATG	4 cut(s)	335, 656, 728, 828
CviQI	GTAC	3 cut(s)	100, 293, 354
DdeI	CTNAG	6 cut(s)	25, 174, 600, 651, 676, 760
DpnI	GATC	4 cut(s)	51, 150, 300, 803
DpnII	GATC	4 cut(s)	49, 148, 298, 801
Eam1104I	CTCTTC	1 cut(s)	785
EarI	CTCTTC	1 cut(s)	785
Eco130I	CCWWGG	1 cut(s)	361
Eco31I	GGTCTC	2 cut(s)	23, 272
Eco32I	GATATC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	11
Eco47III	AGCGCT	1 cut(s)	715
Eco57I	CTGAAG	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	687
EcoRII	CCWGG	1 cut(s)	262
EcoRV	GATATC	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	4 cut(s)	338, 659, 731, 831
FaiI	YATR	7 cut(s)	336, 342, 498, 612, 657, 729, 829
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FaqI	GGGAC	2 cut(s)	592, 723
FatI	CATG	4 cut(s)	334, 655, 727, 827
FauI	CCCGC	1 cut(s)	265
FbaI	TGATCA	1 cut(s)	298
FokI	GGATG	2 cut(s)	176, 479
FspBI	CTAG	2 cut(s)	357, 621
GlaI	GCGC	1 cut(s)	715
GsaI	CCCAGC	1 cut(s)	483
HaeII	RGCGCY	1 cut(s)	717
HapII	CCGG	2 cut(s)	14, 111
HgaI	GACGC	1 cut(s)	725
HhaI	GCGC	1 cut(s)	716
Hin1I	GRCGYC	1 cut(s)	736
Hin1II	CATG	4 cut(s)	338, 659, 731, 831
Hin6I	GCGC	1 cut(s)	714
HinP1I	GCGC	1 cut(s)	714
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HpaII	CCGG	2 cut(s)	14, 111
HphI	GGTGA	6 cut(s)	16, 79, 85, 158, 548, 703
Hpy166II	GTNNAC	5 cut(s)	87, 102, 694, 753, 772
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	2 cut(s)	309, 762
Hpy8I	GTNNAC	5 cut(s)	87, 102, 694, 753, 772
HpyAV	CCTTC	2 cut(s)	239, 676
HpyCH4III	ACNGT	2 cut(s)	91, 568
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	2 cut(s)	659, 797
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 596, 621, 711, 733
HpyF3I	CTNAG	6 cut(s)	25, 174, 600, 651, 676, 760
HpySE526I	ACGT	1 cut(s)	98
Hsp92I	GRCGYC	1 cut(s)	736
Hsp92II	CATG	4 cut(s)	338, 659, 731, 831
HspAI	GCGC	1 cut(s)	714
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	49, 148, 298, 801
MabI	ACCWGGT	1 cut(s)	262
MaeI	CTAG	2 cut(s)	357, 621
MaeII	ACGT	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	4 cut(s)	51, 150, 300, 803
MboI	GATC	4 cut(s)	49, 148, 298, 801
MboII	GAAGA	4 cut(s)	44, 143, 193, 802
MfeI	CAATTG	1 cut(s)	783
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	4 cut(s)	135, 220, 487, 783
MnlI	CCTC	6 cut(s)	463, 515, 523, 685, 760, 771
MroXI	GAANNNNTTC	1 cut(s)	635
MseI	TTAA	4 cut(s)	138, 207, 387, 671
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	178
MspI	CCGG	2 cut(s)	14, 111
MspR9I	CCNGG	2 cut(s)	15, 264
MunI	CAATTG	1 cut(s)	783
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	5 cut(s)	116, 596, 621, 711, 733
NciI	CCSGG	1 cut(s)	15
NdeII	GATC	4 cut(s)	49, 148, 298, 801
NlaIII	CATG	4 cut(s)	338, 659, 731, 831
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	91
NspI	RCATGY	1 cut(s)	659
NspV	TTCGAA	1 cut(s)	224
PaeI	GCATGC	1 cut(s)	659
PdmI	GAANNNNTTC	1 cut(s)	635
Ppu21I	YACGTR	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	3 cut(s)	101, 294, 355
RsaNI	GTAC	3 cut(s)	100, 293, 354
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	4 cut(s)	138, 207, 387, 671
Sau3AI	GATC	4 cut(s)	49, 148, 298, 801
Sau96I	GGNCC	1 cut(s)	11
ScaI	AGTACT	1 cut(s)	355
ScrFI	CCNGG	2 cut(s)	15, 264
SduI	GDGCHC	1 cut(s)	173
SexAI	ACCWGGT	1 cut(s)	262
SfuI	TTCGAA	1 cut(s)	224
SinI	GGWCC	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
SphI	GCATGC	1 cut(s)	659
Sse9I	AATT	4 cut(s)	135, 220, 487, 783
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	2 cut(s)	357, 621
StyD4I	CCNGG	2 cut(s)	13, 262
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	2 cut(s)	91, 568
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	2 cut(s)	128, 224
TaqII	GACCGA	1 cut(s)	89
TasI	AATT	4 cut(s)	135, 220, 487, 783
TatI	WGTACW	1 cut(s)	353
Tru1I	TTAA	4 cut(s)	138, 207, 387, 671
Tru9I	TTAA	4 cut(s)	138, 207, 387, 671
TscAI	CASTG	4 cut(s)	418, 454, 592, 684
TseFI	GTSAC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	2 cut(s)	277, 481
TspRI	CASTG	4 cut(s)	418, 454, 592, 684
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	1 cut(s)	487
XceI	RCATGY	1 cut(s)	659
XmnI	GAANNNNTTC	1 cut(s)	635
XspI	CTAG	2 cut(s)	357, 621
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.