Rorug02G0537000

Mitochondrial outer membrane protein porin of 34

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003226
Physical Location & Seq
Forward (+)
66660296 .. 66661633
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0537000.1

Sequence Viewer

Length: 1338 bp
ATGACTTATGGGGCCACAAAGGTTGAGACTCGCCATCCTATCAGGCTGTACTCTCGATACATAGACAGGGTGCATATCTTGTTCCGCTTCACTCAGGAGGAGGCTCGGGACCTCATACAGCGATATCTTACCGAGCATCCAGATCCCAATAATGAAAATATGGTTGGATATAATAATAAGAAGTGCTGGGCAAGAGATGCAAGGATGAGGCTCCTGAAACATGATGTCAATCTTGGAAGGAGTGTCTTTTGGAATGTCAAGAACCGTCTCCCTCGAAGCATCACAACTTTGGAATGGGAGGACAGCTTTGTTTCTGTTTACAGCAAGGATAATCCAAATTTGCTTTTCAGCATGTGTGGATTTGAAGTAAGAATACTTCCCAAGATAAGAATGAGTACGAAGGAACACCAAACAGATGGAGTTTGGAACTTGCAAAATGAACAGACAAAGGAAAGGACTGTTGTTGCTTTTTTACGTTTTGAGGATGAATACATGAAGGCGTTTGAGAATCGTGTAAGGCAGATCCTTATGTCCTCAGGGTCTACAACATTCACAAAAGTTATCAACAAATGGAATACAGCCCTTATTGGTCTTATGACTTACTTCCGTGAAGCAGTTGTACATACAGCGGAGCTGTTAGATTTACTGGTCAAATGTGAAAATAAAATTCAGACCCGCATTAAGATTGGATTGAATTCAAAGATGCCAAGCAGGTTCCCACCTGTCATTTTTTACACGCCAAAAGAAATTGGAGGACTTGGCATGTTATCTATGGGTCACATATTGATTCCACAGAGTGACCTCAGATACTCTCGGCAGACAGAAATTGGTGTGACACACTTTAGGAGTGGAATGAGTCATGAAGAAGAGCAGCTGATTCCAAATCTTTACCGTTACATACAACCATGGGAGAGTGAGTTTATTGATTCACAGCGTGTTTGGGCAGAATATGCACTAAAAAGAGAGGAAGCTATGGAACAGAATCGGCGTCTTACCCTTGAAGATTTGGAAGATTCATGGGATAGGGGAATACCACGCATAAATACATTGTTCCAGAAGGATCGACACACTTTAGCATATGACAAAGGGTGGAGAGCTCGCACAGATTTTAAGCAGTACCAGATCTTGAAGCAAAATCCTTTCTGGTGGACACACCAAAGGCATGATGGAAAATTGTGGAATTTGAATAATTATAGAACTGATGTGATCCAAGCTCTTGGAGGAGTTGAGGGAATACTTGAGCACACCTTATTCAAAGGAACATACTTCCCTACTTGGGAGGGTCTCTTCTGGGAGAAGGCATCTGGATTTGAGGAATCGATGAAGTATAAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005773 GO:0005774 GO:0005886 GO:0006091 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008308 GO:0008509 GO:0009060 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010029 GO:0010033 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0015980 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031966 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032592 GO:0034220 GO:0042170 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045333 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051704 GO:0051707 GO:0055085 GO:0055114 GO:0065007 GO:0070013 GO:0071944 GO:0098542 GO:0098573 GO:0098588 GO:0098656 GO:0098805 GO:1900140 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166
Pfam Domains
Protein Families
Porin_3

Protein Analysis

445

Amino Acids

52.98

Weight (kDa)

9.12

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U5_2-snRNA_bdg PF10597 165 - 300 8.5e-76 U5-snRNA binding site 2 of PrP8
U6-snRNA_bdg PF10596 370 - 444 2.4e-30 U6-snRNA interacting domain of PrP8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 702
AccI GTMKAC 1 cut(s) 542
AciI CCGC 3 cut(s) 85, 629, 676
AclWI GGATC 4 cut(s) 137, 517, 1068, 1201
AcsI RAATTY 4 cut(s) 337, 666, 694, 1180
AcyI GRCGYC 1 cut(s) 988
AdeI CACNNNGTG 2 cut(s) 797, 935
AfaI GTAC 4 cut(s) 50, 397, 621, 1118
AfiI CCNNNNNNNGG 1 cut(s) 1276
AgsI TTSAA 7 cut(s) 365, 694, 699, 1001, 1129, 1186, 1255
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AluBI AGCT 6 cut(s) 306, 634, 874, 971, 1097, 1214
AluI AGCT 6 cut(s) 306, 634, 874, 971, 1097, 1214
Alw21I GWGCWC 2 cut(s) 1099, 1245
Alw26I GTCTC 3 cut(s) 20, 272, 1289
AlwI GGATC 4 cut(s) 137, 517, 1068, 1201
Ama87I CYCGRG 1 cut(s) 105
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 871
ApoI RAATTY 4 cut(s) 337, 666, 694, 1180
AspS9I GGNCC 2 cut(s) 12, 109
AvaI CYCGRG 1 cut(s) 105
AvaII GGWCC 1 cut(s) 109
AxyI CCTNAGG 1 cut(s) 535
BanII GRGCYC 1 cut(s) 1099
BarI GAAGNNNNNNTAC 6 cut(s) 357, 360, 389, 392, 603, 635
Bbv12I GWGCWC 2 cut(s) 1099, 1245
BbvI GCAGC 1 cut(s) 883
BccI CCATC 3 cut(s) 42, 410, 1160
BcoDI GTCTC 3 cut(s) 20, 272, 1289
BfuAI ACCTGC 1 cut(s) 702
BglII AGATCT 1 cut(s) 1122
BisI GCNGC 1 cut(s) 872
BlsI GCNGC 1 cut(s) 873
Bme18I GGWCC 1 cut(s) 109
BmeT110I CYCGRG 1 cut(s) 105
BmgT120I GGNCC 2 cut(s) 12, 109
BmiI GGNNCC 4 cut(s) 13, 110, 212, 716
BmsI GCATC 5 cut(s) 145, 187, 288, 693, 1310
BpuEI CTTGAG 1 cut(s) 1259
Bsa29I ATCGAT 1 cut(s) 1319
BsaBI GATNNNNATC 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 988
BsaI GGTCTC 1 cut(s) 1289
BsaJI CCNNGG 1 cut(s) 905
BsaXI ACNNNNNCTCC 2 cut(s) 902, 932
Bsc4I CCNNNNNNNGG 1 cut(s) 1276
Bse1I ACTGG 1 cut(s) 651
Bse21I CCTNAGG 1 cut(s) 535
Bse8I GATNNNNATC 1 cut(s) 228
BseCI ATCGAT 1 cut(s) 1319
BseDI CCNNGG 1 cut(s) 905
BseGI GGATG 4 cut(s) 34, 136, 210, 490
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 1276
BseMII CTCAG 3 cut(s) 107, 549, 817
BseNI ACTGG 1 cut(s) 651
BseRI GAGGAG 2 cut(s) 113, 1236
BseXI GCAGC 1 cut(s) 883
BseYI CCCAGC 1 cut(s) 186
BshFI GGCC 1 cut(s) 14
BshVI ATCGAT 1 cut(s) 1319
BsiHKAI GWGCWC 2 cut(s) 1099, 1245
BsiHKCI CYCGRG 1 cut(s) 105
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 1276
BsmAI GTCTC 3 cut(s) 20, 272, 1289
BsmBI CGTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 1 cut(s) 14
Bso31I GGTCTC 1 cut(s) 1289
BsoBI CYCGRG 1 cut(s) 105
Bsp1286I GDGCHC 2 cut(s) 1099, 1245
Bsp1407I TGTACA 1 cut(s) 619
Bsp143I GATC 5 cut(s) 142, 522, 1060, 1122, 1206
Bsp19I CCATGG 1 cut(s) 905
BspACI CCGC 3 cut(s) 85, 629, 676
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 3 cut(s) 106, 548, 816
BspDI ATCGAT 1 cut(s) 1319
BspHI TCATGA 1 cut(s) 859
BspLI GGNNCC 4 cut(s) 13, 110, 212, 716
BspMI ACCTGC 1 cut(s) 702
BspPI GGATC 4 cut(s) 137, 517, 1068, 1201
BspQI GCTCTTC 1 cut(s) 861
BspTNI GGTCTC 1 cut(s) 1289
BsrGI TGTACA 1 cut(s) 619
BsrI ACTGG 1 cut(s) 651
BssECI CCNNGG 1 cut(s) 905
BssMI GATC 5 cut(s) 142, 522, 1060, 1122, 1206
BssNI GRCGYC 1 cut(s) 988
BssT1I CCWWGG 1 cut(s) 905
Bst4CI ACNGT 3 cut(s) 266, 460, 893
Bst6I CTCTTC 2 cut(s) 861, 1292
BstACI GRCGYC 1 cut(s) 988
BstAPI GCANNNNNTGC 2 cut(s) 197, 950
BstAUI TGTACA 1 cut(s) 619
BstC8I GCNNGC 1 cut(s) 1099
BstDEI CTNAG 3 cut(s) 93, 535, 803
BstDSI CCRYGG 1 cut(s) 905
BstF5I GGATG 4 cut(s) 34, 136, 210, 490
BstKTI GATC 5 cut(s) 145, 525, 1063, 1125, 1209
BstMAI GTCTC 3 cut(s) 20, 272, 1289
BstMBI GATC 5 cut(s) 142, 522, 1060, 1122, 1206
BstMWI GCNNNNNNNGC 2 cut(s) 197, 950
BstNSI RCATGY 2 cut(s) 355, 766
BstV1I GCAGC 1 cut(s) 883
BstX2I RGATCY 3 cut(s) 142, 522, 1122
BstXI CCANNNNNNTGG 2 cut(s) 416, 1217
BstYI RGATCY 3 cut(s) 142, 522, 1122
Bsu15I ATCGAT 1 cut(s) 1319
Bsu36I CCTNAGG 1 cut(s) 535
BsuRI GGCC 1 cut(s) 14
BsuTUI ATCGAT 1 cut(s) 1319
BtgI CCRYGG 1 cut(s) 905
BtsCI GGATG 4 cut(s) 34, 136, 210, 490
BveI ACCTGC 1 cut(s) 702
Cac8I GCNNGC 1 cut(s) 1099
CciI TCATGA 1 cut(s) 859
Cfr13I GGNCC 2 cut(s) 12, 109
ClaI ATCGAT 1 cut(s) 1319
CseI GACGC 1 cut(s) 977
Csp6I GTAC 4 cut(s) 49, 396, 620, 1117
CspCI CAANNNNNGTGG 2 cut(s) 4, 39
CviAII CATG 8 cut(s) 221, 352, 493, 763, 860, 906, 1017, 1163
CviQI GTAC 4 cut(s) 49, 396, 620, 1117
DdeI CTNAG 3 cut(s) 93, 535, 803
DpnI GATC 5 cut(s) 144, 524, 1062, 1124, 1208
DpnII GATC 5 cut(s) 142, 522, 1060, 1122, 1206
DraIII CACNNNGTG 2 cut(s) 797, 935
Eam1104I CTCTTC 2 cut(s) 861, 1292
EarI CTCTTC 2 cut(s) 861, 1292
Ecl136II GAGCTC 1 cut(s) 1097
Eco130I CCWWGG 1 cut(s) 905
Eco24I GRGCYC 1 cut(s) 1099
Eco31I GGTCTC 1 cut(s) 1289
Eco32I GATATC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 1097
Eco81I CCTNAGG 1 cut(s) 535
Eco88I CYCGRG 1 cut(s) 105
EcoICRI GAGCTC 1 cut(s) 1097
EcoO109I RGGNCCY 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 694
EcoRV GATATC 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 905
EcoT38I GRGCYC 1 cut(s) 1099
ErhI CCWWGG 1 cut(s) 905
Esp3I CGTCTC 1 cut(s) 272
FaeI CATG 8 cut(s) 224, 355, 496, 766, 863, 909, 1020, 1166
FaqI GGGAC 1 cut(s) 122
FatI CATG 8 cut(s) 220, 351, 492, 762, 859, 905, 1016, 1162
FauI CCCGC 1 cut(s) 683
FauNDI CATATG 1 cut(s) 1078
FblI GTMKAC 1 cut(s) 542
Fnu4HI GCNGC 1 cut(s) 872
FokI GGATG 4 cut(s) 21, 123, 217, 497
FriOI GRGCYC 1 cut(s) 1099
Fsp4HI GCNGC 1 cut(s) 872
GluI GCNGC 1 cut(s) 872
GsaI CCCAGC 1 cut(s) 190
HaeIII GGCC 1 cut(s) 14
HgaI GACGC 1 cut(s) 977
Hin1I GRCGYC 1 cut(s) 988
Hin1II CATG 8 cut(s) 224, 355, 496, 766, 863, 909, 1020, 1166
HinfI GANTC 9 cut(s) 28, 508, 787, 856, 877, 926, 982, 1013, 1316
Hpy166II GTNNAC 3 cut(s) 319, 543, 1149
Hpy188I TCNGA 2 cut(s) 672, 806
Hpy8I GTNNAC 3 cut(s) 319, 543, 1149
HpyAV CCTTC 5 cut(s) 231, 394, 490, 1051, 1291
HpyCH4III ACNGT 3 cut(s) 266, 460, 893
HpyCH4IV ACGT 1 cut(s) 475
HpyCH4V TGCA 4 cut(s) 73, 200, 433, 953
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 950
HpyF3I CTNAG 3 cut(s) 93, 535, 803
HpySE526I ACGT 1 cut(s) 475
Hsp92I GRCGYC 1 cut(s) 988
Hsp92II CATG 8 cut(s) 224, 355, 496, 766, 863, 909, 1020, 1166
Kzo9I GATC 5 cut(s) 142, 522, 1060, 1122, 1206
LguI GCTCTTC 1 cut(s) 861
LmnI GCTCC 2 cut(s) 216, 631
Lsp1109I GCAGC 1 cut(s) 883
LweI GCATC 5 cut(s) 145, 187, 288, 693, 1310
MaeII ACGT 1 cut(s) 475
MaeIII GTNAC 4 cut(s) 776, 797, 832, 893
MalI GATC 5 cut(s) 144, 524, 1062, 1124, 1208
MboI GATC 5 cut(s) 142, 522, 1060, 1122, 1206
MboII GAAGA 5 cut(s) 875, 878, 1013, 1022, 1279
MflI RGATCY 3 cut(s) 142, 522, 1122
MhlI GDGCHC 2 cut(s) 1099, 1245
MluCI AATT 8 cut(s) 337, 666, 694, 747, 825, 1172, 1180, 1189
MlyI GAGTC 2 cut(s) 22, 865
MmeI TCCRAC 1 cut(s) 145
MseI TTAA 2 cut(s) 681, 1110
MspA1I CMGCKG 2 cut(s) 629, 874
MwoI GCNNNNNNNGC 2 cut(s) 197, 950
NcoI CCATGG 1 cut(s) 905
NdeI CATATG 1 cut(s) 1078
NdeII GATC 5 cut(s) 142, 522, 1060, 1122, 1206
NlaIII CATG 8 cut(s) 224, 355, 496, 766, 863, 909, 1020, 1166
NlaIV GGNNCC 4 cut(s) 13, 110, 212, 716
NmeAIII GCCGAG 1 cut(s) 793
NmuCI GTSAC 3 cut(s) 776, 797, 832
NspI RCATGY 2 cut(s) 355, 766
PagI TCATGA 1 cut(s) 859
PciSI GCTCTTC 1 cut(s) 861
PfeI GAWTC 7 cut(s) 508, 787, 877, 926, 982, 1013, 1316
PkrI GCNGC 1 cut(s) 873
PleI GAGTC 2 cut(s) 22, 864
PpsI GAGTC 2 cut(s) 22, 864
PpuMI RGGWCCY 1 cut(s) 109
Psp124BI GAGCTC 1 cut(s) 1099
Psp5II RGGWCCY 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 186
PspN4I GGNNCC 4 cut(s) 13, 110, 212, 716
PspPI GGNCC 2 cut(s) 12, 109
PspPPI RGGWCCY 1 cut(s) 109
PsuI RGATCY 3 cut(s) 142, 522, 1122
PvuII CAGCTG 1 cut(s) 874
RsaI GTAC 4 cut(s) 50, 397, 621, 1118
RsaNI GTAC 4 cut(s) 49, 396, 620, 1117
SacI GAGCTC 1 cut(s) 1099
SapI GCTCTTC 1 cut(s) 861
SaqAI TTAA 2 cut(s) 681, 1110
SatI GCNGC 1 cut(s) 872
Sau3AI GATC 5 cut(s) 142, 522, 1060, 1122, 1206
Sau96I GGNCC 2 cut(s) 12, 109
SchI GAGTC 2 cut(s) 22, 865
SduI GDGCHC 2 cut(s) 1099, 1245
SfaNI GCATC 5 cut(s) 145, 187, 288, 693, 1310
SinI GGWCC 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 1238
SmoI CTYRAG 1 cut(s) 1238
Sse9I AATT 8 cut(s) 337, 666, 694, 747, 825, 1172, 1180, 1189
SsiI CCGC 3 cut(s) 85, 629, 676
SstI GAGCTC 1 cut(s) 1099
StyI CCWWGG 1 cut(s) 905
TaaI ACNGT 3 cut(s) 266, 460, 893
TaiI ACGT 1 cut(s) 478
TaqI TCGA 4 cut(s) 55, 274, 1063, 1319
TasI AATT 8 cut(s) 337, 666, 694, 747, 825, 1172, 1180, 1189
TatI WGTACW 2 cut(s) 48, 619
TfiI GAWTC 7 cut(s) 508, 787, 877, 926, 982, 1013, 1316
Tru1I TTAA 2 cut(s) 681, 1110
Tru9I TTAA 2 cut(s) 681, 1110
TseFI GTSAC 3 cut(s) 776, 797, 832
TseI GCWGC 1 cut(s) 871
Tsp45I GTSAC 3 cut(s) 776, 797, 832
TspDTI ATGAA 7 cut(s) 168, 453, 501, 509, 876, 1005, 1337
TspGWI ACGGA 1 cut(s) 596
VpaK11BI GGWCC 1 cut(s) 109
XapI RAATTY 4 cut(s) 337, 666, 694, 1180
XceI RCATGY 2 cut(s) 355, 766
XcmI CCANNNNNNNNNTGG 1 cut(s) 1163
XmiI GTMKAC 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.