Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011312.1

Orthogroup ID

OG0003226

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1740

Gene Structure 1740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011312.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

gcaatcacttcgagtggaattaagaaaggtgatcttcttttgggggatgtgagcactcagctgaagaacaagaacatcacaactgatgttaaagttgataccaattcaaaccttctcacaaccattactattgacgaacccgcacctggtctcaaggcaatctttagcttcattgtacctgatcaaaaatctggaaaggtggaacttcaataccagcatgagtatgctggaataagtactagccttggattgactgccaaccctgttattaacttttctggtgttgttgggaacactgctctctctcttggaacagatgtttcctttgacactgcctctgggaacttgaccaaactcaatgctgggttgaatttcatccatactgacctcattgcctccctgcttgtgaatgacaagggtgatactctcacagcttcctattaccagactgttagcccccttactaacactgccgttggtgctgagatgtcccatagcttttctagcaatgagaacactttcacaatcggcactcagcatgcacttgaccccttaacctcagtgaaggctcgggtgaacaactacggcagggcaagcgctcttatccagcatgagtggcgtcccaagtccttgttcactatctcaggagaggttgacacgagggcaattgagaagagtgcaaagatcggtttggccttggcactcaagccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009526 GO:0009527 GO:0009536 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0034220 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098656 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

237

Amino Acids

25.11

Weight (kDa)

6.22

Isoelectric Point (pI)

10.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01280 AT5G15090 AT5G15090
fragaria_vesca	FvH4_4g16150 FvH4_4g31911 FvH4_6g49250
malus_domestica	MD09G1047200.v1.1 MD13G1078700.v1.1 MD16G1078300.v1.1 MD17G1047400.v1.1
prunus_persica	Prupe.1G268200_v2.0.a1 Prupe.3G271800_v2.0.a1
pyrus_communis	pycom111g03800 pycom13g06830 pycom16g06780 pycom17g04220
rosa_chinensis	RchiOBHm_Chr2g0169111 RchiOBHm_Chr4g0440571
rosa_laevigata	RLG00000006167 RLG00000021835
rosa_multiflora	Rmu_sc0011312.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082430 Rroxscaffold_5G00381400
rosa_rugosa	Rorug02G0537000 Rorug04G0326700
rosa_samantha	Rh2AG608900 Rh2BG621800 Rh2CG590500 Rh2DG632400 Rh4AG378500 Rh4AG378600 Rh4BG391200 Rh4CG405900 Rh4DG385100
rosa_wichuraiana	Rw2G050490 Rw4G032410 Rw4G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	370
AcuI	CTGAAG	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	619
AfaI	GTAC	2 cut(s)	177, 238
AfeI	AGCGCT	1 cut(s)	598
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	108, 209, 370
AjnI	CCWGG	1 cut(s)	145
AjuI	GAANNNNNNNTTGG	2 cut(s)	617, 649
AluBI	AGCT	4 cut(s)	61, 168, 434, 498
AluI	AGCT	4 cut(s)	61, 168, 434, 498
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	570
Aor51HI	AGCGCT	1 cut(s)	598
AoxI	GGCC	1 cut(s)	693
ApoI	RAATTY	1 cut(s)	370
Asp700I	GAANNNNTTC	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	599
AsuHPI	GGTGA	3 cut(s)	41, 431, 586
AvaI	CYCGRG	1 cut(s)	570
BauI	CACGAG	1 cut(s)	658
Bbv12I	GWGCWC	1 cut(s)	56
BceAI	ACGGC	2 cut(s)	458, 601
BcgI	CGANNNNNNTGC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	147
BclI	TGATCA	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	2 cut(s)	240, 504
BfoI	RGCGCY	1 cut(s)	600
BmcAI	AGTACT	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	570
BmrFI	CCNGG	1 cut(s)	147
BpuEI	CTTGAG	2 cut(s)	137, 689
BsaHI	GRCGYC	1 cut(s)	619
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	244, 696
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse3DI	GCAATG	2 cut(s)	390, 514
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	244, 696
BseGI	GGATG	2 cut(s)	52, 375
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	2 cut(s)	390, 514
BseMII	CTCAG	5 cut(s)	71, 474, 548, 573, 657
BseYI	CCCAGC	1 cut(s)	362
BshFI	GGCC	1 cut(s)	695
BsiHKAI	GWGCWC	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	570
BslFI	GGGAC	2 cut(s)	475, 606
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	2 cut(s)	475, 606
BsnI	GGCC	1 cut(s)	695
Bso31I	GGTCTC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	570
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	3 cut(s)	31, 181, 684
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	695
BspCNI	CTCAG	5 cut(s)	70, 475, 547, 572, 656
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	2 cut(s)	390, 514
BssECI	CCNNGG	2 cut(s)	244, 696
BssMI	GATC	3 cut(s)	31, 181, 684
BssNI	GRCGYC	1 cut(s)	619
BssSI	CACGAG	1 cut(s)	658
BssT1I	CCWWGG	2 cut(s)	244, 696
Bst2BI	CACGAG	1 cut(s)	658
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	451
Bst6I	CTCTTC	1 cut(s)	668
BstACI	GRCGYC	1 cut(s)	619
BstC8I	GCNNGC	2 cut(s)	540, 595
BstDEI	CTNAG	5 cut(s)	57, 483, 534, 559, 643
BstF5I	GGATG	2 cut(s)	52, 375
BstH2I	RGCGCY	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	3 cut(s)	34, 184, 687
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	3 cut(s)	31, 181, 684
BstMWI	GCNNNNNNNGC	4 cut(s)	479, 504, 594, 616
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	542
BstSCI	CCNGG	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	695
BtsCI	GGATG	2 cut(s)	52, 375
BtsI	GCAGTG	3 cut(s)	294, 330, 468
BtsIMutI	CAGTG	4 cut(s)	294, 330, 468, 567
Cac8I	GCNNGC	2 cut(s)	540, 595
CfoI	GCGC	1 cut(s)	599
CseI	GACGC	1 cut(s)	608
CsiI	ACCWGGT	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	176, 237
CviAII	CATG	4 cut(s)	218, 539, 611, 711
CviJI	RGCY	9 cut(s)	61, 168, 243, 434, 456, 498, 569, 695, 709
CviKI_1	RGCY	9 cut(s)	61, 168, 243, 434, 456, 498, 569, 695, 709
CviQI	GTAC	2 cut(s)	176, 237
DdeI	CTNAG	5 cut(s)	57, 483, 534, 559, 643
DpnI	GATC	3 cut(s)	33, 183, 686
DpnII	GATC	3 cut(s)	31, 181, 684
Eam1104I	CTCTTC	1 cut(s)	668
EarI	CTCTTC	1 cut(s)	668
Eco130I	CCWWGG	2 cut(s)	244, 696
Eco31I	GGTCTC	1 cut(s)	155
Eco47III	AGCGCT	1 cut(s)	598
Eco57I	CTGAAG	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	570
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	2 cut(s)	244, 696
ErhI	CCWWGG	2 cut(s)	244, 696
FaeI	CATG	4 cut(s)	221, 542, 614, 714
FaiI	YATR	7 cut(s)	219, 225, 381, 495, 540, 612, 712
FalI	AAGNNNNNCTT	4 cut(s)	18, 50, 146, 178
FaqI	GGGAC	2 cut(s)	475, 606
FatI	CATG	4 cut(s)	217, 538, 610, 710
FauI	CCCGC	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	181
FokI	GGATG	2 cut(s)	59, 362
FspBI	CTAG	2 cut(s)	240, 504
GlaI	GCGC	1 cut(s)	598
GsaI	CCCAGC	1 cut(s)	366
HaeII	RGCGCY	1 cut(s)	600
HaeIII	GGCC	1 cut(s)	695
HgaI	GACGC	1 cut(s)	608
HhaI	GCGC	1 cut(s)	599
Hin1I	GRCGYC	1 cut(s)	619
Hin1II	CATG	4 cut(s)	221, 542, 614, 714
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HphI	GGTGA	3 cut(s)	41, 431, 586
Hpy166II	GTNNAC	3 cut(s)	577, 636, 655
Hpy188III	TCNNGA	2 cut(s)	192, 645
Hpy8I	GTNNAC	3 cut(s)	577, 636, 655
HpyAV	CCTTC	2 cut(s)	122, 559
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4V	TGCA	2 cut(s)	542, 680
HpyF10VI	GCNNNNNNNGC	4 cut(s)	479, 504, 594, 616
HpyF3I	CTNAG	5 cut(s)	57, 483, 534, 559, 643
Hsp92I	GRCGYC	1 cut(s)	619
Hsp92II	CATG	4 cut(s)	221, 542, 614, 714
HspAI	GCGC	1 cut(s)	597
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	31, 181, 684
MabI	ACCWGGT	1 cut(s)	145
MaeI	CTAG	2 cut(s)	240, 504
MalI	GATC	3 cut(s)	33, 183, 686
MboI	GATC	3 cut(s)	31, 181, 684
MboII	GAAGA	3 cut(s)	26, 76, 685
MfeI	CAATTG	1 cut(s)	666
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	4 cut(s)	18, 103, 370, 666
MnlI	CCTC	6 cut(s)	346, 398, 406, 568, 643, 654
MroXI	GAANNNNTTC	1 cut(s)	518
MseI	TTAA	4 cut(s)	21, 90, 270, 554
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	61
MspR9I	CCNGG	1 cut(s)	147
MunI	CAATTG	1 cut(s)	666
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	4 cut(s)	479, 504, 594, 616
NdeII	GATC	3 cut(s)	31, 181, 684
NlaIII	CATG	4 cut(s)	221, 542, 614, 714
NspI	RCATGY	1 cut(s)	542
PaeI	GCATGC	1 cut(s)	542
PdmI	GAANNNNTTC	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	61
RsaI	GTAC	2 cut(s)	177, 238
RsaNI	GTAC	2 cut(s)	176, 237
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	4 cut(s)	21, 90, 270, 554
Sau3AI	GATC	3 cut(s)	31, 181, 684
ScaI	AGTACT	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	56
SexAI	ACCWGGT	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	2 cut(s)	152, 704
SmoI	CTYRAG	2 cut(s)	152, 704
SphI	GCATGC	1 cut(s)	542
Sse9I	AATT	4 cut(s)	18, 103, 370, 666
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	2 cut(s)	240, 504
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	2 cut(s)	244, 696
TaaI	ACNGT	1 cut(s)	451
TaqI	TCGA	1 cut(s)	11
TasI	AATT	4 cut(s)	18, 103, 370, 666
TatI	WGTACW	1 cut(s)	236
Tru1I	TTAA	4 cut(s)	21, 90, 270, 554
Tru9I	TTAA	4 cut(s)	21, 90, 270, 554
TscAI	CASTG	4 cut(s)	301, 337, 475, 567
TspDTI	ATGAA	2 cut(s)	160, 364
TspRI	CASTG	4 cut(s)	301, 337, 475, 567
XapI	RAATTY	1 cut(s)	370
XceI	RCATGY	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	518
XspI	CTAG	2 cut(s)	240, 504
ZrmI	AGTACT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.