Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003226

Physical Location & Seq

Genomic Coordinates Reverse (-)

30815879 .. 30818750

Gene Structure 2872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31911.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGTGAAGGGTCCCGGTCTCTACTCCGATATCGGCAAGAAAGCCAGAGATCTTCTTTACAGGGATTACCAGACCGACCACAAGTTCACCGTCACCACTCTCACCGCTTCTGGAGTTGCGATTACCTCGAGTGGAATTAAGAAAGGTGATCTTCTTTTGGGGGACGTCAGCACTCAGCTCAAGAACAAGAACATCACTACTGATGTTAAAGTTGATACCAATTCAAATCTTCTCGCAACTATTACTGTTGACGAGCCTGCACCTGGTCTCAAGGCAATCTTGAGTTTCATTGTACCTGATCAGAAATCTGCGAGGGTAGAACTTCAATACCAGCATGAGTATGCTGGAATAAGCACTAGCCTTGGATTGACTGCGAATCCTGTTATTAACTTTTCTGGTGTTGTTGGGAACGCTGCCCTATCTCTTGGAACAGATGTTTCATTTGACACTGCCTCTGGGAACTTGACCAAACTCAATGCTGGGTTGAATTTCATCCATACCGACCTCATTGCCTCCTTGCTTGTGAATGACAAGGGTGATACCCTCACTGCTTCCTACTACCAGACTGTCAGCCCTATTACTTGCACTGCCGTTGGTGCGGAGCTGTCTCACAGCTTTTCCAGCAACGAGAACACCTTCACCATTGGCACTCAGCATGCACTTGACCCCCTAACCTCAGTGAAGGCTCGGGTGAACAACTATGGCAGGGCAAGCGCTCTCATCCAGCACGAGTGGCGTCCCAAGTCTTTGTTTACTATCTCAGGAGAGGTTGACACAAGGGCAATCGAGAAGAGTGCAAAGATCGGTCTGGCCTTGGCACTGAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009526 GO:0009527 GO:0009536 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0034220 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098656 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

277

Amino Acids

29.34

Weight (kDa)

7.02

Isoelectric Point (pI)

11.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	4 - 269	9.7e-86	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01280 AT5G15090 AT5G15090
fragaria_vesca	FvH4_4g16150 FvH4_4g31911 FvH4_6g49250
malus_domestica	MD09G1047200.v1.1 MD13G1078700.v1.1 MD16G1078300.v1.1 MD17G1047400.v1.1
prunus_persica	Prupe.1G268200_v2.0.a1 Prupe.3G271800_v2.0.a1
pyrus_communis	pycom111g03800 pycom13g06830 pycom16g06780 pycom17g04220
rosa_chinensis	RchiOBHm_Chr2g0169111 RchiOBHm_Chr4g0440571
rosa_laevigata	RLG00000006167 RLG00000021835
rosa_multiflora	Rmu_sc0011312.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082430 Rroxscaffold_5G00381400
rosa_rugosa	Rorug02G0537000 Rorug04G0326700
rosa_samantha	Rh2AG608900 Rh2BG621800 Rh2CG590500 Rh2DG632400 Rh4AG378500 Rh4AG378600 Rh4BG391200 Rh4CG405900 Rh4DG385100
rosa_wichuraiana	Rw2G050490 Rw4G032410 Rw4G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	168
AciI	CCGC	2 cut(s)	105, 599
AcsI	RAATTY	1 cut(s)	487
AcyI	GRCGYC	2 cut(s)	165, 736
AfaI	GTAC	1 cut(s)	294
AfeI	AGCGCT	1 cut(s)	715
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	3 cut(s)	225, 326, 487
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	3 cut(s)	178, 604, 615
AluI	AGCT	3 cut(s)	178, 604, 615
Alw26I	GTCTC	3 cut(s)	23, 272, 612
Ama87I	CYCGRG	2 cut(s)	127, 687
Aor51HI	AGCGCT	1 cut(s)	715
AoxI	GGCC	1 cut(s)	810
ApeKI	GCWGC	1 cut(s)	413
ApoI	RAATTY	1 cut(s)	487
Asp700I	GAANNNNTTC	1 cut(s)	635
AspLEI	GCGC	1 cut(s)	716
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	15
AsuHPI	GGTGA	8 cut(s)	16, 79, 85, 94, 158, 548, 631, 703
AvaI	CYCGRG	2 cut(s)	127, 687
AvaII	GGWCC	1 cut(s)	11
BauI	CACGAG	1 cut(s)	728
BbvI	GCAGC	1 cut(s)	400
BceAI	ACGGC	1 cut(s)	575
BcgI	CGANNNNNNTGC	4 cut(s)	491, 525, 776, 810
BciT130I	CCWGG	1 cut(s)	264
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	15
BcoDI	GTCTC	3 cut(s)	23, 272, 612
BfaI	CTAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	717
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	1 cut(s)	414
BlsI	GCNGC	1 cut(s)	415
Bme1390I	CCNGG	2 cut(s)	15, 264
Bme18I	GGWCC	1 cut(s)	11
BmeT110I	CYCGRG	2 cut(s)	127, 687
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	2 cut(s)	12, 13
BmrFI	CCNGG	2 cut(s)	15, 264
BpmI	CTGGAG	1 cut(s)	132
BpuEI	CTTGAG	3 cut(s)	164, 254, 301
BpuMI	CCSGG	1 cut(s)	15
BsaHI	GRCGYC	2 cut(s)	165, 736
BsaI	GGTCTC	2 cut(s)	23, 272
BsaJI	CCNNGG	2 cut(s)	361, 813
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	2 cut(s)	361, 813
BseGI	GGATG	2 cut(s)	492, 720
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	4 cut(s)	188, 665, 690, 774
BseXI	GCAGC	1 cut(s)	400
BseYI	CCCAGC	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	812
BsiHKCI	CYCGRG	2 cut(s)	127, 687
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	2 cut(s)	176, 723
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	3 cut(s)	23, 272, 612
BsmFI	GGGAC	2 cut(s)	176, 723
BsnI	GGCC	1 cut(s)	812
Bso31I	GGTCTC	2 cut(s)	23, 272
BsoBI	CYCGRG	2 cut(s)	127, 687
Bsp143I	GATC	4 cut(s)	49, 148, 298, 801
BspACI	CCGC	2 cut(s)	105, 599
BspANI	GGCC	1 cut(s)	812
BspCNI	CTCAG	4 cut(s)	187, 664, 689, 773
BspLI	GGNNCC	2 cut(s)	12, 13
BspTNI	GGTCTC	2 cut(s)	23, 272
BsrDI	GCAATG	1 cut(s)	507
BssECI	CCNNGG	2 cut(s)	361, 813
BssMI	GATC	4 cut(s)	49, 148, 298, 801
BssNI	GRCGYC	2 cut(s)	165, 736
BssSI	CACGAG	1 cut(s)	728
BssT1I	CCWWGG	2 cut(s)	361, 813
Bst2BI	CACGAG	1 cut(s)	728
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	3 cut(s)	91, 247, 568
Bst6I	CTCTTC	1 cut(s)	785
BstACI	GRCGYC	2 cut(s)	165, 736
BstC8I	GCNNGC	3 cut(s)	258, 657, 712
BstDEI	CTNAG	4 cut(s)	174, 651, 676, 760
BstF5I	GGATG	2 cut(s)	492, 720
BstH2I	RGCGCY	1 cut(s)	717
BstHHI	GCGC	1 cut(s)	716
BstKTI	GATC	4 cut(s)	52, 151, 301, 804
BstMAI	GTCTC	3 cut(s)	23, 272, 612
BstMBI	GATC	4 cut(s)	49, 148, 298, 801
BstMWI	GCNNNNNNNGC	4 cut(s)	596, 621, 711, 733
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	659
BstSCI	CCNGG	2 cut(s)	13, 262
BstV1I	GCAGC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	812
BtsCI	GGATG	2 cut(s)	492, 720
BtsI	GCAGTG	3 cut(s)	447, 546, 585
BtsIMutI	CAGTG	5 cut(s)	447, 546, 585, 684, 818
Cac8I	GCNNGC	3 cut(s)	258, 657, 712
CfoI	GCGC	1 cut(s)	716
Cfr13I	GGNCC	1 cut(s)	11
CseI	GACGC	1 cut(s)	725
CsiI	ACCWGGT	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	3 cut(s)	335, 656, 828
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	4 cut(s)	174, 651, 676, 760
DpnI	GATC	4 cut(s)	51, 150, 300, 803
DpnII	GATC	4 cut(s)	49, 148, 298, 801
Eam1104I	CTCTTC	1 cut(s)	785
EarI	CTCTTC	1 cut(s)	785
Eco130I	CCWWGG	2 cut(s)	361, 813
Eco31I	GGTCTC	2 cut(s)	23, 272
Eco32I	GATATC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	11
Eco47III	AGCGCT	1 cut(s)	715
Eco88I	CYCGRG	2 cut(s)	127, 687
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	262
EcoRV	GATATC	1 cut(s)	31
EcoT14I	CCWWGG	2 cut(s)	361, 813
ErhI	CCWWGG	2 cut(s)	361, 813
FaeI	CATG	3 cut(s)	338, 659, 831
FaiI	YATR	6 cut(s)	336, 342, 498, 657, 702, 829
FalI	AAGNNNNNCTT	4 cut(s)	135, 167, 263, 295
FaqI	GGGAC	2 cut(s)	176, 723
FatI	CATG	3 cut(s)	334, 655, 827
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	2 cut(s)	479, 707
Fsp4HI	GCNGC	1 cut(s)	414
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	1 cut(s)	715
GluI	GCNGC	1 cut(s)	414
GsaI	CCCAGC	1 cut(s)	483
GsuI	CTGGAG	1 cut(s)	132
HaeII	RGCGCY	1 cut(s)	717
HaeIII	GGCC	1 cut(s)	812
HapII	CCGG	1 cut(s)	15
HgaI	GACGC	1 cut(s)	725
HhaI	GCGC	1 cut(s)	716
Hin1I	GRCGYC	2 cut(s)	165, 736
Hin1II	CATG	3 cut(s)	338, 659, 831
Hin6I	GCGC	1 cut(s)	714
HinP1I	GCGC	1 cut(s)	714
HincII	GTYRAC	2 cut(s)	250, 772
HindII	GTYRAC	2 cut(s)	250, 772
HinfI	GANTC	1 cut(s)	376
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	8 cut(s)	16, 79, 85, 94, 158, 548, 631, 703
Hpy166II	GTNNAC	5 cut(s)	87, 250, 694, 753, 772
Hpy188I	TCNGA	2 cut(s)	28, 303
Hpy188III	TCNNGA	5 cut(s)	111, 181, 280, 762, 787
Hpy8I	GTNNAC	5 cut(s)	87, 250, 694, 753, 772
HpyAV	CCTTC	2 cut(s)	646, 676
HpyCH4III	ACNGT	3 cut(s)	91, 247, 568
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	4 cut(s)	260, 585, 659, 797
HpyF10VI	GCNNNNNNNGC	4 cut(s)	596, 621, 711, 733
HpyF3I	CTNAG	4 cut(s)	174, 651, 676, 760
HpySE526I	ACGT	1 cut(s)	165
Hsp92I	GRCGYC	2 cut(s)	165, 736
Hsp92II	CATG	3 cut(s)	338, 659, 831
HspAI	GCGC	1 cut(s)	714
KflI	GGGWCCC	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	49, 148, 298, 801
LmnI	GCTCC	1 cut(s)	601
Lsp1109I	GCAGC	1 cut(s)	400
MabI	ACCWGGT	1 cut(s)	262
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	4 cut(s)	51, 150, 300, 803
MboI	GATC	4 cut(s)	49, 148, 298, 801
MboII	GAAGA	4 cut(s)	44, 143, 221, 802
MflI	RGATCY	1 cut(s)	49
MluCI	AATT	3 cut(s)	135, 220, 487
MnlI	CCTC	8 cut(s)	136, 306, 463, 515, 523, 554, 685, 760
MroXI	GAANNNNTTC	1 cut(s)	635
MseI	TTAA	3 cut(s)	138, 207, 387
MslI	CAYNNNNRTG	1 cut(s)	339
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	2 cut(s)	15, 264
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	4 cut(s)	596, 621, 711, 733
NciI	CCSGG	1 cut(s)	15
NdeII	GATC	4 cut(s)	49, 148, 298, 801
NlaIII	CATG	3 cut(s)	338, 659, 831
NlaIV	GGNNCC	2 cut(s)	12, 13
NmuCI	GTSAC	1 cut(s)	91
NspI	RCATGY	1 cut(s)	659
PaeI	GCATGC	1 cut(s)	659
PaeR7I	CTCGAG	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	635
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	415
PpuMI	RGGWCCY	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	2 cut(s)	12, 13
PspPI	GGNCC	1 cut(s)	11
PspPPI	RGGWCCY	1 cut(s)	11
PspXI	VCTCGAGB	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	3 cut(s)	138, 207, 387
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	4 cut(s)	49, 148, 298, 801
Sau96I	GGNCC	1 cut(s)	11
ScrFI	CCNGG	2 cut(s)	15, 264
SexAI	ACCWGGT	1 cut(s)	262
Sfr274I	CTCGAG	1 cut(s)	127
SinI	GGWCC	1 cut(s)	11
SlaI	CTCGAG	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	4 cut(s)	127, 179, 269, 280
SmoI	CTYRAG	4 cut(s)	127, 179, 269, 280
SphI	GCATGC	1 cut(s)	659
Sse9I	AATT	3 cut(s)	135, 220, 487
SsiI	CCGC	2 cut(s)	105, 599
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	2 cut(s)	13, 262
StyI	CCWWGG	2 cut(s)	361, 813
TaaI	ACNGT	3 cut(s)	91, 247, 568
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	2 cut(s)	128, 786
TaqII	GACCGA	2 cut(s)	89, 794
TasI	AATT	3 cut(s)	135, 220, 487
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	3 cut(s)	138, 207, 387
Tru9I	TTAA	3 cut(s)	138, 207, 387
TscAI	CASTG	5 cut(s)	454, 553, 592, 684, 825
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	3 cut(s)	277, 429, 481
TspRI	CASTG	5 cut(s)	454, 553, 592, 684, 825
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	1 cut(s)	487
XceI	RCATGY	1 cut(s)	659
XhoI	CTCGAG	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	635
XspI	CTAG	1 cut(s)	357
ZraI	GACGTC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.