Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003226

Physical Location & Seq

Genomic Coordinates Reverse (-)

59555931 .. 59558572

Gene Structure 2642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G032410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCAGGCCTCAACTTACTGGATGTTTGGTGATCTTCTTGTGGGGGATGTGAGCACTCAGCTGAAGAACAAGAACATCACAACGGATGTTAAAGTTGATACCAATTCGAACGTGGAACTTCAATACCAGCACGAGTATGCTGGAATAAGTACTAGCCTTGGATTGACTGCCAACCCTGTTATTAACTTTTCTGGTGTTGTTGGGAACACTGCTCTCTCTCTTGGAACTGATGTTTCCTTTGACACTGCCTCTGGGAACTTGACCAAACTCAATGCTGGGTTGAATTTCATCCATACTGACCTCATTGCCTCCCTGCTTGTGAATGACAAGGGTGATACTCTCACAGCTTCCTATTACCAGACTGTTAGCCCCCTTACTAACACTGCCGTTGGTGCTGAGATGTCCCATAGCTTTTCTAGCAATGAGAACACTTTCACAATCGGCACTCAGCATGCACTTGACCCCTTAACCTCAGTGAAGGCTCGGGTGAACAACTACGGCAGGGCAAGCGCTCTTATCCAGCATGAGTGGCGTCCCAAGTCCTTGTTCACTATCTCAGGAGAGGTTGACACGAGGGCAATTGAGAAGAGTGCAAAGATCGGTTTGGCCTTGGCACTCAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009526 GO:0009527 GO:0009536 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0034220 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098656 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

208

Amino Acids

22.27

Weight (kDa)

5.66

Isoelectric Point (pI)

8.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	29 - 201	4.6e-55	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01280 AT5G15090 AT5G15090
fragaria_vesca	FvH4_4g16150 FvH4_4g31911 FvH4_6g49250
malus_domestica	MD09G1047200.v1.1 MD13G1078700.v1.1 MD16G1078300.v1.1 MD17G1047400.v1.1
prunus_persica	Prupe.1G268200_v2.0.a1 Prupe.3G271800_v2.0.a1
pyrus_communis	pycom111g03800 pycom13g06830 pycom16g06780 pycom17g04220
rosa_chinensis	RchiOBHm_Chr2g0169111 RchiOBHm_Chr4g0440571
rosa_laevigata	RLG00000006167 RLG00000021835
rosa_multiflora	Rmu_sc0011312.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082430 Rroxscaffold_5G00381400
rosa_rugosa	Rorug02G0537000 Rorug04G0326700
rosa_samantha	Rh2AG608900 Rh2BG621800 Rh2CG590500 Rh2DG632400 Rh4AG378500 Rh4AG378600 Rh4BG391200 Rh4CG405900 Rh4DG385100
rosa_wichuraiana	Rw2G050490 Rw4G032410 Rw4G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	532
AfaI	GTAC	1 cut(s)	151
AfeI	AGCGCT	1 cut(s)	511
AgsI	TTSAA	2 cut(s)	122, 283
AjuI	GAANNNNNNNTTGG	2 cut(s)	530, 562
AluBI	AGCT	3 cut(s)	61, 347, 411
AluI	AGCT	3 cut(s)	61, 347, 411
Alw21I	GWGCWC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	483
Aor51HI	AGCGCT	1 cut(s)	511
AoxI	GGCC	2 cut(s)	6, 606
ApoI	RAATTY	1 cut(s)	283
Asp700I	GAANNNNTTC	1 cut(s)	431
AspLEI	GCGC	1 cut(s)	512
AsuHPI	GGTGA	3 cut(s)	41, 344, 499
AsuII	TTCGAA	1 cut(s)	107
AvaI	CYCGRG	1 cut(s)	483
BauI	CACGAG	2 cut(s)	131, 571
Bbv12I	GWGCWC	1 cut(s)	56
BceAI	ACGGC	2 cut(s)	371, 514
BfaI	CTAG	2 cut(s)	153, 417
BfoI	RGCGCY	1 cut(s)	513
BmcAI	AGTACT	1 cut(s)	151
BmeT110I	CYCGRG	1 cut(s)	483
Bpu14I	TTCGAA	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	602
BsaHI	GRCGYC	1 cut(s)	532
BsaJI	CCNNGG	2 cut(s)	157, 609
Bse1I	ACTGG	1 cut(s)	23
Bse3DI	GCAATG	2 cut(s)	303, 427
BseDI	CCNNGG	2 cut(s)	157, 609
BseGI	GGATG	4 cut(s)	27, 52, 91, 288
BseMI	GCAATG	2 cut(s)	303, 427
BseMII	CTCAG	5 cut(s)	71, 387, 461, 486, 570
BseNI	ACTGG	1 cut(s)	23
BseYI	CCCAGC	1 cut(s)	275
BshFI	GGCC	2 cut(s)	8, 608
BsiHKAI	GWGCWC	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	483
BslFI	GGGAC	2 cut(s)	388, 519
BsmFI	GGGAC	2 cut(s)	388, 519
BsnI	GGCC	2 cut(s)	8, 608
BsoBI	CYCGRG	1 cut(s)	483
Bsp119I	TTCGAA	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	31, 597
BspANI	GGCC	2 cut(s)	8, 608
BspCNI	CTCAG	5 cut(s)	70, 388, 460, 485, 569
BspT104I	TTCGAA	1 cut(s)	107
BsrDI	GCAATG	2 cut(s)	303, 427
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	2 cut(s)	157, 609
BssMI	GATC	2 cut(s)	31, 597
BssNI	GRCGYC	1 cut(s)	532
BssSI	CACGAG	2 cut(s)	131, 571
BssT1I	CCWWGG	2 cut(s)	157, 609
Bst2BI	CACGAG	2 cut(s)	131, 571
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	581
BstACI	GRCGYC	1 cut(s)	532
BstBI	TTCGAA	1 cut(s)	107
BstC8I	GCNNGC	3 cut(s)	6, 453, 508
BstDEI	CTNAG	5 cut(s)	57, 396, 447, 472, 556
BstF5I	GGATG	4 cut(s)	27, 52, 91, 288
BstH2I	RGCGCY	1 cut(s)	513
BstHHI	GCGC	1 cut(s)	512
BstKTI	GATC	2 cut(s)	34, 600
BstMBI	GATC	2 cut(s)	31, 597
BstMWI	GCNNNNNNNGC	4 cut(s)	392, 417, 507, 529
BstNSI	RCATGY	1 cut(s)	455
BsuRI	GGCC	2 cut(s)	8, 608
BtsCI	GGATG	4 cut(s)	27, 52, 91, 288
BtsI	GCAGTG	3 cut(s)	207, 243, 381
BtsIMutI	CAGTG	4 cut(s)	207, 243, 381, 480
Cac8I	GCNNGC	3 cut(s)	6, 453, 508
CfoI	GCGC	1 cut(s)	512
CseI	GACGC	1 cut(s)	521
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	3 cut(s)	452, 524, 624
CviJI	RGCY	9 cut(s)	8, 61, 156, 347, 369, 411, 482, 608, 622
CviKI_1	RGCY	9 cut(s)	8, 61, 156, 347, 369, 411, 482, 608, 622
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	5 cut(s)	57, 396, 447, 472, 556
DpnI	GATC	2 cut(s)	33, 599
DpnII	GATC	2 cut(s)	31, 597
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
Eco130I	CCWWGG	2 cut(s)	157, 609
Eco147I	AGGCCT	1 cut(s)	8
Eco47III	AGCGCT	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	483
EcoT14I	CCWWGG	2 cut(s)	157, 609
ErhI	CCWWGG	2 cut(s)	157, 609
FaeI	CATG	3 cut(s)	455, 527, 627
FaiI	YATR	6 cut(s)	138, 294, 408, 453, 525, 625
FaqI	GGGAC	2 cut(s)	388, 519
FatI	CATG	3 cut(s)	451, 523, 623
FokI	GGATG	4 cut(s)	34, 59, 98, 275
FspBI	CTAG	2 cut(s)	153, 417
GlaI	GCGC	1 cut(s)	511
GsaI	CCCAGC	1 cut(s)	279
HaeII	RGCGCY	1 cut(s)	513
HaeIII	GGCC	2 cut(s)	8, 608
HgaI	GACGC	1 cut(s)	521
HhaI	GCGC	1 cut(s)	512
Hin1I	GRCGYC	1 cut(s)	532
Hin1II	CATG	3 cut(s)	455, 527, 627
Hin6I	GCGC	1 cut(s)	510
HinP1I	GCGC	1 cut(s)	510
HincII	GTYRAC	1 cut(s)	568
HindII	GTYRAC	1 cut(s)	568
HphI	GGTGA	3 cut(s)	41, 344, 499
Hpy166II	GTNNAC	3 cut(s)	490, 549, 568
Hpy188III	TCNNGA	1 cut(s)	558
Hpy8I	GTNNAC	3 cut(s)	490, 549, 568
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	3 cut(s)	4, 455, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	392, 417, 507, 529
HpyF3I	CTNAG	5 cut(s)	57, 396, 447, 472, 556
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	532
Hsp92II	CATG	3 cut(s)	455, 527, 627
HspAI	GCGC	1 cut(s)	510
Kzo9I	GATC	2 cut(s)	31, 597
MaeI	CTAG	2 cut(s)	153, 417
MaeII	ACGT	1 cut(s)	111
MalI	GATC	2 cut(s)	33, 599
MboI	GATC	2 cut(s)	31, 597
MboII	GAAGA	3 cut(s)	26, 76, 598
MfeI	CAATTG	1 cut(s)	579
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	3 cut(s)	103, 283, 579
MnlI	CCTC	7 cut(s)	19, 259, 311, 319, 481, 556, 567
MroXI	GAANNNNTTC	1 cut(s)	431
MseI	TTAA	3 cut(s)	90, 183, 467
MslI	CAYNNNNRTG	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	61
MunI	CAATTG	1 cut(s)	579
MwoI	GCNNNNNNNGC	4 cut(s)	392, 417, 507, 529
NdeII	GATC	2 cut(s)	31, 597
NlaIII	CATG	3 cut(s)	455, 527, 627
NspI	RCATGY	1 cut(s)	455
NspV	TTCGAA	1 cut(s)	107
PaeI	GCATGC	1 cut(s)	455
PceI	AGGCCT	1 cut(s)	8
PdmI	GAANNNNTTC	1 cut(s)	431
PspFI	CCCAGC	1 cut(s)	275
PvuII	CAGCTG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
RseI	CAYNNNNRTG	1 cut(s)	135
SaqAI	TTAA	3 cut(s)	90, 183, 467
Sau3AI	GATC	2 cut(s)	31, 597
ScaI	AGTACT	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	7 cut(s)	63, 114, 303, 349, 413, 473, 567
SfuI	TTCGAA	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SphI	GCATGC	1 cut(s)	455
Sse9I	AATT	3 cut(s)	103, 283, 579
SseBI	AGGCCT	1 cut(s)	8
SspMI	CTAG	2 cut(s)	153, 417
StuI	AGGCCT	1 cut(s)	8
StyI	CCWWGG	2 cut(s)	157, 609
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	107
TasI	AATT	3 cut(s)	103, 283, 579
TatI	WGTACW	1 cut(s)	149
Tru1I	TTAA	3 cut(s)	90, 183, 467
Tru9I	TTAA	3 cut(s)	90, 183, 467
TscAI	CASTG	4 cut(s)	214, 250, 388, 480
TspDTI	ATGAA	1 cut(s)	277
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	4 cut(s)	214, 250, 388, 480
XapI	RAATTY	1 cut(s)	283
XceI	RCATGY	1 cut(s)	455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	2 cut(s)	153, 417
ZrmI	AGTACT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.