Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003226

Physical Location & Seq

Genomic Coordinates Reverse (-)

4517919 .. 4520630

Gene Structure 2712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06830.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGTGAAGGGCCCAGGACTCTATCTCGATATCGGCAAGAAAGCCAGAGATCTTCTTTACAAGGATTACCAGAGCGACCACAAGTTCACCGTCACCACTTACACTTCCACCGGAGTTGCAATCAGTTCGACTGGAATCAGGAAGGGTGATCTGTATTTGGGGGATGTCAGTACTCAGCTGAAGAACAAGAACATCACAACTGATGTGAAAGTTGACACCAACTCTAACGTTATCACGACCATTACTGTTGATGAACCTGCACCTGGTCTCAAGGCAATCTTTAGCTTTATTGCACCTGACCAGAGATCTGGCAAGGTGGAACTCCAATATCAGCATGAGTATGCTGGGATAAGTACCAGCATTGGGTTGACTGCCAATCCGATTGTTAACTTTTCTGGTGTTGTGGGGAACAATCTTCTCTCTCTGGGAACCGATCTTTCTTTCGACACTGCTTCTGGGAACTTTACCAAAGTGAATGCAGGGTTGAATTTCACCCATTCTGACCTCATTGCTTCCCTGTTACTGAACGATAAAGCTGATACTATTACTGCTTCCTACTACCACACTGTAAGCCCACTCACCAACACTGCTGTTGGTGCGGAGCTGGCCCATAGCTTTTCAAGCAATGAAAACAGCCTCACAATCGGCACAGCGCATGCACTTGACCCTCTAACTACAGTGAAGGCTCGGGTGAATAACTACGGCAGGGCAAGCGCTCTCATCCAGCACGAGTGGCGTCCCAAGTCATTCTTCACCATCTCAGGAGAGGTCGATACCAGGGCAATAGAGAAGAGCGCAAAGGTCGGTCTAGCCTTGGCACTCAAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009526 GO:0009527 GO:0009536 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0034220 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098656 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

277

Amino Acids

29.55

Weight (kDa)

7.06

Isoelectric Point (pI)

8.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01280 AT5G15090 AT5G15090
fragaria_vesca	FvH4_4g16150 FvH4_4g31911 FvH4_6g49250
malus_domestica	MD09G1047200.v1.1 MD13G1078700.v1.1 MD16G1078300.v1.1 MD17G1047400.v1.1
prunus_persica	Prupe.1G268200_v2.0.a1 Prupe.3G271800_v2.0.a1
pyrus_communis	pycom111g03800 pycom13g06830 pycom16g06780 pycom17g04220
rosa_chinensis	RchiOBHm_Chr2g0169111 RchiOBHm_Chr4g0440571
rosa_laevigata	RLG00000006167 RLG00000021835
rosa_multiflora	Rmu_sc0011312.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082430 Rroxscaffold_5G00381400
rosa_rugosa	Rorug02G0537000 Rorug04G0326700
rosa_samantha	Rh2AG608900 Rh2BG621800 Rh2CG590500 Rh2DG632400 Rh4AG378500 Rh4AG378600 Rh4BG391200 Rh4CG405900 Rh4DG385100
rosa_wichuraiana	Rw2G050490 Rw4G032410 Rw4G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	265
AciI	CCGC	1 cut(s)	599
AclI	AACGTT	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	487
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	736
AfaI	GTAC	2 cut(s)	172, 355
AfeI	AGCGCT	1 cut(s)	715
AfiI	CCNNNNNNNGG	2 cut(s)	263, 363
AgsI	TTSAA	2 cut(s)	487, 621
AjnI	CCWGG	3 cut(s)	13, 262, 776
AjuI	GAANNNNNNNTTGG	2 cut(s)	734, 766
AluBI	AGCT	5 cut(s)	178, 285, 536, 604, 615
AluI	AGCT	5 cut(s)	178, 285, 536, 604, 615
Alw26I	GTCTC	1 cut(s)	272
Ama87I	CYCGRG	1 cut(s)	687
Aor51HI	AGCGCT	1 cut(s)	715
AoxI	GGCC	2 cut(s)	10, 606
ApaI	GGGCCC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	487
AspLEI	GCGC	3 cut(s)	655, 716, 797
AspS9I	GGNCC	3 cut(s)	10, 11, 607
AsuHPI	GGTGA	8 cut(s)	16, 79, 85, 158, 484, 571, 703, 745
AvaI	CYCGRG	1 cut(s)	687
BaeGI	GKGCMC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	14
BauI	CACGAG	1 cut(s)	728
BccI	CCATC	1 cut(s)	764
BceAI	ACGGC	1 cut(s)	718
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BciT130I	CCWGG	3 cut(s)	15, 264, 778
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	2 cut(s)	809, 829
BfmI	CTRYAG	1 cut(s)	675
BfoI	RGCGCY	1 cut(s)	717
BfuAI	ACCTGC	1 cut(s)	265
BglII	AGATCT	2 cut(s)	49, 305
BmcAI	AGTACT	1 cut(s)	172
Bme1390I	CCNGG	3 cut(s)	15, 264, 778
BmeT110I	CYCGRG	1 cut(s)	687
BmgT120I	GGNCC	3 cut(s)	10, 11, 607
BmiI	GGNNCC	2 cut(s)	12, 430
BmrFI	CCNGG	3 cut(s)	15, 264, 778
BpuEI	CTTGAG	2 cut(s)	254, 806
BsaHI	GRCGYC	1 cut(s)	736
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	3 cut(s)	13, 777, 813
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 363
Bse1I	ACTGG	1 cut(s)	136
Bse3DI	GCAATG	2 cut(s)	507, 631
BseBI	CCWGG	3 cut(s)	15, 264, 778
BseDI	CCNNGG	3 cut(s)	13, 777, 813
BseGI	GGATG	2 cut(s)	169, 720
BseLI	CCNNNNNNNGG	2 cut(s)	263, 363
BseMI	GCAATG	2 cut(s)	507, 631
BseMII	CTCAG	2 cut(s)	188, 774
BseNI	ACTGG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	14
BseYI	CCCAGC	1 cut(s)	344
BsgI	GTGCAG	1 cut(s)	243
BshFI	GGCC	2 cut(s)	12, 608
BsiHKCI	CYCGRG	1 cut(s)	687
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	723
BslI	CCNNNNNNNGG	2 cut(s)	263, 363
BsmAI	GTCTC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	723
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	2 cut(s)	12, 608
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	687
Bsp120I	GGGCCC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	4 cut(s)	49, 148, 305, 433
BspACI	CCGC	1 cut(s)	599
BspANI	GGCC	2 cut(s)	12, 608
BspCNI	CTCAG	2 cut(s)	187, 773
BspLI	GGNNCC	2 cut(s)	12, 430
BspMI	ACCTGC	1 cut(s)	265
BspQI	GCTCTTC	1 cut(s)	785
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	2 cut(s)	507, 631
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	3 cut(s)	13, 777, 813
BssMI	GATC	4 cut(s)	49, 148, 305, 433
BssNI	GRCGYC	1 cut(s)	736
BssSI	CACGAG	1 cut(s)	728
BssT1I	CCWWGG	1 cut(s)	813
Bst2BI	CACGAG	1 cut(s)	728
Bst2UI	CCWGG	3 cut(s)	15, 264, 778
Bst4CI	ACNGT	4 cut(s)	91, 247, 568, 679
Bst6I	CTCTTC	1 cut(s)	785
BstACI	GRCGYC	1 cut(s)	736
BstC8I	GCNNGC	3 cut(s)	606, 657, 712
BstDEI	CTNAG	2 cut(s)	174, 760
BstF5I	GGATG	2 cut(s)	169, 720
BstH2I	RGCGCY	1 cut(s)	717
BstHHI	GCGC	3 cut(s)	655, 716, 797
BstKTI	GATC	4 cut(s)	52, 151, 308, 436
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	4 cut(s)	49, 148, 305, 433
BstMWI	GCNNNNNNNGC	5 cut(s)	596, 605, 621, 711, 733
BstNI	CCWGG	3 cut(s)	15, 264, 778
BstNSI	RCATGY	1 cut(s)	659
BstSCI	CCNGG	3 cut(s)	13, 262, 776
BstSFI	CTRYAG	1 cut(s)	675
BstSLI	GKGCMC	1 cut(s)	14
BstX2I	RGATCY	2 cut(s)	49, 305
BstXI	CCANNNNNNTGG	1 cut(s)	308
BstYI	RGATCY	2 cut(s)	49, 305
BsuRI	GGCC	2 cut(s)	12, 608
BtsCI	GGATG	2 cut(s)	169, 720
BtsI	GCAGTG	2 cut(s)	447, 585
BtsIMutI	CAGTG	4 cut(s)	447, 564, 585, 684
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	3 cut(s)	606, 657, 712
CfoI	GCGC	3 cut(s)	655, 716, 797
Cfr13I	GGNCC	3 cut(s)	10, 11, 607
CseI	GACGC	1 cut(s)	725
CsiI	ACCWGGT	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	171, 354
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviAII	CATG	2 cut(s)	335, 656
CviQI	GTAC	2 cut(s)	171, 354
DdeI	CTNAG	2 cut(s)	174, 760
DpnI	GATC	4 cut(s)	51, 150, 307, 435
DpnII	GATC	4 cut(s)	49, 148, 305, 433
Eam1104I	CTCTTC	1 cut(s)	785
EarI	CTCTTC	1 cut(s)	785
Eco130I	CCWWGG	1 cut(s)	813
Eco24I	GRGCYC	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	272
Eco32I	GATATC	1 cut(s)	31
Eco47III	AGCGCT	1 cut(s)	715
Eco57I	CTGAAG	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	687
EcoO109I	RGGNCCY	1 cut(s)	10
EcoRII	CCWGG	3 cut(s)	13, 262, 776
EcoRV	GATATC	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	813
EcoT38I	GRGCYC	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	813
FaeI	CATG	2 cut(s)	338, 659
FaiI	YATR	4 cut(s)	336, 342, 612, 657
FalI	AAGNNNNNCTT	4 cut(s)	263, 295, 734, 766
FaqI	GGGAC	1 cut(s)	723
FatI	CATG	2 cut(s)	334, 655
FokI	GGATG	2 cut(s)	176, 707
FriOI	GRGCYC	1 cut(s)	14
FspBI	CTAG	2 cut(s)	809, 829
GlaI	GCGC	3 cut(s)	654, 715, 796
GsaI	CCCAGC	1 cut(s)	348
HaeII	RGCGCY	1 cut(s)	717
HaeIII	GGCC	2 cut(s)	12, 608
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	1 cut(s)	725
HhaI	GCGC	3 cut(s)	655, 716, 797
Hin1I	GRCGYC	1 cut(s)	736
Hin1II	CATG	2 cut(s)	338, 659
Hin6I	GCGC	3 cut(s)	653, 714, 795
HinP1I	GCGC	3 cut(s)	653, 714, 795
HincII	GTYRAC	3 cut(s)	214, 369, 388
HindII	GTYRAC	3 cut(s)	214, 369, 388
HinfI	GANTC	2 cut(s)	18, 135
HpaI	GTTAAC	1 cut(s)	388
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	8 cut(s)	16, 79, 85, 158, 484, 571, 703, 745
Hpy166II	GTNNAC	4 cut(s)	87, 214, 369, 388
Hpy188I	TCNGA	2 cut(s)	381, 502
Hpy188III	TCNNGA	4 cut(s)	26, 139, 235, 762
Hpy8I	GTNNAC	4 cut(s)	87, 214, 369, 388
HpyAV	CCTTC	2 cut(s)	136, 676
HpyCH4III	ACNGT	4 cut(s)	91, 247, 568, 679
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	5 cut(s)	119, 260, 293, 479, 659
HpyF10VI	GCNNNNNNNGC	5 cut(s)	596, 605, 621, 711, 733
HpyF3I	CTNAG	2 cut(s)	174, 760
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	1 cut(s)	736
Hsp92II	CATG	2 cut(s)	338, 659
HspAI	GCGC	3 cut(s)	653, 714, 795
KspAI	GTTAAC	1 cut(s)	388
Kzo9I	GATC	4 cut(s)	49, 148, 305, 433
LguI	GCTCTTC	1 cut(s)	785
LmnI	GCTCC	1 cut(s)	601
MabI	ACCWGGT	1 cut(s)	262
MaeI	CTAG	2 cut(s)	809, 829
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	91, 519
MalI	GATC	4 cut(s)	51, 150, 307, 435
MboI	GATC	4 cut(s)	49, 148, 305, 433
MboII	GAAGA	5 cut(s)	44, 193, 407, 742, 802
MflI	RGATCY	2 cut(s)	49, 305
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	1 cut(s)	487
MlyI	GAGTC	1 cut(s)	12
MnlI	CCTC	4 cut(s)	515, 647, 678, 760
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	178
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	3 cut(s)	15, 264, 778
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	3 cut(s)	15, 264, 778
MwoI	GCNNNNNNNGC	5 cut(s)	596, 605, 621, 711, 733
NdeII	GATC	4 cut(s)	49, 148, 305, 433
NlaIII	CATG	2 cut(s)	338, 659
NlaIV	GGNNCC	2 cut(s)	12, 430
NmuCI	GTSAC	1 cut(s)	91
NspI	RCATGY	1 cut(s)	659
PaeI	GCATGC	1 cut(s)	659
PciSI	GCTCTTC	1 cut(s)	785
PctI	GAATGC	1 cut(s)	481
PfeI	GAWTC	1 cut(s)	135
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	3 cut(s)	13, 262, 776
PspFI	CCCAGC	1 cut(s)	344
PspGI	CCWGG	3 cut(s)	13, 262, 776
PspN4I	GGNNCC	2 cut(s)	12, 430
PspOMI	GGGCCC	1 cut(s)	10
PspPI	GGNCC	3 cut(s)	10, 11, 607
PsuI	RGATCY	2 cut(s)	49, 305
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	2 cut(s)	172, 355
RsaNI	GTAC	2 cut(s)	171, 354
RseI	CAYNNNNRTG	1 cut(s)	339
SapI	GCTCTTC	1 cut(s)	785
SaqAI	TTAA	1 cut(s)	387
Sau3AI	GATC	4 cut(s)	49, 148, 305, 433
Sau96I	GGNCC	3 cut(s)	10, 11, 607
ScaI	AGTACT	1 cut(s)	172
SchI	GAGTC	1 cut(s)	12
ScrFI	CCNGG	3 cut(s)	15, 264, 778
SduI	GDGCHC	1 cut(s)	14
SexAI	ACCWGGT	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	675
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	2 cut(s)	269, 821
SmoI	CTYRAG	2 cut(s)	269, 821
SphI	GCATGC	1 cut(s)	659
Sse9I	AATT	1 cut(s)	487
SsiI	CCGC	1 cut(s)	599
SspMI	CTAG	2 cut(s)	809, 829
StyD4I	CCNGG	3 cut(s)	13, 262, 776
StyI	CCWWGG	1 cut(s)	813
TaaI	ACNGT	4 cut(s)	91, 247, 568, 679
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	4 cut(s)	27, 128, 444, 771
TaqII	GACCGA	1 cut(s)	794
TasI	AATT	1 cut(s)	487
TatI	WGTACW	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	4 cut(s)	454, 571, 592, 684
TseFI	GTSAC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	2 cut(s)	267, 642
TspRI	CASTG	4 cut(s)	454, 571, 592, 684
XapI	RAATTY	1 cut(s)	487
XceI	RCATGY	1 cut(s)	659
XspI	CTAG	2 cut(s)	809, 829
ZrmI	AGTACT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.