AT5G24290

Membrane protein of ER

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
8263111 .. 8265748
2638 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24290.2

Sequence Viewer

Length: 1653 bp
ATGGAAAAGTCAAACCAACCAGTTCATGTAACCTTGTCCGAATTGAAGGACGGAGATAAAGAAATCGTTGATGCTGAATTTTTGGTTGATCTTCTTGAGAGCTATAGATTTGGTAAAGATAATGTTCCCGCCCGAGAATTTCGATCCAAGGCGGCAGCGACGGCTCCGGCGCCGGTCAACACCACCGAGATAGAGTTGGAAGAGGATAATGATGGATCTCAAGCTCAAGGTAACAATTCTGTTAGTGAAAGTACATCATCGCTATTTTCCGATTCAGATCCAATAGTACTTGAGAGTACTGTGAGCGAAACCGGTTCAAACGAAGAATCTGAAACCGGTTCAAACGAAGAAAATGGTAATAATTGGTTAGAGTCGAGCTCCACAAACTTGCCAAATGTAGAGAACAAAAGGCAACGGAATGGAGAAGATTGTGAGATAGAAGAGGAAGAAGAAAATAACGAGAGATCATTATCGGATTCAGAAGAGAAGTCAAACCTAGAGAAGTTGCTTGGGACACAAGAAAACTATGAGCTTGGAAATGAGGATGAAGAAAAGAACGAGAGATCATCGTCAGATTCAGAAGAGAAGTCAAACCTAGAGAATTTGCTTGCGACACAAGAAAACTACGAGCTTTACTGTCCTAGCTGTAGCACATGTATCACCAGAAATGTGGTTCTCAAGAAAAGAAAACGAGGGAAGCACGTTAATTCATCTCTGGATCTGAAACCCGATATACCGGTTGTTGAACCGGACGAACCAAGCGACATTGAGGAGATGGAATCACCAGTTAAGGTTTATGTCCCTGAGACTCGGATTGAGGATGATCAAGAAGATAAAGAGGGAACTATCTTTACTTGCTTGGTTTGTGATCTAAAGTACTTCATCCGGTTAGGAACAAAGTTCTTACAACTTGATTATATCAGGGGAAAACCGGTTGAGAAATCAGTTGAAGAATATATAGATGTGAGGAAGAGTATAAACACCACACAATCACCACCACAAATTCAACCGGACGGAGAAAGATTCGCCATTGAGTTGTTAAAGAGCACCGTCTACGGCGGTCTCACTGAGACCATCACCAGCCTCGGCGTTGTATCATCTGCTTCTGCCTCTGGTTCCTCCACCATGAATATATTGGCTCTTGCTGTCGCAAATTTGGCCGGTGGGCTCATCGTCCTCGCTCAAAACTTTCAAGATCTAAGAAACAGTTCAGATCAAGAGAAAGATAGGTACGAGGAATTGTTAGGGAGACGTACTAAATCCCGGATACATATCTTAGTAGCGGTCATGTCTTACATTTTCTTCGGCCTAATTCCTCCGTTAGTTTACGCATTTTCCTTCTACGAAACCGGAATCAAGAACTACAAGCTCATCTCGGTTTTCTTGGGTTCTCTGGTTTGCGTAATTTTGCTCGGTTCGATCAAGGTCTATGTCCGAAAACCAACCAATTCATGTGGATCGACTAAAGCTTATCTCAAATCTGCGGCTTATTATACGTCTATTGTTGTTGCTTCTTGCGGAATCTCATACGTTGTCGGAGATATTATGGGAGAGTATATCGAGAAGCTCAGTTTGGTTGGTTTAGACCAGATCAGTATAACTTCACCATGTTATGGAATTAAACCCGAGGAGTGCCGGTTTACTTCCTTTTAA

Protein Analysis

550

Amino Acids

61.05

Weight (kDa)

4.54

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 169
AccB7I CCANNNNNTGG 1 cut(s) 1613
AccI GTMKAC 1 cut(s) 1053
AciI CCGC 6 cut(s) 129, 152, 1059, 1283, 1484, 1518
AclWI GGATC 5 cut(s) 138, 223, 272, 726, 1465
AcoI YGGCCR 1 cut(s) 1158
AcsI RAATTY 5 cut(s) 77, 137, 601, 1002, 1153
AcyI GRCGYC 1 cut(s) 170
AfaI GTAC 6 cut(s) 253, 288, 298, 878, 1232, 1255
AfiI CCNNNNNNNGG 1 cut(s) 1613
AflIII ACRYGT 1 cut(s) 653
AgeI ACCGGT 4 cut(s) 311, 335, 736, 931
AgsI TTSAA 7 cut(s) 46, 318, 342, 746, 950, 1007, 1193
AjuI GAANNNNNNNTTGG 2 cut(s) 1556, 1588
AluBI AGCT 9 cut(s) 102, 224, 378, 532, 631, 645, 1369, 1469, 1567
AluI AGCT 9 cut(s) 102, 224, 378, 532, 631, 645, 1369, 1469, 1567
Alw21I GWGCWC 2 cut(s) 380, 1049
Alw26I GTCTC 4 cut(s) 800, 1064, 1067, 1243
AlwI GGATC 5 cut(s) 138, 223, 272, 726, 1465
Ama87I CYCGRG 2 cut(s) 132, 1625
AoxI GGCC 2 cut(s) 1158, 1306
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 5 cut(s) 77, 137, 601, 1002, 1153
AsiGI ACCGGT 4 cut(s) 311, 335, 736, 931
Asp700I GAANNNNTTC 1 cut(s) 1207
AspLEI GCGC 1 cut(s) 172
AsuC2I CCSGG 1 cut(s) 1264
AsuHPI GGTGA 5 cut(s) 652, 774, 984, 1069, 1596
AvaI CYCGRG 2 cut(s) 132, 1625
BanI GGYRCC 1 cut(s) 169
BanII GRGCYC 2 cut(s) 380, 1170
Bbv12I GWGCWC 2 cut(s) 380, 1049
BbvI GCAGC 1 cut(s) 167
BccI CCATC 3 cut(s) 206, 769, 1082
BceAI ACGGC 2 cut(s) 177, 1072
BciVI GTATCC 1 cut(s) 1260
BclI TGATCA 1 cut(s) 823
BcnI CCSGG 1 cut(s) 1264
BcoDI GTCTC 4 cut(s) 800, 1064, 1067, 1243
BfaI CTAG 3 cut(s) 497, 596, 642
BfmI CTRYAG 2 cut(s) 103, 646
BfoI RGCGCY 1 cut(s) 173
BfuI GTATCC 1 cut(s) 1260
BglII AGATCT 1 cut(s) 1195
BisI GCNGC 3 cut(s) 153, 156, 1485
BlsI GCNGC 3 cut(s) 154, 157, 1486
BmcAI AGTACT 3 cut(s) 288, 298, 878
Bme1390I CCNGG 1 cut(s) 1264
BmeT110I CYCGRG 2 cut(s) 132, 1625
BmiI GGNNCC 3 cut(s) 165, 171, 1117
BmrFI CCNGG 1 cut(s) 1264
BmsI GCATC 1 cut(s) 61
BplI GAGNNNNNCTC 2 cut(s) 362, 394
BpuEI CTTGAG 5 cut(s) 116, 204, 210, 311, 662
BpuMI CCSGG 1 cut(s) 1264
BsaBI GATNNNNATC 3 cut(s) 276, 469, 1271
BsaHI GRCGYC 1 cut(s) 170
BsaI GGTCTC 2 cut(s) 1064, 1067
BsaJI CCNNGG 3 cut(s) 147, 1084, 1626
BsaWI WCCGGW 8 cut(s) 311, 335, 736, 748, 885, 931, 1009, 1349
BsaXI ACNNNNNCTCC 2 cut(s) 1622, 1652
Bsc4I CCNNNNNNNGG 1 cut(s) 1613
Bse118I RCCGGY 7 cut(s) 172, 311, 335, 736, 931, 1160, 1635
Bse1I ACTGG 2 cut(s) 20, 785
Bse8I GATNNNNATC 3 cut(s) 276, 469, 1271
BseDI CCNNGG 3 cut(s) 147, 1084, 1626
BseGI GGATG 3 cut(s) 550, 826, 882
BseJI GATNNNNATC 3 cut(s) 276, 469, 1271
BseLI CCNNNNNNNGG 1 cut(s) 1613
BseMII CTCAG 3 cut(s) 795, 1059, 1582
BseNI ACTGG 2 cut(s) 20, 785
BseRI GAGGAG 2 cut(s) 785, 1643
BseXI GCAGC 1 cut(s) 167
BshFI GGCC 2 cut(s) 1160, 1308
BshNI GGYRCC 1 cut(s) 169
BshTI ACCGGT 4 cut(s) 311, 335, 736, 931
BsiHKAI GWGCWC 2 cut(s) 380, 1049
BsiHKCI CYCGRG 2 cut(s) 132, 1625
BslFI GGGAC 2 cut(s) 526, 785
BslI CCNNNNNNNGG 1 cut(s) 1613
BsmAI GTCTC 4 cut(s) 800, 1064, 1067, 1243
BsmBI CGTCTC 1 cut(s) 1243
BsmFI GGGAC 2 cut(s) 526, 785
BsnI GGCC 2 cut(s) 1160, 1308
Bso31I GGTCTC 2 cut(s) 1064, 1067
BsoBI CYCGRG 2 cut(s) 132, 1625
Bsp1286I GDGCHC 3 cut(s) 380, 1049, 1170
BspACI CCGC 6 cut(s) 129, 152, 1059, 1283, 1484, 1518
BspANI GGCC 2 cut(s) 1160, 1308
BspCNI CTCAG 3 cut(s) 796, 1060, 1581
BspLI GGNNCC 3 cut(s) 165, 171, 1117
BspPI GGATC 5 cut(s) 138, 223, 272, 726, 1465
BspT107I GGYRCC 1 cut(s) 169
BspTNI GGTCTC 2 cut(s) 1064, 1067
BsrFI RCCGGY 7 cut(s) 172, 311, 335, 736, 931, 1160, 1635
BsrI ACTGG 2 cut(s) 20, 785
BssAI RCCGGY 7 cut(s) 172, 311, 335, 736, 931, 1160, 1635
BssECI CCNNGG 3 cut(s) 147, 1084, 1626
BssNI GRCGYC 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 147
Bst4CI ACNGT 4 cut(s) 301, 638, 1051, 1208
Bst6I CTCTTC 5 cut(s) 195, 435, 477, 576, 965
BstACI GRCGYC 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 5 cut(s) 804, 1068, 1199, 1276, 1568
BstF5I GGATG 3 cut(s) 550, 826, 882
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstMAI GTCTC 4 cut(s) 800, 1064, 1067, 1243
BstMWI GCNNNNNNNGC 2 cut(s) 161, 1157
BstNSI RCATGY 1 cut(s) 657
BstSCI CCNGG 1 cut(s) 1262
BstSFI CTRYAG 2 cut(s) 103, 646
BstV1I GCAGC 1 cut(s) 167
BstX2I RGATCY 4 cut(s) 215, 277, 718, 1195
BstXI CCANNNNNNTGG 1 cut(s) 670
BstYI RGATCY 4 cut(s) 215, 277, 718, 1195
BsuI GTATCC 1 cut(s) 1260
BsuRI GGCC 2 cut(s) 1160, 1308
BtgZI GCGATG 1 cut(s) 243
BtsCI GGATG 3 cut(s) 550, 826, 882
BtsIMutI CAGTG 1 cut(s) 1065
Cac8I GCNNGC 1 cut(s) 609
CfoI GCGC 1 cut(s) 172
Cfr10I RCCGGY 7 cut(s) 172, 311, 335, 736, 931, 1160, 1635
Csp6I GTAC 6 cut(s) 252, 287, 297, 877, 1231, 1254
CspAI ACCGGT 4 cut(s) 311, 335, 736, 931
CspCI CAANNNNNGTGG 2 cut(s) 1435, 1470
CviAII CATG 6 cut(s) 26, 654, 1126, 1288, 1452, 1608
CviQI GTAC 6 cut(s) 252, 287, 297, 877, 1231, 1254
DdeI CTNAG 5 cut(s) 804, 1068, 1199, 1276, 1568
DinI GGCGCC 1 cut(s) 171
EaeI YGGCCR 1 cut(s) 1158
Eam1104I CTCTTC 5 cut(s) 195, 435, 477, 576, 965
EarI CTCTTC 5 cut(s) 195, 435, 477, 576, 965
Ecl136II GAGCTC 1 cut(s) 378
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 2 cut(s) 380, 1170
Eco31I GGTCTC 2 cut(s) 1064, 1067
Eco53kI GAGCTC 1 cut(s) 378
Eco88I CYCGRG 2 cut(s) 132, 1625
EcoICRI GAGCTC 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 2 cut(s) 380, 1170
EgeI GGCGCC 1 cut(s) 171
EheI GGCGCC 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 1243
FaeI CATG 6 cut(s) 29, 657, 1129, 1291, 1455, 1611
FaqI GGGAC 2 cut(s) 526, 785
FatI CATG 6 cut(s) 25, 653, 1125, 1287, 1451, 1607
FauI CCCGC 1 cut(s) 136
FbaI TGATCA 1 cut(s) 823
FblI GTMKAC 1 cut(s) 1053
Fnu4HI GCNGC 3 cut(s) 153, 156, 1485
FokI GGATG 3 cut(s) 557, 833, 869
FriOI GRGCYC 2 cut(s) 380, 1170
Fsp4HI GCNGC 3 cut(s) 153, 156, 1485
FspBI CTAG 3 cut(s) 497, 596, 642
GlaI GCGC 1 cut(s) 171
GluI GCNGC 3 cut(s) 153, 156, 1485
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 2 cut(s) 1160, 1308
HhaI GCGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 6 cut(s) 29, 657, 1129, 1291, 1455, 1611
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 1467
HphI GGTGA 5 cut(s) 652, 774, 984, 1069, 1596
Hpy166II GTNNAC 4 cut(s) 178, 1054, 1327, 1641
Hpy188III TCNNGA 8 cut(s) 95, 679, 716, 827, 1193, 1217, 1357, 1561
Hpy8I GTNNAC 4 cut(s) 178, 1054, 1327, 1641
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 40, 1348
HpyCH4III ACNGT 4 cut(s) 301, 638, 1051, 1208
HpyCH4IV ACGT 4 cut(s) 702, 1252, 1496, 1530
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 1157
HpyF3I CTNAG 5 cut(s) 804, 1068, 1199, 1276, 1568
HpySE526I ACGT 4 cut(s) 702, 1252, 1496, 1530
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 6 cut(s) 29, 657, 1129, 1291, 1455, 1611
HspAI GCGC 1 cut(s) 170
KasI GGCGCC 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 823
LmnI GCTCC 2 cut(s) 169, 383
Lsp1109I GCAGC 1 cut(s) 167
LweI GCATC 1 cut(s) 61
MaeI CTAG 3 cut(s) 497, 596, 642
MaeII ACGT 4 cut(s) 702, 1252, 1496, 1530
MaeIII GTNAC 2 cut(s) 28, 230
MflI RGATCY 4 cut(s) 215, 277, 718, 1195
MhlI GDGCHC 3 cut(s) 380, 1049, 1170
Mly113I GGCGCC 1 cut(s) 170
MlyI GAGTC 2 cut(s) 380, 802
MmeI TCCRAC 2 cut(s) 177, 1516
MroXI GAANNNNTTC 1 cut(s) 1207
MseI TTAA 5 cut(s) 705, 789, 1040, 1620, 1651
MspR9I CCNGG 1 cut(s) 1264
MwoI GCNNNNNNNGC 2 cut(s) 161, 1157
NarI GGCGCC 1 cut(s) 170
NciI CCSGG 1 cut(s) 1264
NlaIII CATG 6 cut(s) 29, 657, 1129, 1291, 1455, 1611
NlaIV GGNNCC 3 cut(s) 165, 171, 1117
NmeAIII GCCGAG 1 cut(s) 1065
NspI RCATGY 1 cut(s) 657
PciI ACATGT 1 cut(s) 653
PcsI WCGNNNNNNNCGW 1 cut(s) 759
PdmI GAANNNNTTC 1 cut(s) 1207
PfeI GAWTC 8 cut(s) 272, 326, 476, 575, 779, 1023, 1353, 1521
PflMI CCANNNNNTGG 1 cut(s) 1613
PfoI TCCNGGA 1 cut(s) 1262
PinAI ACCGGT 4 cut(s) 311, 335, 736, 931
PkrI GCNGC 3 cut(s) 154, 157, 1486
PleI GAGTC 2 cut(s) 379, 802
PluTI GGCGCC 1 cut(s) 173
PpsI GAGTC 2 cut(s) 379, 802
PscI ACATGT 1 cut(s) 653
Psp124BI GAGCTC 1 cut(s) 380
PspN4I GGNNCC 3 cut(s) 165, 171, 1117
PsrI GAACNNNNNNTAC 2 cut(s) 835, 867
PsuI RGATCY 4 cut(s) 215, 277, 718, 1195
RsaI GTAC 6 cut(s) 253, 288, 298, 878, 1232, 1255
RsaNI GTAC 6 cut(s) 252, 287, 297, 877, 1231, 1254
SacI GAGCTC 1 cut(s) 380
SaqAI TTAA 5 cut(s) 705, 789, 1040, 1620, 1651
SatI GCNGC 3 cut(s) 153, 156, 1485
ScaI AGTACT 3 cut(s) 288, 298, 878
SchI GAGTC 2 cut(s) 380, 802
ScrFI CCNGG 1 cut(s) 1264
SduI GDGCHC 3 cut(s) 380, 1049, 1170
SfaNI GCATC 1 cut(s) 61
SfcI CTRYAG 2 cut(s) 103, 646
SfoI GGCGCC 1 cut(s) 171
SmlI CTYRAG 5 cut(s) 95, 219, 225, 290, 677
SmoI CTYRAG 5 cut(s) 95, 219, 225, 290, 677
SsiI CCGC 6 cut(s) 129, 152, 1059, 1283, 1484, 1518
SspDI GGCGCC 1 cut(s) 169
SspMI CTAG 3 cut(s) 497, 596, 642
SstI GAGCTC 1 cut(s) 380
StyD4I CCNGG 1 cut(s) 1262
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 4 cut(s) 301, 638, 1051, 1208
TaiI ACGT 4 cut(s) 705, 1255, 1499, 1533
TaqI TCGA 5 cut(s) 142, 374, 1418, 1460, 1560
TatI WGTACW 4 cut(s) 251, 286, 296, 876
TauI GCSGC 2 cut(s) 155, 1487
TfiI GAWTC 8 cut(s) 272, 326, 476, 575, 779, 1023, 1353, 1521
Tru1I TTAA 5 cut(s) 705, 789, 1040, 1620, 1651
Tru9I TTAA 5 cut(s) 705, 789, 1040, 1620, 1651
TscAI CASTG 1 cut(s) 1072
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 6 cut(s) 14, 561, 699, 871, 1142, 1440
TspGWI ACGGA 4 cut(s) 66, 430, 1029, 1308
TspRI CASTG 1 cut(s) 1072
Van91I CCANNNNNTGG 1 cut(s) 1613
XapI RAATTY 5 cut(s) 77, 137, 601, 1002, 1153
XceI RCATGY 1 cut(s) 657
XcmI CCANNNNNNNNNTGG 1 cut(s) 1132
XmiI GTMKAC 1 cut(s) 1053
XmnI GAANNNNTTC 1 cut(s) 1207
XspI CTAG 3 cut(s) 497, 596, 642
ZrmI AGTACT 3 cut(s) 288, 298, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.