FvH4_2g18570

Membrane protein of ER

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
15917555 .. 15922021
4467 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18570.t2

Sequence Viewer

Length: 1686 bp
ATGGAAGCCACATTAGAGCAGTGGGAGGAGAATGAGGAAGTGGGCATTGACTTGCGGGGAAGGCTGCCTCGACAAAACGGCAACACGATCACTCATGGTGAAGATGGTGTCTACACCTCACAGAGTTCAAGTGAAGCTGAATCTAGCAGAGTAGAGGAGGAAGAAGGAGATAAGGGGAGCCCCAGAAATGGTTTTCACATGGTCTCTGCCAAAAATGGAGGTACTGAATCCCCATATGGGATCTCTGGATTCAATGGTGAAGATGTTGATTTTGTTATTTCCAAGAAAAGTTCTGGGAATGAAATAGTTGCTAGTGAGGTAGAGAGTCTAAGCTTTGAAAAGAGTGTTGATTCCAAGCATCAAGATGAGGACAATAATAAGTTGAGGGATGAAGGGTTACCTGGTTCTGGTTCGTTACCTTCCGAGCAATCCATTGAGCAGAATGGACTCAATGCTTCCCTGGAAAATGGAAAGGCTGAAAATGGGAAAGTTAAGTTGAGAGATATAAGAGAGCAAGAAGTGTCTGAATTGTACCTTGAGAGGGTATATGAGAAGCAGGCTGCACATGAATTCTACTGTCCTAATTGCAATTCTTGCATCACCAAGGTTCTTATCCGAAACAGAGAATTGGAGAATAGAGCTGAAATTATACCACTTCCGGAGCCAATTGATACAGTTAGATGCACTTCGTGTTTTAGTTTCCTCATTCCTGCAGGCAATTGGTTCTTTCCCAAAGCAGTAGCAAAAGAAGAGAAAACTCAGACAAATCAAGGAATCAATATTGAAGACAATGATGGAGCTTCTGTTCCATCACATGAATCTTATGGACGGCTGCAAGATCAAAATAGTCAAGTTGTAGCGGTAGTTAAGGGCTCATTGCCTATTGAGTCTGCTGGACCATCACGAAATAATCTTGACAGCAGAATTCGAGTTGAATTGCCTGTTTCACTACAAGACTCAAATGGAACAATGTACGATAAAAGATCTCCAACGCCTGCTCAGTCAGTTGGAATTAGTCAAGTTGTATCAGTAGTTAAAGCTCCAGAGCCCTATCTAGAGAGTAGAATTGGAGTTGAATTGCCCGTTTCACTACAAGACTCAAATGGAACAATGTATGATAAAAGATCTCCAATGCCTGCTCAGTCAGTTGGAACCAGTCAAGCTGCATCAGTAGATAAAGCTCCAGAGCCCTATCTCGACAGTAGAGTTGGAGTTGAATTGCCAGTTTCACCACAGGAGTCGAATGGTACATTATATGATCAAAATCCTCCAATGCCTGCTCAGTCAGTTGGAGTTAGTGAAGCTGCACTGATTGATAAAGCTCCAGTCCCTGGTGACTTTGTTGAAGCTAGCATTAATGGAGTTCAGGTTCCAGTTCCATCATATGACTCAAATGGAACATTACACAATCAAAAATCTCCATTGCCTGGTCAGTCGGTTGTTAGCATAACTGTTACAACTCAGTCACCAGCACCTGAAATAGATGATGCAGGGTCAGCAGAATCAAAACCTCGTGAGAGCACAACAATCATTGTTAGATCAGATGGACCACCAATAATATCTGAACCACATGATGCAAAAACCCTTGATATCCTCAAAAGCATCGTGTATGGCGGTTTAACTGAAGTACTTGCCAGCTTAAGCATTGTGACATCTGCAGCTAGTGCTGGTACTACCACAGATTAG

Protein Analysis

562

Amino Acids

60.24

Weight (kDa)

4.59

Isoelectric Point (pI)

61.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VIT1 PF01988 613 - 699 2e-06 VIT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1331, 1427
AccI GTMKAC 1 cut(s) 111
AccIII TCCGGA 1 cut(s) 658
AciI CCGC 3 cut(s) 55, 860, 1614
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 2 cut(s) 569, 924
AcuI CTGAAG 1 cut(s) 1644
AdeI CACNNNGTG 1 cut(s) 690
AfaI GTAC 6 cut(s) 223, 533, 974, 1249, 1629, 1672
AfiI CCNNNNNNNGG 6 cut(s) 188, 237, 407, 541, 1331, 1427
AflII CTTAAG 1 cut(s) 1639
AgsI TTSAA 8 cut(s) 129, 253, 338, 785, 935, 1076, 1217, 1346
AjnI CCWGG 4 cut(s) 400, 459, 1330, 1426
AloI GAACNNNNNNTCC 4 cut(s) 789, 821, 1353, 1385
Alw21I GWGCWC 1 cut(s) 1523
Alw26I GTCTC 1 cut(s) 208
AlwI GGATC 1 cut(s) 248
AlwNI CAGNNNCTG 2 cut(s) 1331, 1475
Aor13HI TCCGGA 1 cut(s) 658
ApeKI GCWGC 6 cut(s) 64, 560, 832, 1163, 1304, 1658
ApoI RAATTY 2 cut(s) 569, 924
AseI ATTAAT 1 cut(s) 1356
AspS9I GGNCC 2 cut(s) 896, 1547
AsuHPI GGTGA 6 cut(s) 110, 269, 592, 1221, 1346, 1458
AsuNHI GCTAGC 1 cut(s) 1349
AvaII GGWCC 2 cut(s) 896, 1547
BanII GRGCYC 4 cut(s) 182, 875, 1050, 1191
BauI CACGAG 1 cut(s) 1512
BbsI GAAGAC 1 cut(s) 792
Bbv12I GWGCWC 1 cut(s) 1523
BbvI GCAGC 6 cut(s) 51, 547, 819, 1150, 1291, 1670
BccI CCATC 6 cut(s) 98, 788, 817, 907, 1387, 1538
BceAI ACGGC 2 cut(s) 94, 845
BciT130I CCWGG 4 cut(s) 402, 461, 1332, 1428
BclI TGATCA 1 cut(s) 1258
BcoDI GTCTC 1 cut(s) 208
BfaI CTAG 5 cut(s) 144, 312, 1055, 1350, 1662
BfmI CTRYAG 2 cut(s) 711, 1656
BfrI CTTAAG 1 cut(s) 1639
BglII AGATCT 2 cut(s) 983, 1124
BisI GCNGC 6 cut(s) 65, 561, 833, 1164, 1305, 1659
BlsI GCNGC 6 cut(s) 66, 562, 834, 1165, 1306, 1660
BmcAI AGTACT 1 cut(s) 1629
Bme1390I CCNGG 4 cut(s) 402, 461, 1332, 1428
Bme18I GGWCC 2 cut(s) 896, 1547
BmgT120I GGNCC 2 cut(s) 896, 1547
BmiI GGNNCC 4 cut(s) 179, 663, 1153, 1371
BmrFI CCNGG 4 cut(s) 402, 461, 1332, 1428
BmsI GCATC 7 cut(s) 367, 606, 671, 1175, 1477, 1564, 1611
BmtI GCTAGC 1 cut(s) 1353
BpiI GAAGAC 1 cut(s) 792
BpmI CTGGAG 3 cut(s) 1026, 1167, 1308
BpuEI CTTGAG 1 cut(s) 557
BsaBI GATNNNNATC 1 cut(s) 1263
BsaI GGTCTC 1 cut(s) 208
BsaJI CCNNGG 3 cut(s) 459, 603, 1330
BsaWI WCCGGW 1 cut(s) 658
BsaXI ACNNNNNCTCC 4 cut(s) 789, 819, 1353, 1383
Bsc4I CCNNNNNNNGG 6 cut(s) 188, 237, 407, 541, 1331, 1427
Bse1I ACTGG 4 cut(s) 1155, 1223, 1325, 1373
Bse3DI GCAATG 2 cut(s) 875, 1421
Bse8I GATNNNNATC 1 cut(s) 1263
BseAI TCCGGA 1 cut(s) 658
BseBI CCWGG 4 cut(s) 402, 461, 1332, 1428
BseDI CCNNGG 3 cut(s) 459, 603, 1330
BseGI GGATG 1 cut(s) 394
BseJI GATNNNNATC 1 cut(s) 1263
BseLI CCNNNNNNNGG 6 cut(s) 188, 237, 407, 541, 1331, 1427
BseMI GCAATG 2 cut(s) 875, 1421
BseMII CTCAG 5 cut(s) 773, 1013, 1154, 1295, 1475
BseNI ACTGG 4 cut(s) 1155, 1223, 1325, 1373
BseRI GAGGAG 2 cut(s) 41, 170
BseXI GCAGC 6 cut(s) 51, 547, 819, 1150, 1291, 1670
BsgI GTGCAG 2 cut(s) 546, 1290
BsiHKAI GWGCWC 1 cut(s) 1523
BsiSI CCGG 1 cut(s) 659
BslFI GGGAC 1 cut(s) 1313
BslI CCNNNNNNNGG 6 cut(s) 188, 237, 407, 541, 1331, 1427
BsmAI GTCTC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 1313
Bso31I GGTCTC 1 cut(s) 208
Bsp1286I GDGCHC 5 cut(s) 182, 875, 1050, 1191, 1523
Bsp13I TCCGGA 1 cut(s) 658
Bsp143I GATC 7 cut(s) 87, 240, 838, 983, 1124, 1258, 1538
BspACI CCGC 3 cut(s) 55, 860, 1614
BspCNI CTCAG 5 cut(s) 772, 1012, 1153, 1294, 1474
BspEI TCCGGA 1 cut(s) 658
BspLI GGNNCC 4 cut(s) 179, 663, 1153, 1371
BspMAI CTGCAG 2 cut(s) 715, 1660
BspOI GCTAGC 1 cut(s) 1353
BspPI GGATC 1 cut(s) 248
BspTI CTTAAG 1 cut(s) 1639
BspTNI GGTCTC 1 cut(s) 208
BsrDI GCAATG 2 cut(s) 875, 1421
BsrI ACTGG 4 cut(s) 1155, 1223, 1325, 1373
BssECI CCNNGG 3 cut(s) 459, 603, 1330
BssMI GATC 7 cut(s) 87, 240, 838, 983, 1124, 1258, 1538
BssSI CACGAG 1 cut(s) 1512
BssT1I CCWWGG 1 cut(s) 603
Bst2BI CACGAG 1 cut(s) 1512
Bst2UI CCWGG 4 cut(s) 402, 461, 1332, 1428
Bst4CI ACNGT 4 cut(s) 578, 676, 1202, 1453
Bst6I CTCTTC 1 cut(s) 744
BstAFI CTTAAG 1 cut(s) 1639
BstAPI GCANNNNNTGC 2 cut(s) 594, 1664
BstC8I GCNNGC 7 cut(s) 558, 715, 996, 1137, 1278, 1351, 1636
BstDEI CTNAG 6 cut(s) 329, 759, 999, 1140, 1281, 1461
BstEII GGTNACC 1 cut(s) 396
BstF5I GGATG 1 cut(s) 394
BstKTI GATC 7 cut(s) 90, 243, 841, 986, 1127, 1261, 1541
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 7 cut(s) 87, 240, 838, 983, 1124, 1258, 1538
BstMWI GCNNNNNNNGC 4 cut(s) 61, 594, 1496, 1664
BstNI CCWGG 4 cut(s) 402, 461, 1332, 1428
BstPI GGTNACC 1 cut(s) 396
BstSCI CCNGG 4 cut(s) 400, 459, 1330, 1426
BstSFI CTRYAG 2 cut(s) 711, 1656
BstV1I GCAGC 6 cut(s) 51, 547, 819, 1150, 1291, 1670
BstV2I GAAGAC 1 cut(s) 792
BstX2I RGATCY 3 cut(s) 240, 983, 1124
BstYI RGATCY 3 cut(s) 240, 983, 1124
BtsCI GGATG 1 cut(s) 394
BtsI GCAGTG 1 cut(s) 26
BtsIMutI CAGTG 2 cut(s) 26, 1307
Cac8I GCNNGC 7 cut(s) 558, 715, 996, 1137, 1278, 1351, 1636
CaiI CAGNNNCTG 2 cut(s) 1331, 1475
Cfr13I GGNCC 2 cut(s) 896, 1547
CsiI ACCWGGT 1 cut(s) 400
Csp6I GTAC 6 cut(s) 222, 532, 973, 1248, 1628, 1671
CviAII CATG 5 cut(s) 95, 199, 566, 815, 1571
CviQI GTAC 6 cut(s) 222, 532, 973, 1248, 1628, 1671
DdeI CTNAG 6 cut(s) 329, 759, 999, 1140, 1281, 1461
DpnI GATC 7 cut(s) 89, 242, 840, 985, 1126, 1260, 1540
DpnII GATC 7 cut(s) 87, 240, 838, 983, 1124, 1258, 1538
DraIII CACNNNGTG 1 cut(s) 690
Eam1104I CTCTTC 1 cut(s) 744
EarI CTCTTC 1 cut(s) 744
Eco130I CCWWGG 1 cut(s) 603
Eco24I GRGCYC 4 cut(s) 182, 875, 1050, 1191
Eco31I GGTCTC 1 cut(s) 208
Eco32I GATATC 1 cut(s) 1591
Eco47I GGWCC 2 cut(s) 896, 1547
Eco57I CTGAAG 1 cut(s) 1644
Eco91I GGTNACC 1 cut(s) 396
EcoO65I GGTNACC 1 cut(s) 396
EcoRI GAATTC 2 cut(s) 569, 924
EcoRII CCWGG 4 cut(s) 400, 459, 1330, 1426
EcoRV GATATC 1 cut(s) 1591
EcoT14I CCWWGG 1 cut(s) 603
EcoT38I GRGCYC 4 cut(s) 182, 875, 1050, 1191
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 5 cut(s) 98, 202, 569, 818, 1574
FaqI GGGAC 1 cut(s) 1313
FatI CATG 5 cut(s) 94, 198, 565, 814, 1570
FauI CCCGC 1 cut(s) 48
FauNDI CATATG 2 cut(s) 235, 1384
FbaI TGATCA 1 cut(s) 1258
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 6 cut(s) 65, 561, 833, 1164, 1305, 1659
FokI GGATG 1 cut(s) 401
FriOI GRGCYC 4 cut(s) 182, 875, 1050, 1191
Fsp4HI GCNGC 6 cut(s) 65, 561, 833, 1164, 1305, 1659
FspBI CTAG 5 cut(s) 144, 312, 1055, 1350, 1662
GluI GCNGC 6 cut(s) 65, 561, 833, 1164, 1305, 1659
GsuI CTGGAG 3 cut(s) 1026, 1167, 1308
HapII CCGG 1 cut(s) 659
Hin1II CATG 5 cut(s) 98, 202, 569, 818, 1574
HindIII AAGCTT 1 cut(s) 331
HpaII CCGG 1 cut(s) 659
HphI GGTGA 6 cut(s) 110, 269, 592, 1221, 1346, 1458
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 6 cut(s) 424, 526, 617, 762, 1543, 1564
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 4 cut(s) 54, 158, 386, 429
HpyCH4III ACNGT 4 cut(s) 578, 676, 1202, 1453
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 594, 1496, 1664
HpyF3I CTNAG 6 cut(s) 329, 759, 999, 1140, 1281, 1461
Hsp92II CATG 5 cut(s) 98, 202, 569, 818, 1574
Kpn2I TCCGGA 1 cut(s) 658
Ksp22I TGATCA 1 cut(s) 1258
Kzo9I GATC 7 cut(s) 87, 240, 838, 983, 1124, 1258, 1538
LmnI GCTCC 6 cut(s) 177, 661, 797, 1045, 1186, 1327
Lsp1109I GCAGC 6 cut(s) 51, 547, 819, 1150, 1291, 1670
LweI GCATC 7 cut(s) 367, 606, 671, 1175, 1477, 1564, 1611
MabI ACCWGGT 1 cut(s) 400
MaeI CTAG 5 cut(s) 144, 312, 1055, 1350, 1662
MaeIII GTNAC 6 cut(s) 396, 414, 1334, 1453, 1464, 1648
MalI GATC 7 cut(s) 89, 242, 840, 985, 1126, 1260, 1540
MboI GATC 7 cut(s) 87, 240, 838, 983, 1124, 1258, 1538
MboII GAAGA 5 cut(s) 113, 173, 272, 761, 797
MfeI CAATTG 2 cut(s) 666, 718
MflI RGATCY 3 cut(s) 240, 983, 1124
MhlI GDGCHC 5 cut(s) 182, 875, 1050, 1191, 1523
MlyI GAGTC 7 cut(s) 334, 441, 896, 950, 1091, 1247, 1382
MmeI TCCRAC 5 cut(s) 988, 1013, 1129, 1189, 1270
MroI TCCGGA 1 cut(s) 658
MseI TTAA 6 cut(s) 492, 867, 1035, 1356, 1619, 1640
MslI CAYNNNNRTG 1 cut(s) 363
MspCI CTTAAG 1 cut(s) 1639
MspI CCGG 1 cut(s) 659
MspR9I CCNGG 4 cut(s) 402, 461, 1332, 1428
MunI CAATTG 2 cut(s) 666, 718
MvaI CCWGG 4 cut(s) 402, 461, 1332, 1428
MwoI GCNNNNNNNGC 4 cut(s) 61, 594, 1496, 1664
NdeI CATATG 2 cut(s) 235, 1384
NdeII GATC 7 cut(s) 87, 240, 838, 983, 1124, 1258, 1538
NheI GCTAGC 1 cut(s) 1349
NlaIII CATG 5 cut(s) 98, 202, 569, 818, 1574
NlaIV GGNNCC 4 cut(s) 179, 663, 1153, 1371
NmuCI GTSAC 3 cut(s) 1334, 1464, 1648
PfeI GAWTC 7 cut(s) 140, 227, 249, 350, 774, 818, 1502
PflMI CCANNNNNTGG 2 cut(s) 1331, 1427
PkrI GCNGC 6 cut(s) 66, 562, 834, 1165, 1306, 1660
PleI GAGTC 7 cut(s) 333, 441, 895, 950, 1091, 1246, 1382
PpsI GAGTC 7 cut(s) 333, 441, 895, 950, 1091, 1246, 1382
PshBI ATTAAT 1 cut(s) 1356
Psp6I CCWGG 4 cut(s) 400, 459, 1330, 1426
PspEI GGTNACC 1 cut(s) 396
PspGI CCWGG 4 cut(s) 400, 459, 1330, 1426
PspN4I GGNNCC 4 cut(s) 179, 663, 1153, 1371
PspPI GGNCC 2 cut(s) 896, 1547
PstI CTGCAG 2 cut(s) 715, 1660
PstNI CAGNNNCTG 2 cut(s) 1331, 1475
PsuI RGATCY 3 cut(s) 240, 983, 1124
RsaI GTAC 6 cut(s) 223, 533, 974, 1249, 1629, 1672
RsaNI GTAC 6 cut(s) 222, 532, 973, 1248, 1628, 1671
RseI CAYNNNNRTG 1 cut(s) 363
SaqAI TTAA 6 cut(s) 492, 867, 1035, 1356, 1619, 1640
SatI GCNGC 6 cut(s) 65, 561, 833, 1164, 1305, 1659
Sau3AI GATC 7 cut(s) 87, 240, 838, 983, 1124, 1258, 1538
Sau96I GGNCC 2 cut(s) 896, 1547
SbfI CCTGCAGG 1 cut(s) 715
ScaI AGTACT 1 cut(s) 1629
SchI GAGTC 7 cut(s) 334, 441, 896, 950, 1091, 1247, 1382
ScrFI CCNGG 4 cut(s) 402, 461, 1332, 1428
SdaI CCTGCAGG 1 cut(s) 715
SduI GDGCHC 5 cut(s) 182, 875, 1050, 1191, 1523
SexAI ACCWGGT 1 cut(s) 400
SfaNI GCATC 7 cut(s) 367, 606, 671, 1175, 1477, 1564, 1611
SfcI CTRYAG 2 cut(s) 711, 1656
SinI GGWCC 2 cut(s) 896, 1547
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 2 cut(s) 536, 1639
SmoI CTYRAG 2 cut(s) 536, 1639
Sse8387I CCTGCAGG 1 cut(s) 715
SsiI CCGC 3 cut(s) 55, 860, 1614
SspI AATATT 1 cut(s) 781
SspMI CTAG 5 cut(s) 144, 312, 1055, 1350, 1662
StyD4I CCNGG 4 cut(s) 400, 459, 1330, 1426
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 4 cut(s) 578, 676, 1202, 1453
TaqI TCGA 4 cut(s) 70, 928, 1197, 1241
TatI WGTACW 1 cut(s) 1627
TfiI GAWTC 7 cut(s) 140, 227, 249, 350, 774, 818, 1502
Tru1I TTAA 6 cut(s) 492, 867, 1035, 1356, 1619, 1640
Tru9I TTAA 6 cut(s) 492, 867, 1035, 1356, 1619, 1640
TscAI CASTG 2 cut(s) 26, 1314
TseFI GTSAC 3 cut(s) 1334, 1464, 1648
TseI GCWGC 6 cut(s) 64, 560, 832, 1163, 1304, 1658
Tsp45I GTSAC 3 cut(s) 1334, 1464, 1648
TspDTI ATGAA 4 cut(s) 315, 405, 582, 831
TspRI CASTG 2 cut(s) 26, 1314
Van91I CCANNNNNTGG 2 cut(s) 1331, 1427
Vha464I CTTAAG 1 cut(s) 1639
VpaK11BI GGWCC 2 cut(s) 896, 1547
VspI ATTAAT 1 cut(s) 1356
XapI RAATTY 2 cut(s) 569, 924
XbaI TCTAGA 1 cut(s) 1054
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 5 cut(s) 144, 312, 1055, 1350, 1662
ZrmI AGTACT 1 cut(s) 1629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.