Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002486

Physical Location & Seq

Genomic Coordinates Forward (+)

22190964 .. 22196572

Gene Structure 5609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012767

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGGAAGCAACACCAGAGCAGTGGGAGGAGAATGAGGAAGTGGGCACGGACTTGCGAGGAAGGCCGCCTCGCCAAAACATCAACGCGATCACTAGTGGTGAAGATGTTGTCCATTCCTCACAGAGTTCAAGTGAAGCTGAATCTCTCAATGCAGAGGAGGAAGAAGAAGCTAAGGGAAGCCCAAGAAATGGTTTTCGCATGGTCTCTGACAAAAATGGAGGTACTGAATCCTCATATGCGTCTGGTTTCAATGGTGGAGAAGTTGAGTATCTTATTTCCAAGAAAATTTCTGGGAGTGAAATAGTGGTTAGTGAAGTAGAGAGTCTAAGCTTTCAAAAGAGTGTTGAAGCCAAGCGTCAAGATGATGACTATATTAAGTCGAAGGATGAAGAGTTACCTGGTTTTGGTGCTTTACCTTCCACGCAGTCCATTGAGCAAAATCAACGCTATGCTTCTCTGAAAAATGGAAAGGCTGAACATGGGAAAGTTAAGTTGAGAGACATAAGTGAGCAAAAAGTGTCTGAACTGTATCTTGAGAGGGTATATGAGAAGCCGGCTGCGCATGAATTCTACTGTCCTAATTGCAATTCTTGCATCACCAAGGTTCTTATCCGTGAGAGAGAATTGGAGAATAGACCTGAAACTCTACCACTTCCTGAGCCAATTGATAAAATTAGATGCACTTCGTGCTTTAGTTTCCTCATTCCTGCAGGCGATTGGTTCTTTCCCAAAGCAGTAGCCAAAGAAGAGGAACATCCGACAGTTCAAGGAATCAATATTGAAGACAATGTTGGAGCTTCTGTTCCATCATATGATTCTAACGGAACAATACAAGATCAAAATAGTCAAGTTGCATCAGTAGGTAAGGGCTCATTGTCTAATGAGTCTATTGGACCGTCAAGAAATAATCTTGACAGCAGAATTGGAGTTGAATTGCCAGTTTCACCACAAAACTCGAAGGAAACATTATATGATAAAAGACCTCCAACGCCTGCTCAGTCAGTTGGAATTAGTCAAGCTGTATCAGTAGATAAAGCTCCAGAGCCCTATCTCGAGAGTAGAGTTGGAGTTGAATTGCCAGTTTCACCACAAGACTCGAATGTAACATTTTATTATCAAAATCCTCCAATGCCTGCTCAGTCAAATGGAGGTGGTGAAGCCGGGTTGATTCGTAAAGCTCCAGAGCCCTATCTCGAGAGTAGAGTTGAAGTTGAATTTCCAGTTTCACCACAAGACTCGAATGAAACATTTAATGATCAAAATCCTCCAATGCCTGCTCAGTCAGTTGGAGTTAGTGAAGCCTTGTTGATTGATAAAGCTCCAGTTCCTGGTGACTTTGTTGAAGCTAGCATTAATGGAGTTCAGGTGCCAGTTCCATCATATGACTCTAATGGAACATTACATGATCAAAAATCTCCATTGCCTGGTCAGTCGGTTGTTAGCATAACTGTTACAACTCAGCCACCAGCACCTGAAATAGATGATGCAGGGCCAGCTGAAACAAAACCTCGTGAGAGCACAACAGTCATTATTGGATCAGGTGGACCAACAATAATATCTGAACCAAGTGATGCCAAAACCTTTGAAATCCTCAAAAGCATCGTATATGGAGGTTTAACTGAAGCAATTGCAAGCTTAAGCATTGTGACATCTGCAGCTAGTGCTGGTACTTCCACATTGAACATTCTAGCTTTGGCCTTGGCAAACTTGCTGGGTGGTCTTTTCATCATTGGACACCACCTTTGGGAACTGAAAGTCGATCAATCAAGAGTTACCTCCGGTGAAACAGATGAACAAGTGGACAGATATGAAGAAGTACTGGGGAAAAGAGAGAATTTCTTTCTTCATGCCTCAGTTGCCATATTATCGTTCCTCATTTTTGGATTAGTACCTCCTTTGGTTTATTGCTTCTCATTCCGTCAGAGCAATGACACGGACCTAAAGCTTGCAGTAGTTGCCGCATCTTCTGTCTTATGCATCATACTTCTTTCAACTGGTAAGGCTTACATCCAGAGGCCACAAAAGTACGTCAAAACTTTGCTGTACTATATCATCATTGGGGTTGGGGCTGCCGGTGTTTCTTACTTAGCAGGCGACTTGATTGACGAACTTATAGAGAAGCTTGGCTGGTTCAACTCAACTGTGTCTGGCACTCTGCCTCTTCCTCAGATGAGTACAGTGAAGCCTGCATGGAAATCCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0010168 GO:0012505 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

735

Amino Acids

79.49

Weight (kDa)

4.7

Isoelectric Point (pI)

54.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	614 - 698	7e-08	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27870 AT4G27870 AT5G24290 AT5G24290
fragaria_vesca	FvH4_2g18570 FvH4_2g18570 FvH4_2g18570 FvH4_2g18570 FvH4_2g18580 FvH4_2g18580
malus_domestica	MD05G1171900.v1.1 MD10G1160200.v1.1
prunus_persica	Prupe.8G199300_v2.0.a1
pyrus_communis	pycom05g15860 pycom10g13830
rosa_chinensis	RchiOBHm_Chr6g0284131 RchiOBHm_Chr6g0284141 RchiOBHm_Chr6g0284151 RchiOBHm_Chr6g0284161
rosa_laevigata	RLG00000012765 RLG00000012766 RLG00000012767
rosa_multiflora	Rmu_sc0003778.1_g000035 Rmu_sc0007496.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184850 Rroxscaffold_7G00184880 Rroxscaffold_7G00184890 Rroxscaffold_7G00184900
rosa_rugosa	Rorug06G0161100 Rorug06G0161200 Rorug06G0161300
rosa_samantha	Rh6AG273900 Rh6AG274000 Rh6BG274600 Rh6BG274700 Rh6CG276100 Rh6CG276200 Rh6DG269000 Rh6DG269100
rosa_wichuraiana	Rw6G023570 Rw6G023580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	561
AccB1I	GGYRCC	1 cut(s)	1366
AccB7I	CCANNNNNTGG	3 cut(s)	188, 1328, 1424
AccII	CGCG	1 cut(s)	86
AciI	CCGC	2 cut(s)	65, 1959
AclWI	GGATC	1 cut(s)	1543
AcsI	RAATTY	4 cut(s)	285, 566, 1214, 1834
AcuI	CTGAAG	1 cut(s)	1641
AdeI	CACNNNGTG	1 cut(s)	687
AfaI	GTAC	7 cut(s)	223, 1669, 1818, 1890, 2027, 2045, 2176
AfiI	CCNNNNNNNGG	5 cut(s)	188, 404, 1328, 1424, 1744
AflII	CTTAAG	1 cut(s)	1636
AhlI	ACTAGT	1 cut(s)	92
AjnI	CCWGG	4 cut(s)	397, 1327, 1423, 2198
AjuI	GAANNNNNNNTTGG	2 cut(s)	774, 806
AloI	GAACNNNNNNTCC	2 cut(s)	786, 818
Alw21I	GWGCWC	1 cut(s)	1520
Alw26I	GTCTC	2 cut(s)	208, 492
AlwI	GGATC	1 cut(s)	1543
AlwNI	CAGNNNCTG	2 cut(s)	1328, 1472
Ama87I	CYCGRG	2 cut(s)	1052, 1193
AoxI	GGCC	4 cut(s)	62, 1490, 1695, 2015
ApeKI	GCWGC	3 cut(s)	557, 1655, 2069
ApoI	RAATTY	4 cut(s)	285, 566, 1214, 1834
ArsI	GACNNNNNNTTYG	2 cut(s)	1725, 1757
AseI	ATTAAT	1 cut(s)	1353
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	4 cut(s)	893, 1490, 1544, 1936
AsuC2I	CCSGG	1 cut(s)	1162
AsuHPI	GGTGA	8 cut(s)	110, 589, 936, 1077, 1166, 1218, 1343, 1793
AsuNHI	GCTAGC	1 cut(s)	1346
AvaI	CYCGRG	2 cut(s)	1052, 1193
AvaII	GGWCC	3 cut(s)	893, 1544, 1936
BaeGI	GKGCMC	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	1366
BanII	GRGCYC	3 cut(s)	872, 1047, 1188
BauI	CACGAG	1 cut(s)	1509
BbsI	GAAGAC	1 cut(s)	789
Bbv12I	GWGCWC	1 cut(s)	1520
BbvI	GCAGC	3 cut(s)	544, 1667, 2056
BccI	CCATC	2 cut(s)	814, 1384
BciT130I	CCWGG	4 cut(s)	399, 1329, 1425, 2200
BclI	TGATCA	2 cut(s)	1255, 1405
BcnI	CCSGG	1 cut(s)	1162
BcoDI	GTCTC	2 cut(s)	208, 492
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	4 cut(s)	93, 1347, 1659, 1688
BfmI	CTRYAG	2 cut(s)	708, 1653
BfrI	CTTAAG	1 cut(s)	1636
BisI	GCNGC	5 cut(s)	65, 558, 1656, 1959, 2070
BlsI	GCNGC	5 cut(s)	66, 559, 1657, 1960, 2071
BmcAI	AGTACT	1 cut(s)	1818
Bme1390I	CCNGG	5 cut(s)	399, 1162, 1329, 1425, 2200
Bme18I	GGWCC	3 cut(s)	893, 1544, 1936
BmeT110I	CYCGRG	2 cut(s)	1052, 1193
BmgT120I	GGNCC	4 cut(s)	893, 1490, 1544, 1936
BmiI	GGNNCC	1 cut(s)	1368
BmrFI	CCNGG	5 cut(s)	399, 1162, 1329, 1425, 2200
BmrI	ACTGGG	1 cut(s)	1829
BmsI	GCATC	8 cut(s)	603, 668, 863, 1474, 1561, 1608, 1970, 1986
BmtI	GCTAGC	1 cut(s)	1350
BmuI	ACTGGG	1 cut(s)	1829
BpiI	GAAGAC	1 cut(s)	789
BpmI	CTGGAG	3 cut(s)	1023, 1164, 1305
Bpu10I	CCTNAGC	2 cut(s)	171, 657
BpuEI	CTTGAG	1 cut(s)	554
BpuMI	CCSGG	1 cut(s)	1162
BsaBI	GATNNNNATC	1 cut(s)	1260
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	2 cut(s)	600, 1698
BsaWI	WCCGGW	1 cut(s)	1778
BsaXI	ACNNNNNCTCC	4 cut(s)	786, 816, 1350, 1380
Bsc4I	CCNNNNNNNGG	5 cut(s)	188, 404, 1328, 1424, 1744
Bse118I	RCCGGY	2 cut(s)	553, 2072
Bse1I	ACTGG	7 cut(s)	938, 1079, 1220, 1322, 1370, 1824, 1999
Bse3DI	GCAATG	2 cut(s)	1418, 1933
Bse8I	GATNNNNATC	1 cut(s)	1260
BseBI	CCWGG	4 cut(s)	399, 1329, 1425, 2200
BseDI	CCNNGG	2 cut(s)	600, 1698
BseGI	GGATG	3 cut(s)	391, 754, 2007
BseJI	GATNNNNATC	1 cut(s)	1260
BseLI	CCNNNNNNNGG	5 cut(s)	188, 404, 1328, 1424, 1744
BseMI	GCAATG	2 cut(s)	1418, 1933
BseMII	CTCAG	7 cut(s)	648, 1010, 1151, 1292, 1472, 1866, 2180
BseNI	ACTGG	7 cut(s)	938, 1079, 1220, 1322, 1370, 1824, 1999
BseRI	GAGGAG	2 cut(s)	41, 170
BseSI	GKGCMC	1 cut(s)	47
BseXI	GCAGC	3 cut(s)	544, 1667, 2056
BseYI	CCCAGC	1 cut(s)	1711
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	4 cut(s)	64, 1492, 1697, 2017
BshNI	GGYRCC	1 cut(s)	1366
BsiHKAI	GWGCWC	1 cut(s)	1520
BsiHKCI	CYCGRG	2 cut(s)	1052, 1193
BsiSI	CCGG	4 cut(s)	554, 1161, 1779, 2073
BslI	CCNNNNNNNGG	5 cut(s)	188, 404, 1328, 1424, 1744
BsmAI	GTCTC	2 cut(s)	208, 492
BsnI	GGCC	4 cut(s)	64, 1492, 1697, 2017
Bso31I	GGTCTC	1 cut(s)	208
BsoBI	CYCGRG	2 cut(s)	1052, 1193
Bsp1286I	GDGCHC	5 cut(s)	47, 872, 1047, 1188, 1520
Bsp143I	GATC	6 cut(s)	87, 835, 1255, 1405, 1535, 1759
BspACI	CCGC	2 cut(s)	65, 1959
BspANI	GGCC	4 cut(s)	64, 1492, 1697, 2017
BspCNI	CTCAG	7 cut(s)	649, 1009, 1150, 1291, 1471, 1865, 2179
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	1 cut(s)	1368
BspMAI	CTGCAG	2 cut(s)	712, 1657
BspOI	GCTAGC	1 cut(s)	1350
BspPI	GGATC	1 cut(s)	1543
BspT107I	GGYRCC	1 cut(s)	1366
BspTI	CTTAAG	1 cut(s)	1636
BspTNI	GGTCTC	1 cut(s)	208
BsrDI	GCAATG	2 cut(s)	1418, 1933
BsrFI	RCCGGY	2 cut(s)	553, 2072
BsrI	ACTGG	7 cut(s)	938, 1079, 1220, 1322, 1370, 1824, 1999
BssAI	RCCGGY	2 cut(s)	553, 2072
BssECI	CCNNGG	2 cut(s)	600, 1698
BssMI	GATC	6 cut(s)	87, 835, 1255, 1405, 1535, 1759
BssSI	CACGAG	1 cut(s)	1509
BssT1I	CCWWGG	2 cut(s)	600, 1698
Bst2BI	CACGAG	1 cut(s)	1509
Bst2UI	CCWGG	4 cut(s)	399, 1329, 1425, 2200
Bst4CI	ACNGT	8 cut(s)	528, 575, 763, 897, 1450, 1525, 2143, 2179
Bst6I	CTCTTC	3 cut(s)	384, 741, 2166
BstAFI	CTTAAG	1 cut(s)	1636
BstAPI	GCANNNNNTGC	4 cut(s)	591, 687, 1661, 1955
BstF5I	GGATG	3 cut(s)	391, 754, 2007
BstFNI	CGCG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	6 cut(s)	90, 838, 1258, 1408, 1538, 1762
BstMAI	GTCTC	2 cut(s)	208, 492
BstMBI	GATC	6 cut(s)	87, 835, 1255, 1405, 1535, 1759
BstMWI	GCNNNNNNNGC	8 cut(s)	61, 559, 591, 687, 1493, 1661, 1856, 1955
BstNI	CCWGG	4 cut(s)	399, 1329, 1425, 2200
BstSCI	CCNGG	5 cut(s)	397, 1160, 1327, 1423, 2198
BstSFI	CTRYAG	2 cut(s)	708, 1653
BstSLI	GKGCMC	1 cut(s)	47
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	3 cut(s)	544, 1667, 2056
BstV2I	GAAGAC	1 cut(s)	789
BstXI	CCANNNNNNTGG	1 cut(s)	21
BsuRI	GGCC	4 cut(s)	64, 1492, 1697, 2017
BtsCI	GGATG	3 cut(s)	391, 754, 2007
BtsI	GCAGTG	1 cut(s)	26
BtsIMutI	CAGTG	2 cut(s)	26, 2184
CaiI	CAGNNNCTG	2 cut(s)	1328, 1472
CfoI	GCGC	1 cut(s)	562
Cfr10I	RCCGGY	2 cut(s)	553, 2072
Cfr13I	GGNCC	4 cut(s)	893, 1490, 1544, 1936
CseI	GACGC	2 cut(s)	228, 344
CsiI	ACCWGGT	1 cut(s)	397
Csp6I	GTAC	7 cut(s)	222, 1668, 1817, 1889, 2026, 2044, 2175
CviAII	CATG	6 cut(s)	199, 479, 563, 1403, 1847, 2190
CviQI	GTAC	7 cut(s)	222, 1668, 1817, 1889, 2026, 2044, 2175
DpnI	GATC	6 cut(s)	89, 837, 1257, 1407, 1537, 1761
DpnII	GATC	6 cut(s)	87, 835, 1255, 1405, 1535, 1759
DraIII	CACNNNGTG	1 cut(s)	687
Eam1104I	CTCTTC	3 cut(s)	384, 741, 2166
EarI	CTCTTC	3 cut(s)	384, 741, 2166
Eco130I	CCWWGG	2 cut(s)	600, 1698
Eco24I	GRGCYC	3 cut(s)	872, 1047, 1188
Eco31I	GGTCTC	1 cut(s)	208
Eco47I	GGWCC	3 cut(s)	893, 1544, 1936
Eco57I	CTGAAG	1 cut(s)	1641
Eco88I	CYCGRG	2 cut(s)	1052, 1193
EcoRI	GAATTC	1 cut(s)	566
EcoRII	CCWGG	4 cut(s)	397, 1327, 1423, 2198
EcoT14I	CCWWGG	2 cut(s)	600, 1698
EcoT22I	ATGCAT	1 cut(s)	1979
EcoT38I	GRGCYC	3 cut(s)	872, 1047, 1188
ErhI	CCWWGG	2 cut(s)	600, 1698
FaeI	CATG	6 cut(s)	202, 482, 566, 1406, 1850, 2193
FatI	CATG	6 cut(s)	198, 478, 562, 1402, 1846, 2189
FauNDI	CATATG	3 cut(s)	235, 811, 1381
FbaI	TGATCA	2 cut(s)	1255, 1405
Fnu4HI	GCNGC	5 cut(s)	65, 558, 1656, 1959, 2070
FokI	GGATG	3 cut(s)	398, 741, 1994
FriOI	GRGCYC	3 cut(s)	872, 1047, 1188
Fsp4HI	GCNGC	5 cut(s)	65, 558, 1656, 1959, 2070
FspBI	CTAG	4 cut(s)	93, 1347, 1659, 1688
FspI	TGCGCA	1 cut(s)	561
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	5 cut(s)	65, 558, 1656, 1959, 2070
GsaI	CCCAGC	1 cut(s)	1715
GsuI	CTGGAG	3 cut(s)	1023, 1164, 1305
HaeIII	GGCC	4 cut(s)	64, 1492, 1697, 2017
HapII	CCGG	4 cut(s)	554, 1161, 1779, 2073
HgaI	GACGC	2 cut(s)	228, 344
HhaI	GCGC	1 cut(s)	562
Hin1II	CATG	6 cut(s)	202, 482, 566, 1406, 1850, 2193
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HindIII	AAGCTT	4 cut(s)	328, 1633, 1943, 2120
HpaII	CCGG	4 cut(s)	554, 1161, 1779, 2073
HphI	GGTGA	8 cut(s)	110, 589, 936, 1077, 1166, 1218, 1343, 1793
Hpy166II	GTNNAC	2 cut(s)	1544, 1801
Hpy188I	TCNGA	7 cut(s)	208, 459, 523, 759, 1561, 1923, 2169
Hpy8I	GTNNAC	2 cut(s)	1544, 1801
HpyAV	CCTTC	4 cut(s)	54, 376, 426, 952
HpyCH4III	ACNGT	8 cut(s)	528, 575, 763, 897, 1450, 1525, 2143, 2179
HpyCH4IV	ACGT	1 cut(s)	2028
HpyF10VI	GCNNNNNNNGC	8 cut(s)	61, 559, 591, 687, 1493, 1661, 1856, 1955
HpySE526I	ACGT	1 cut(s)	2028
Hsp92II	CATG	6 cut(s)	202, 482, 566, 1406, 1850, 2193
HspAI	GCGC	1 cut(s)	560
KroI	GCCGGC	1 cut(s)	553
KroNI	GCCGGC	1 cut(s)	555
Ksp22I	TGATCA	2 cut(s)	1255, 1405
Kzo9I	GATC	6 cut(s)	87, 835, 1255, 1405, 1535, 1759
LmnI	GCTCC	4 cut(s)	794, 1042, 1183, 1324
Lsp1109I	GCAGC	3 cut(s)	544, 1667, 2056
LweI	GCATC	8 cut(s)	603, 668, 863, 1474, 1561, 1608, 1970, 1986
MabI	ACCWGGT	1 cut(s)	397
MaeI	CTAG	4 cut(s)	93, 1347, 1659, 1688
MaeII	ACGT	1 cut(s)	2028
MaeIII	GTNAC	6 cut(s)	393, 1102, 1331, 1450, 1645, 1771
MalI	GATC	6 cut(s)	89, 837, 1257, 1407, 1537, 1761
MboI	GATC	6 cut(s)	87, 835, 1255, 1405, 1535, 1759
MfeI	CAATTG	2 cut(s)	663, 1626
MhlI	GDGCHC	5 cut(s)	47, 872, 1047, 1188, 1520
MlyI	GAGTC	5 cut(s)	331, 893, 1088, 1229, 1379
MmeI	TCCRAC	6 cut(s)	772, 782, 985, 1010, 1045, 1267
Mph1103I	ATGCAT	1 cut(s)	1979
MroNI	GCCGGC	1 cut(s)	553
MseI	TTAA	6 cut(s)	375, 489, 1251, 1353, 1616, 1637
MspA1I	CMGCKG	1 cut(s)	1496
MspCI	CTTAAG	1 cut(s)	1636
MspI	CCGG	4 cut(s)	554, 1161, 1779, 2073
MspR9I	CCNGG	5 cut(s)	399, 1162, 1329, 1425, 2200
MunI	CAATTG	2 cut(s)	663, 1626
MvaI	CCWGG	4 cut(s)	399, 1329, 1425, 2200
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	8 cut(s)	61, 559, 591, 687, 1493, 1661, 1856, 1955
NaeI	GCCGGC	1 cut(s)	555
NciI	CCSGG	1 cut(s)	1162
NdeI	CATATG	3 cut(s)	235, 811, 1381
NdeII	GATC	6 cut(s)	87, 835, 1255, 1405, 1535, 1759
NgoMIV	GCCGGC	1 cut(s)	553
NheI	GCTAGC	1 cut(s)	1346
NlaIII	CATG	6 cut(s)	202, 482, 566, 1406, 1850, 2193
NlaIV	GGNNCC	1 cut(s)	1368
NmuCI	GTSAC	2 cut(s)	1331, 1645
NsbI	TGCGCA	1 cut(s)	561
NsiI	ATGCAT	1 cut(s)	1979
PaeR7I	CTCGAG	2 cut(s)	1052, 1193
PdiI	GCCGGC	1 cut(s)	555
PfeI	GAWTC	5 cut(s)	140, 227, 771, 815, 1168
PflMI	CCANNNNNTGG	3 cut(s)	188, 1328, 1424
PkrI	GCNGC	5 cut(s)	66, 559, 1657, 1960, 2071
PleI	GAGTC	5 cut(s)	330, 892, 1088, 1229, 1379
PpsI	GAGTC	5 cut(s)	330, 892, 1088, 1229, 1379
PshBI	ATTAAT	1 cut(s)	1353
Psp6I	CCWGG	4 cut(s)	397, 1327, 1423, 2198
PspFI	CCCAGC	1 cut(s)	1711
PspGI	CCWGG	4 cut(s)	397, 1327, 1423, 2198
PspN4I	GGNNCC	1 cut(s)	1368
PspPI	GGNCC	4 cut(s)	893, 1490, 1544, 1936
PstI	CTGCAG	2 cut(s)	712, 1657
PstNI	CAGNNNCTG	2 cut(s)	1328, 1472
PvuII	CAGCTG	1 cut(s)	1496
RsaI	GTAC	7 cut(s)	223, 1669, 1818, 1890, 2027, 2045, 2176
RsaNI	GTAC	7 cut(s)	222, 1668, 1817, 1889, 2026, 2044, 2175
SaqAI	TTAA	6 cut(s)	375, 489, 1251, 1353, 1616, 1637
SatI	GCNGC	5 cut(s)	65, 558, 1656, 1959, 2070
Sau3AI	GATC	6 cut(s)	87, 835, 1255, 1405, 1535, 1759
Sau96I	GGNCC	4 cut(s)	893, 1490, 1544, 1936
SbfI	CCTGCAGG	1 cut(s)	712
ScaI	AGTACT	1 cut(s)	1818
SchI	GAGTC	5 cut(s)	331, 893, 1088, 1229, 1379
ScrFI	CCNGG	5 cut(s)	399, 1162, 1329, 1425, 2200
SdaI	CCTGCAGG	1 cut(s)	712
SduI	GDGCHC	5 cut(s)	47, 872, 1047, 1188, 1520
SexAI	ACCWGGT	1 cut(s)	397
SfaNI	GCATC	8 cut(s)	603, 668, 863, 1474, 1561, 1608, 1970, 1986
SfcI	CTRYAG	2 cut(s)	708, 1653
Sfr274I	CTCGAG	2 cut(s)	1052, 1193
SinI	GGWCC	3 cut(s)	893, 1544, 1936
SlaI	CTCGAG	2 cut(s)	1052, 1193
SmlI	CTYRAG	4 cut(s)	533, 1052, 1193, 1636
SmoI	CTYRAG	4 cut(s)	533, 1052, 1193, 1636
SpeI	ACTAGT	1 cut(s)	92
Sse8387I	CCTGCAGG	1 cut(s)	712
SsiI	CCGC	2 cut(s)	65, 1959
SspI	AATATT	1 cut(s)	778
SspMI	CTAG	4 cut(s)	93, 1347, 1659, 1688
StyD4I	CCNGG	5 cut(s)	397, 1160, 1327, 1423, 2198
StyI	CCWWGG	2 cut(s)	600, 1698
TaaI	ACNGT	8 cut(s)	528, 575, 763, 897, 1450, 1525, 2143, 2179
TaiI	ACGT	1 cut(s)	2031
TaqI	TCGA	7 cut(s)	380, 956, 1053, 1097, 1194, 1238, 1758
TatI	WGTACW	3 cut(s)	1816, 2043, 2174
TauI	GCSGC	2 cut(s)	67, 1961
TfiI	GAWTC	5 cut(s)	140, 227, 771, 815, 1168
Tru1I	TTAA	6 cut(s)	375, 489, 1251, 1353, 1616, 1637
Tru9I	TTAA	6 cut(s)	375, 489, 1251, 1353, 1616, 1637
TscAI	CASTG	2 cut(s)	26, 2184
TseFI	GTSAC	2 cut(s)	1331, 1645
TseI	GCWGC	3 cut(s)	557, 1655, 2069
Tsp45I	GTSAC	2 cut(s)	1331, 1645
TspDTI	ATGAA	7 cut(s)	402, 579, 1257, 1714, 1806, 1824, 1835
TspGWI	ACGGA	5 cut(s)	62, 602, 837, 1907, 1949
TspRI	CASTG	2 cut(s)	26, 2184
Van91I	CCANNNNNTGG	3 cut(s)	188, 1328, 1424
Vha464I	CTTAAG	1 cut(s)	1636
VpaK11BI	GGWCC	3 cut(s)	893, 1544, 1936
VspI	ATTAAT	1 cut(s)	1353
XapI	RAATTY	4 cut(s)	285, 566, 1214, 1834
XhoI	CTCGAG	2 cut(s)	1052, 1193
XspI	CTAG	4 cut(s)	93, 1347, 1659, 1688
ZrmI	AGTACT	1 cut(s)	1818
Zsp2I	ATGCAT	1 cut(s)	1979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.