Rh6BG274700

Membrane protein of ER body-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002486
Physical Location & Seq
Reverse (-)
49533189 .. 49536183
2995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG274700.1

Sequence Viewer

Length: 1224 bp
ATGGAAGCACCATTAGAAAGGCTGCCTCGCCAAAACAGCAACACAGACATTACCACCAATAATGGTGGGAATGTTGTCTATTCCTTAGAAGAAGGGAAAAGAAGCCCAGGAAATGGTACTCAATTGCTATACGGAGCTACATCCAATAGTGGACATGGAATAGTGACTGTTGGAGTAGAGAGCGTACGTTTTCAAAAGAGTGTTGAGACCAAGCACCAAGACGAGGATACTAGGAAGTTGAAGGATCTTGGCTCTTCATCCTCCGAGCAGACGGAGCAGTCCCCTGAGGAAAATGGAGTGGCTAAGCATCGAAAAATTAAGTTGACAGATCTTGAAGGGGTGTTTGAGAAGACGGCTGCGCATGAATTCTACTGTCCTAATTGCAATGCTTGCATCACCGAGGTTATAGTCCGCGATAGAGAATCAAAACCTCCTACTCCACCACTTATTGAGGCAGATGAACCCGTCAGATGCACTTCGTGCTTTGGTCTCCTATTTCGTCCAGGCACTTGGATCCCTCGTCCACCAGGGCAAGCAAAACCTACAGAGAGCCCAACAGTTATTCCGATCACACCGGAACCAACGCCGGCAGTGTCTGAATTACCACGAGATGCTAATAAGATGTTAGAAATCCTCAAAAGCATCGTTTACGGTGGTTTAAATGAAGCAATTGCAAGCTTAAGCATTGTGGCATCTGCAGCTAGTACTGATACTGCCACATTGAACATTTTCGTTTTGGCACTGGCAAACTTGCTGGGTGGTCTTTTCGTCATCGGACACAATCTCTGGGACCTGAAAGCTGATCAAGTAGACAGTAAATACAAAGAAGTACTAGGGAACAAAGATAATTTCTTTTTTCATGTCCCGGTTGCCATACTCTCGTTCCTCATTTTCGGGTTAGTACCTCCTTTGGTTTATGGCTTCTCGTTCTCTCAGAGCGACGACAGCGACCTAAAGATTGCAGCAGTTGCAGCATCTTCTATTTTATGCATCATACTTCTCGCAATTGGAAAGGCTTACATCCAGACGCCACCAAAGTACATCAAAACTGTGCTGTACTATATCGTCATAGGGGTTGGCGCCGCCGGTGTTTCTTACTTGGTAGGTGACTTAATTGACAAACTTGTAGAGAAGCTTGGCTGGTTCAACTCAACTGTAGCTGGCTCTCTGCCTCTTCCTCATCTGACTATGAGTACAGTGAAACCTGCATGGGAATCCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VIT1

Protein Analysis

407

Amino Acids

44.07

Weight (kDa)

5.5

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VIT1 PF01988 292 - 369 8.7e-07 VIT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 277
Acc16I TGCGCA 1 cut(s) 360
Acc36I ACCTGC 1 cut(s) 1213
AccB1I GGYRCC 1 cut(s) 1079
AccB7I CCANNNNNTGG 1 cut(s) 113
AccI GTMKAC 1 cut(s) 810
AccII CGCG 1 cut(s) 414
AciI CCGC 2 cut(s) 412, 1083
AclWI GGATC 3 cut(s) 252, 508, 521
AcsI RAATTY 1 cut(s) 365
AcyI GRCGYC 2 cut(s) 1028, 1080
AdeI CACNNNGTG 1 cut(s) 480
AfaI GTAC 8 cut(s) 118, 186, 706, 831, 903, 1040, 1058, 1195
AfiI CCNNNNNNNGG 2 cut(s) 113, 223
AflII CTTAAG 1 cut(s) 679
AgsI TTSAA 5 cut(s) 194, 241, 335, 724, 1147
AjnI CCWGG 4 cut(s) 106, 502, 526, 1217
AluBI AGCT 6 cut(s) 137, 678, 701, 800, 1135, 1160
AluI AGCT 6 cut(s) 137, 678, 701, 800, 1135, 1160
Alw26I GTCTC 2 cut(s) 200, 494
AlwI GGATC 3 cut(s) 252, 508, 521
AlwNI CAGNNNCTG 1 cut(s) 596
ApeKI GCWGC 5 cut(s) 22, 356, 698, 962, 971
ApoI RAATTY 1 cut(s) 365
Asp700I GAANNNNTTC 1 cut(s) 728
AspLEI GCGC 2 cut(s) 361, 1082
AspS9I GGNCC 1 cut(s) 790
AsuC2I CCSGG 1 cut(s) 866
AsuHPI GGTGA 2 cut(s) 388, 1118
AvaII GGWCC 1 cut(s) 790
AxyI CCTNAGG 1 cut(s) 285
BamHI GGATCC 1 cut(s) 513
BanI GGYRCC 1 cut(s) 1079
BanII GRGCYC 1 cut(s) 554
BauI CACGAG 1 cut(s) 606
BbsI GAAGAC 1 cut(s) 356
BbvI GCAGC 5 cut(s) 9, 343, 710, 974, 983
BceAI ACGGC 1 cut(s) 369
BciT130I CCWGG 4 cut(s) 108, 504, 528, 1219
BciVI GTATCC 1 cut(s) 220
BclI TGATCA 1 cut(s) 802
BcnI CCSGG 1 cut(s) 866
BcoDI GTCTC 2 cut(s) 200, 494
BfaI CTAG 3 cut(s) 231, 702, 833
BfmI CTRYAG 3 cut(s) 543, 696, 1155
BfoI RGCGCY 1 cut(s) 1083
BfrI CTTAAG 1 cut(s) 679
BfuAI ACCTGC 1 cut(s) 1213
BfuI GTATCC 1 cut(s) 220
BglII AGATCT 1 cut(s) 328
BisI GCNGC 6 cut(s) 23, 357, 699, 963, 972, 1083
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 6 cut(s) 24, 358, 700, 964, 973, 1084
BmcAI AGTACT 2 cut(s) 706, 831
Bme1390I CCNGG 5 cut(s) 108, 504, 528, 866, 1219
Bme18I GGWCC 1 cut(s) 790
BmgT120I GGNCC 1 cut(s) 790
BmiI GGNNCC 4 cut(s) 515, 579, 791, 1081
BmrFI CCNGG 5 cut(s) 108, 504, 528, 866, 1219
BmsI GCATC 8 cut(s) 316, 402, 461, 601, 651, 701, 983, 999
BpiI GAAGAC 1 cut(s) 356
Bpu1102I GCTNAGC 1 cut(s) 303
BpuMI CCSGG 1 cut(s) 866
BsaHI GRCGYC 2 cut(s) 1028, 1080
BsaI GGTCTC 2 cut(s) 200, 494
BsaJI CCNNGG 3 cut(s) 106, 399, 527
BsaWI WCCGGW 1 cut(s) 574
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 223
Bse118I RCCGGY 2 cut(s) 586, 1085
Bse1I ACTGG 1 cut(s) 747
Bse21I CCTNAGG 1 cut(s) 285
Bse3DI GCAATG 1 cut(s) 391
BseBI CCWGG 4 cut(s) 108, 504, 528, 1219
BseDI CCNNGG 3 cut(s) 106, 399, 527
BseGI GGATG 3 cut(s) 140, 257, 1020
BseLI CCNNNNNNNGG 2 cut(s) 113, 223
BseMI GCAATG 1 cut(s) 391
BseMII CTCAG 2 cut(s) 276, 947
BseNI ACTGG 1 cut(s) 747
BseXI GCAGC 5 cut(s) 9, 343, 710, 974, 983
BseYI CCCAGC 1 cut(s) 754
Bsh1236I CGCG 1 cut(s) 414
BshNI GGYRCC 1 cut(s) 1079
BsiSI CCGG 4 cut(s) 575, 587, 866, 1086
BsiWI CGTACG 1 cut(s) 184
BslFI GGGAC 3 cut(s) 265, 803, 848
BslI CCNNNNNNNGG 2 cut(s) 113, 223
BsmAI GTCTC 2 cut(s) 200, 494
BsmFI GGGAC 3 cut(s) 265, 803, 848
Bso31I GGTCTC 2 cut(s) 200, 494
Bsp1286I GDGCHC 1 cut(s) 554
Bsp143I GATC 5 cut(s) 244, 328, 513, 567, 802
Bsp1720I GCTNAGC 1 cut(s) 303
BspACI CCGC 2 cut(s) 412, 1083
BspCNI CTCAG 2 cut(s) 277, 946
BspFNI CGCG 1 cut(s) 414
BspLI GGNNCC 4 cut(s) 515, 579, 791, 1081
BspMAI CTGCAG 1 cut(s) 700
BspMI ACCTGC 1 cut(s) 1213
BspPI GGATC 3 cut(s) 252, 508, 521
BspQI GCTCTTC 1 cut(s) 259
BspT107I GGYRCC 1 cut(s) 1079
BspTI CTTAAG 1 cut(s) 679
BspTNI GGTCTC 2 cut(s) 200, 494
BsrDI GCAATG 1 cut(s) 391
BsrFI RCCGGY 2 cut(s) 586, 1085
BsrI ACTGG 1 cut(s) 747
BssAI RCCGGY 2 cut(s) 586, 1085
BssECI CCNNGG 3 cut(s) 106, 399, 527
BssMI GATC 5 cut(s) 244, 328, 513, 567, 802
BssNI GRCGYC 2 cut(s) 1028, 1080
BssSI CACGAG 1 cut(s) 606
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 4 cut(s) 108, 504, 528, 1219
Bst4CI ACNGT 8 cut(s) 169, 374, 559, 653, 815, 1051, 1156, 1198
Bst6I CTCTTC 2 cut(s) 259, 1179
BstACI GRCGYC 2 cut(s) 1028, 1080
BstAFI CTTAAG 1 cut(s) 679
BstAPI GCANNNNNTGC 3 cut(s) 390, 480, 968
BstC8I GCNNGC 5 cut(s) 391, 534, 588, 676, 1162
BstDEI CTNAG 4 cut(s) 85, 285, 303, 933
BstF5I GGATG 3 cut(s) 140, 257, 1020
BstFNI CGCG 1 cut(s) 414
BstH2I RGCGCY 1 cut(s) 1083
BstHHI GCGC 2 cut(s) 361, 1082
BstKTI GATC 5 cut(s) 247, 331, 516, 570, 805
BstMAI GTCTC 2 cut(s) 200, 494
BstMBI GATC 5 cut(s) 244, 328, 513, 567, 802
BstMWI GCNNNNNNNGC 8 cut(s) 36, 274, 390, 480, 698, 945, 968, 971
BstNI CCWGG 4 cut(s) 108, 504, 528, 1219
BstSCI CCNGG 5 cut(s) 106, 502, 526, 864, 1217
BstSFI CTRYAG 3 cut(s) 543, 696, 1155
BstUI CGCG 1 cut(s) 414
BstV1I GCAGC 5 cut(s) 9, 343, 710, 974, 983
BstV2I GAAGAC 1 cut(s) 356
BstX2I RGATCY 3 cut(s) 244, 328, 513
BstXI CCANNNNNNTGG 1 cut(s) 510
BstYI RGATCY 3 cut(s) 244, 328, 513
Bsu36I CCTNAGG 1 cut(s) 285
BsuI GTATCC 1 cut(s) 220
BtsCI GGATG 3 cut(s) 140, 257, 1020
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 3 cut(s) 597, 740, 1203
BveI ACCTGC 1 cut(s) 1213
Cac8I GCNNGC 5 cut(s) 391, 534, 588, 676, 1162
CaiI CAGNNNCTG 1 cut(s) 596
CfoI GCGC 2 cut(s) 361, 1082
Cfr10I RCCGGY 2 cut(s) 586, 1085
Cfr13I GGNCC 1 cut(s) 790
CseI GACGC 1 cut(s) 1036
Csp6I GTAC 8 cut(s) 117, 185, 705, 830, 902, 1039, 1057, 1194
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviAII CATG 4 cut(s) 155, 362, 860, 1209
CviQI GTAC 8 cut(s) 117, 185, 705, 830, 902, 1039, 1057, 1194
DdeI CTNAG 4 cut(s) 85, 285, 303, 933
DinI GGCGCC 1 cut(s) 1081
DpnI GATC 5 cut(s) 246, 330, 515, 569, 804
DpnII GATC 5 cut(s) 244, 328, 513, 567, 802
DraI TTTAAA 1 cut(s) 660
DraIII CACNNNGTG 1 cut(s) 480
DrdI GACNNNNNNGTC 1 cut(s) 277
DseDI GACNNNNNNGTC 1 cut(s) 277
Eam1104I CTCTTC 2 cut(s) 259, 1179
EarI CTCTTC 2 cut(s) 259, 1179
Eco24I GRGCYC 1 cut(s) 554
Eco31I GGTCTC 2 cut(s) 200, 494
Eco47I GGWCC 1 cut(s) 790
Eco81I CCTNAGG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 790
EcoRI GAATTC 1 cut(s) 365
EcoRII CCWGG 4 cut(s) 106, 502, 526, 1217
EcoT22I ATGCAT 1 cut(s) 992
EcoT38I GRGCYC 1 cut(s) 554
EgeI GGCGCC 1 cut(s) 1081
EheI GGCGCC 1 cut(s) 1081
FaeI CATG 4 cut(s) 158, 365, 863, 1212
FaqI GGGAC 3 cut(s) 265, 803, 848
FatI CATG 4 cut(s) 154, 361, 859, 1208
FbaI TGATCA 1 cut(s) 802
FblI GTMKAC 1 cut(s) 810
Fnu4HI GCNGC 6 cut(s) 23, 357, 699, 963, 972, 1083
FokI GGATG 3 cut(s) 127, 244, 1007
FriOI GRGCYC 1 cut(s) 554
Fsp4HI GCNGC 6 cut(s) 23, 357, 699, 963, 972, 1083
FspBI CTAG 3 cut(s) 231, 702, 833
FspI TGCGCA 1 cut(s) 360
GlaI GCGC 2 cut(s) 360, 1081
GluI GCNGC 6 cut(s) 23, 357, 699, 963, 972, 1083
GsaI CCCAGC 1 cut(s) 758
HaeII RGCGCY 1 cut(s) 1083
HapII CCGG 4 cut(s) 575, 587, 866, 1086
HgaI GACGC 1 cut(s) 1036
HhaI GCGC 2 cut(s) 361, 1082
Hin1I GRCGYC 2 cut(s) 1028, 1080
Hin1II CATG 4 cut(s) 158, 365, 863, 1212
Hin6I GCGC 2 cut(s) 359, 1080
HinP1I GCGC 2 cut(s) 359, 1080
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HindIII AAGCTT 2 cut(s) 676, 1133
HinfI GANTC 2 cut(s) 422, 1214
HpaII CCGG 4 cut(s) 575, 587, 866, 1086
HphI GGTGA 2 cut(s) 388, 1118
Hpy166II GTNNAC 5 cut(s) 152, 324, 524, 649, 811
Hpy188I TCNGA 7 cut(s) 265, 470, 567, 598, 776, 936, 1185
Hpy188III TCNNGA 2 cut(s) 332, 1024
Hpy8I GTNNAC 5 cut(s) 152, 324, 524, 649, 811
Hpy99I CGWCG 1 cut(s) 944
HpyAV CCTTC 3 cut(s) 86, 235, 329
HpyCH4III ACNGT 8 cut(s) 169, 374, 559, 653, 815, 1051, 1156, 1198
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 9 cut(s) 384, 393, 474, 674, 698, 962, 971, 990, 1208
HpyF10VI GCNNNNNNNGC 8 cut(s) 36, 274, 390, 480, 698, 945, 968, 971
HpyF3I CTNAG 4 cut(s) 85, 285, 303, 933
HpySE526I ACGT 1 cut(s) 187
Hsp92I GRCGYC 2 cut(s) 1028, 1080
Hsp92II CATG 4 cut(s) 158, 365, 863, 1212
HspAI GCGC 2 cut(s) 359, 1080
KasI GGCGCC 1 cut(s) 1079
KroI GCCGGC 1 cut(s) 586
KroNI GCCGGC 1 cut(s) 588
Ksp22I TGATCA 1 cut(s) 802
Kzo9I GATC 5 cut(s) 244, 328, 513, 567, 802
LguI GCTCTTC 1 cut(s) 259
LmnI GCTCC 2 cut(s) 134, 274
Lsp1109I GCAGC 5 cut(s) 9, 343, 710, 974, 983
LweI GCATC 8 cut(s) 316, 402, 461, 601, 651, 701, 983, 999
MaeI CTAG 3 cut(s) 231, 702, 833
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 2 cut(s) 163, 1106
MalI GATC 5 cut(s) 246, 330, 515, 569, 804
MboI GATC 5 cut(s) 244, 328, 513, 567, 802
MboII GAAGA 5 cut(s) 101, 246, 361, 969, 1166
MfeI CAATTG 3 cut(s) 122, 669, 1005
MflI RGATCY 3 cut(s) 244, 328, 513
MhlI GDGCHC 1 cut(s) 554
MluCI AATT 9 cut(s) 122, 315, 365, 379, 599, 669, 847, 1005, 1113
Mly113I GGCGCC 1 cut(s) 1080
MmeI TCCRAC 1 cut(s) 151
Mph1103I ATGCAT 1 cut(s) 992
MroNI GCCGGC 1 cut(s) 586
MroXI GAANNNNTTC 1 cut(s) 728
MseI TTAA 4 cut(s) 318, 659, 680, 1112
MspCI CTTAAG 1 cut(s) 679
MspI CCGG 4 cut(s) 575, 587, 866, 1086
MspR9I CCNGG 5 cut(s) 108, 504, 528, 866, 1219
MunI CAATTG 3 cut(s) 122, 669, 1005
MvaI CCWGG 4 cut(s) 108, 504, 528, 1219
MvnI CGCG 1 cut(s) 414
MwoI GCNNNNNNNGC 8 cut(s) 36, 274, 390, 480, 698, 945, 968, 971
NaeI GCCGGC 1 cut(s) 588
NarI GGCGCC 1 cut(s) 1080
NciI CCSGG 1 cut(s) 866
NdeII GATC 5 cut(s) 244, 328, 513, 567, 802
NgoMIV GCCGGC 1 cut(s) 586
NlaIII CATG 4 cut(s) 158, 365, 863, 1212
NlaIV GGNNCC 4 cut(s) 515, 579, 791, 1081
NmuCI GTSAC 2 cut(s) 163, 1106
NsbI TGCGCA 1 cut(s) 360
NsiI ATGCAT 1 cut(s) 992
PciSI GCTCTTC 1 cut(s) 259
PdiI GCCGGC 1 cut(s) 588
PdmI GAANNNNTTC 1 cut(s) 728
PfeI GAWTC 2 cut(s) 422, 1214
Pfl23II CGTACG 1 cut(s) 184
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 6 cut(s) 24, 358, 700, 964, 973, 1084
PluTI GGCGCC 1 cut(s) 1083
PpuMI RGGWCCY 1 cut(s) 790
Psp5II RGGWCCY 1 cut(s) 790
Psp6I CCWGG 4 cut(s) 106, 502, 526, 1217
PspFI CCCAGC 1 cut(s) 754
PspGI CCWGG 4 cut(s) 106, 502, 526, 1217
PspLI CGTACG 1 cut(s) 184
PspN4I GGNNCC 4 cut(s) 515, 579, 791, 1081
PspPI GGNCC 1 cut(s) 790
PspPPI RGGWCCY 1 cut(s) 790
PstI CTGCAG 1 cut(s) 700
PstNI CAGNNNCTG 1 cut(s) 596
PsuI RGATCY 3 cut(s) 244, 328, 513
RsaI GTAC 8 cut(s) 118, 186, 706, 831, 903, 1040, 1058, 1195
RsaNI GTAC 8 cut(s) 117, 185, 705, 830, 902, 1039, 1057, 1194
SapI GCTCTTC 1 cut(s) 259
SaqAI TTAA 4 cut(s) 318, 659, 680, 1112
SatI GCNGC 6 cut(s) 23, 357, 699, 963, 972, 1083
Sau3AI GATC 5 cut(s) 244, 328, 513, 567, 802
Sau96I GGNCC 1 cut(s) 790
ScaI AGTACT 2 cut(s) 706, 831
ScrFI CCNGG 5 cut(s) 108, 504, 528, 866, 1219
SduI GDGCHC 1 cut(s) 554
SfaNI GCATC 8 cut(s) 316, 402, 461, 601, 651, 701, 983, 999
SfcI CTRYAG 3 cut(s) 543, 696, 1155
SfoI GGCGCC 1 cut(s) 1081
SgrAI CRCCGGYG 1 cut(s) 1085
SinI GGWCC 1 cut(s) 790
SmlI CTYRAG 1 cut(s) 679
SmoI CTYRAG 1 cut(s) 679
Sse9I AATT 9 cut(s) 122, 315, 365, 379, 599, 669, 847, 1005, 1113
SsiI CCGC 2 cut(s) 412, 1083
SspDI GGCGCC 1 cut(s) 1079
SspMI CTAG 3 cut(s) 231, 702, 833
StyD4I CCNGG 5 cut(s) 106, 502, 526, 864, 1217
TaaI ACNGT 8 cut(s) 169, 374, 559, 653, 815, 1051, 1156, 1198
TaiI ACGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 310
TasI AATT 9 cut(s) 122, 315, 365, 379, 599, 669, 847, 1005, 1113
TatI WGTACW 5 cut(s) 704, 829, 1038, 1056, 1193
TauI GCSGC 1 cut(s) 1085
TfiI GAWTC 2 cut(s) 422, 1214
Tru1I TTAA 4 cut(s) 318, 659, 680, 1112
Tru9I TTAA 4 cut(s) 318, 659, 680, 1112
TscAI CASTG 3 cut(s) 597, 747, 1203
TseFI GTSAC 2 cut(s) 163, 1106
TseI GCWGC 5 cut(s) 22, 356, 698, 962, 971
Tsp45I GTSAC 2 cut(s) 163, 1106
TspDTI ATGAA 5 cut(s) 246, 378, 474, 678, 848
TspGWI ACGGA 2 cut(s) 147, 287
TspRI CASTG 3 cut(s) 597, 747, 1203
Van91I CCANNNNNTGG 1 cut(s) 113
Vha464I CTTAAG 1 cut(s) 679
VpaK11BI GGWCC 1 cut(s) 790
XapI RAATTY 1 cut(s) 365
XmiI GTMKAC 1 cut(s) 810
XmnI GAANNNNTTC 1 cut(s) 728
XspI CTAG 3 cut(s) 231, 702, 833
ZrmI AGTACT 2 cut(s) 706, 831
Zsp2I ATGCAT 1 cut(s) 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.