Rh6DG269100

Membrane protein of ER body-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002486
Physical Location & Seq
Reverse (-)
46148676 .. 46177967
29292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG269100.1

Sequence Viewer

Length: 1203 bp
ATGGAAGCACCATTAGAAAGGCTGCCTCGCCAAAACAGCAACACAGACATTACCACCAATAATGGTGGGAATGTTGTCTATTCCTTAGAAGAAGGGAAGAGAAGCCCAAGAAATGGTACTGAATTGCTATACGGAGCTACATCCAATAGTGGACATGGAATAGTGACTGTTGGAGTAGAGAGCGTACGTTTTCAAAAGAGTGTTGGGACCAAGCACCAAGACGAGGATACTAGGAAGTTGAAGGATCTTGGCTCTTCATCCTCCGAGCAGACGGAGCAGTCCCCTGAGGAAAATGGAGTGGCTAAGCATCGAAAAATTAAGTTGAGAGATCTTGAAGGGGTGTTTGAGAAGACGGCTGCGCATGAATTCTACTGTCCTAATTGCAATGCTTGCATCACCGAGGTTATAGTCCGCGATAGAGAATCAAAACCTCCTACTCCACCACTTATTGAGGCAGATGAACCCGCCAGATGCACTTCGTGCTTTGGTCTCCTATTTCGTGCAGGCACTGGGATCTTTCGTCGACCAGGGCAAGTTATTACTGTGATCACACCGGAACAAACGCCGGCAGGGTCTGAATTACCACGAGATGCTAATAAGATGTTAGAAATCCTTAAAAGCATCGTTTACGGTGGTTTAAATGAAGCAATTGCAAGCTTAAGTATTGTGGCATCTGCAGCTAGTACTGATACTGCCACATTGAACATTTTCGTTTTGGCACTGGCAAACTTGCTGGGTGGTCTTTTCGTCATCGGACACAATCTCTGGGACCTGAAAGCTGATCAAGTAGACAGTAAATACAAAGAAGTACTAGGGAACAAAGATAATTTCTTTTTTCATGTCCCGGTTGCCATACTCTCGTTCCTCATTTTCGGGTTAGTACCTCCTTTGGTTTATGGCTTCTCGTTCTCTCAGAGCGACGACAGCAACCTAAAGATTGCAGCAGTTGCAGCATCTTCTATTTTATGCATCATACTTCTCGCAATTGGAAAGGCTTACATCCAGACGCCACCAAAGTACATCAAAACTGTGCTGTACTATATCGTCATAGGGGTTGGCGCCGCCGGTGTTTCTTACTTGGTAGGTGACTTAATTGACAAACTTGTAGAGAAGCTTGGCTGGTTCAACTCAACTGTAGCTGGCTCTCTGCCTCTTCCTCATCTGACTATGAGTACAGTGAAACCTGCATGGGAATCCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VIT1

Protein Analysis

400

Amino Acids

43.36

Weight (kDa)

6.03

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VIT1 PF01988 285 - 362 1.1e-06 VIT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 277
Acc16I TGCGCA 1 cut(s) 360
Acc36I ACCTGC 1 cut(s) 1192
AccB1I GGYRCC 1 cut(s) 1058
AccB7I CCANNNNNTGG 1 cut(s) 113
AccI GTMKAC 2 cut(s) 523, 789
AccII CGCG 1 cut(s) 414
AciI CCGC 3 cut(s) 412, 465, 1062
AclWI GGATC 2 cut(s) 252, 521
AcsI RAATTY 1 cut(s) 365
AcyI GRCGYC 2 cut(s) 1007, 1059
AdeI CACNNNGTG 1 cut(s) 480
AfaI GTAC 8 cut(s) 118, 186, 685, 810, 882, 1019, 1037, 1174
AfiI CCNNNNNNNGG 2 cut(s) 113, 223
AflII CTTAAG 1 cut(s) 658
AgsI TTSAA 5 cut(s) 194, 241, 335, 703, 1126
AjnI CCWGG 2 cut(s) 526, 1196
AluBI AGCT 6 cut(s) 137, 657, 680, 779, 1114, 1139
AluI AGCT 6 cut(s) 137, 657, 680, 779, 1114, 1139
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 2 cut(s) 252, 521
AlwNI CAGNNNCTG 2 cut(s) 509, 575
ApeKI GCWGC 5 cut(s) 22, 356, 677, 941, 950
ApoI RAATTY 1 cut(s) 365
Asp700I GAANNNNTTC 1 cut(s) 707
AspLEI GCGC 2 cut(s) 361, 1061
AspS9I GGNCC 2 cut(s) 207, 769
AsuC2I CCSGG 1 cut(s) 845
AsuHPI GGTGA 2 cut(s) 388, 1097
AvaII GGWCC 2 cut(s) 207, 769
AxyI CCTNAGG 1 cut(s) 285
BanI GGYRCC 1 cut(s) 1058
BauI CACGAG 1 cut(s) 585
BbsI GAAGAC 1 cut(s) 356
BbvI GCAGC 5 cut(s) 9, 343, 689, 953, 962
BceAI ACGGC 1 cut(s) 369
BciT130I CCWGG 2 cut(s) 528, 1198
BciVI GTATCC 1 cut(s) 220
BclI TGATCA 2 cut(s) 546, 781
BcnI CCSGG 1 cut(s) 845
BcoDI GTCTC 1 cut(s) 494
BfaI CTAG 3 cut(s) 231, 681, 812
BfmI CTRYAG 2 cut(s) 675, 1134
BfoI RGCGCY 1 cut(s) 1062
BfrI CTTAAG 1 cut(s) 658
BfuAI ACCTGC 1 cut(s) 1192
BfuI GTATCC 1 cut(s) 220
BglII AGATCT 1 cut(s) 328
BisI GCNGC 6 cut(s) 23, 357, 678, 942, 951, 1062
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 6 cut(s) 24, 358, 679, 943, 952, 1063
BmcAI AGTACT 2 cut(s) 685, 810
Bme1390I CCNGG 3 cut(s) 528, 845, 1198
Bme18I GGWCC 2 cut(s) 207, 769
BmgT120I GGNCC 2 cut(s) 207, 769
BmiI GGNNCC 3 cut(s) 208, 770, 1060
BmrFI CCNGG 3 cut(s) 528, 845, 1198
BmrI ACTGGG 1 cut(s) 519
BmsI GCATC 8 cut(s) 316, 402, 461, 580, 630, 680, 962, 978
BmuI ACTGGG 1 cut(s) 519
BpiI GAAGAC 1 cut(s) 356
Bpu1102I GCTNAGC 1 cut(s) 303
BpuMI CCSGG 1 cut(s) 845
BsaHI GRCGYC 2 cut(s) 1007, 1059
BsaI GGTCTC 1 cut(s) 494
BsaJI CCNNGG 2 cut(s) 399, 527
BsaWI WCCGGW 1 cut(s) 553
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 223
Bse118I RCCGGY 2 cut(s) 565, 1064
Bse1I ACTGG 2 cut(s) 514, 726
Bse21I CCTNAGG 1 cut(s) 285
Bse3DI GCAATG 1 cut(s) 391
BseBI CCWGG 2 cut(s) 528, 1198
BseDI CCNNGG 2 cut(s) 399, 527
BseGI GGATG 3 cut(s) 140, 257, 999
BseLI CCNNNNNNNGG 2 cut(s) 113, 223
BseMI GCAATG 1 cut(s) 391
BseMII CTCAG 2 cut(s) 276, 926
BseNI ACTGG 2 cut(s) 514, 726
BseXI GCAGC 5 cut(s) 9, 343, 689, 953, 962
BseYI CCCAGC 1 cut(s) 733
BsgI GTGCAG 1 cut(s) 522
Bsh1236I CGCG 1 cut(s) 414
BshNI GGYRCC 1 cut(s) 1058
BsiSI CCGG 4 cut(s) 554, 566, 845, 1065
BsiWI CGTACG 1 cut(s) 184
BslFI GGGAC 4 cut(s) 220, 265, 782, 827
BslI CCNNNNNNNGG 2 cut(s) 113, 223
BsmAI GTCTC 1 cut(s) 494
BsmFI GGGAC 4 cut(s) 220, 265, 782, 827
Bso31I GGTCTC 1 cut(s) 494
Bsp143I GATC 5 cut(s) 244, 328, 513, 546, 781
Bsp1720I GCTNAGC 1 cut(s) 303
BspACI CCGC 3 cut(s) 412, 465, 1062
BspCNI CTCAG 2 cut(s) 277, 925
BspFNI CGCG 1 cut(s) 414
BspLI GGNNCC 3 cut(s) 208, 770, 1060
BspMAI CTGCAG 1 cut(s) 679
BspMI ACCTGC 1 cut(s) 1192
BspPI GGATC 2 cut(s) 252, 521
BspQI GCTCTTC 1 cut(s) 259
BspT107I GGYRCC 1 cut(s) 1058
BspTI CTTAAG 1 cut(s) 658
BspTNI GGTCTC 1 cut(s) 494
BsrDI GCAATG 1 cut(s) 391
BsrFI RCCGGY 2 cut(s) 565, 1064
BsrI ACTGG 2 cut(s) 514, 726
BssAI RCCGGY 2 cut(s) 565, 1064
BssECI CCNNGG 2 cut(s) 399, 527
BssMI GATC 5 cut(s) 244, 328, 513, 546, 781
BssNI GRCGYC 2 cut(s) 1007, 1059
BssSI CACGAG 1 cut(s) 585
Bst2BI CACGAG 1 cut(s) 585
Bst2UI CCWGG 2 cut(s) 528, 1198
Bst4CI ACNGT 8 cut(s) 169, 374, 544, 632, 794, 1030, 1135, 1177
Bst6I CTCTTC 3 cut(s) 92, 259, 1158
BstACI GRCGYC 2 cut(s) 1007, 1059
BstAFI CTTAAG 1 cut(s) 658
BstAPI GCANNNNNTGC 3 cut(s) 390, 480, 947
BstC8I GCNNGC 5 cut(s) 391, 505, 567, 655, 1141
BstDEI CTNAG 4 cut(s) 85, 285, 303, 912
BstF5I GGATG 3 cut(s) 140, 257, 999
BstFNI CGCG 1 cut(s) 414
BstH2I RGCGCY 1 cut(s) 1062
BstHHI GCGC 2 cut(s) 361, 1061
BstKTI GATC 5 cut(s) 247, 331, 516, 549, 784
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 5 cut(s) 244, 328, 513, 546, 781
BstMWI GCNNNNNNNGC 8 cut(s) 36, 274, 390, 480, 677, 924, 947, 950
BstNI CCWGG 2 cut(s) 528, 1198
BstSCI CCNGG 3 cut(s) 526, 843, 1196
BstSFI CTRYAG 2 cut(s) 675, 1134
BstUI CGCG 1 cut(s) 414
BstV1I GCAGC 5 cut(s) 9, 343, 689, 953, 962
BstV2I GAAGAC 1 cut(s) 356
BstX2I RGATCY 3 cut(s) 244, 328, 513
BstYI RGATCY 3 cut(s) 244, 328, 513
Bsu36I CCTNAGG 1 cut(s) 285
BsuI GTATCC 1 cut(s) 220
BtsCI GGATG 3 cut(s) 140, 257, 999
BtsIMutI CAGTG 3 cut(s) 507, 719, 1182
BveI ACCTGC 1 cut(s) 1192
Cac8I GCNNGC 5 cut(s) 391, 505, 567, 655, 1141
CaiI CAGNNNCTG 2 cut(s) 509, 575
CfoI GCGC 2 cut(s) 361, 1061
Cfr10I RCCGGY 2 cut(s) 565, 1064
Cfr13I GGNCC 2 cut(s) 207, 769
CseI GACGC 1 cut(s) 1015
Csp6I GTAC 8 cut(s) 117, 185, 684, 809, 881, 1018, 1036, 1173
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviAII CATG 4 cut(s) 155, 362, 839, 1188
CviQI GTAC 8 cut(s) 117, 185, 684, 809, 881, 1018, 1036, 1173
DdeI CTNAG 4 cut(s) 85, 285, 303, 912
DinI GGCGCC 1 cut(s) 1060
DpnI GATC 5 cut(s) 246, 330, 515, 548, 783
DpnII GATC 5 cut(s) 244, 328, 513, 546, 781
DraI TTTAAA 1 cut(s) 639
DraIII CACNNNGTG 1 cut(s) 480
DrdI GACNNNNNNGTC 1 cut(s) 277
DseDI GACNNNNNNGTC 1 cut(s) 277
Eam1104I CTCTTC 3 cut(s) 92, 259, 1158
EarI CTCTTC 3 cut(s) 92, 259, 1158
Eco31I GGTCTC 1 cut(s) 494
Eco47I GGWCC 2 cut(s) 207, 769
Eco81I CCTNAGG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 769
EcoRI GAATTC 1 cut(s) 365
EcoRII CCWGG 2 cut(s) 526, 1196
EcoT22I ATGCAT 1 cut(s) 971
EgeI GGCGCC 1 cut(s) 1060
EheI GGCGCC 1 cut(s) 1060
FaeI CATG 4 cut(s) 158, 365, 842, 1191
FaqI GGGAC 4 cut(s) 220, 265, 782, 827
FatI CATG 4 cut(s) 154, 361, 838, 1187
FauI CCCGC 1 cut(s) 472
FbaI TGATCA 2 cut(s) 546, 781
FblI GTMKAC 2 cut(s) 523, 789
Fnu4HI GCNGC 6 cut(s) 23, 357, 678, 942, 951, 1062
FokI GGATG 3 cut(s) 127, 244, 986
Fsp4HI GCNGC 6 cut(s) 23, 357, 678, 942, 951, 1062
FspBI CTAG 3 cut(s) 231, 681, 812
FspI TGCGCA 1 cut(s) 360
GlaI GCGC 2 cut(s) 360, 1060
GluI GCNGC 6 cut(s) 23, 357, 678, 942, 951, 1062
GsaI CCCAGC 1 cut(s) 737
HaeII RGCGCY 1 cut(s) 1062
HapII CCGG 4 cut(s) 554, 566, 845, 1065
HgaI GACGC 1 cut(s) 1015
HhaI GCGC 2 cut(s) 361, 1061
Hin1I GRCGYC 2 cut(s) 1007, 1059
Hin1II CATG 4 cut(s) 158, 365, 842, 1191
Hin6I GCGC 2 cut(s) 359, 1059
HinP1I GCGC 2 cut(s) 359, 1059
HincII GTYRAC 1 cut(s) 524
HindII GTYRAC 1 cut(s) 524
HindIII AAGCTT 2 cut(s) 655, 1112
HinfI GANTC 2 cut(s) 422, 1193
HpaII CCGG 4 cut(s) 554, 566, 845, 1065
HphI GGTGA 2 cut(s) 388, 1097
Hpy166II GTNNAC 4 cut(s) 152, 524, 628, 790
Hpy188I TCNGA 5 cut(s) 265, 577, 755, 915, 1164
Hpy188III TCNNGA 2 cut(s) 332, 1003
Hpy8I GTNNAC 4 cut(s) 152, 524, 628, 790
Hpy99I CGWCG 2 cut(s) 525, 923
HpyAV CCTTC 3 cut(s) 86, 235, 329
HpyCH4III ACNGT 8 cut(s) 169, 374, 544, 632, 794, 1030, 1135, 1177
HpyCH4IV ACGT 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 8 cut(s) 36, 274, 390, 480, 677, 924, 947, 950
HpyF3I CTNAG 4 cut(s) 85, 285, 303, 912
HpySE526I ACGT 1 cut(s) 187
Hsp92I GRCGYC 2 cut(s) 1007, 1059
Hsp92II CATG 4 cut(s) 158, 365, 842, 1191
HspAI GCGC 2 cut(s) 359, 1059
KasI GGCGCC 1 cut(s) 1058
KroI GCCGGC 1 cut(s) 565
KroNI GCCGGC 1 cut(s) 567
Ksp22I TGATCA 2 cut(s) 546, 781
Kzo9I GATC 5 cut(s) 244, 328, 513, 546, 781
LguI GCTCTTC 1 cut(s) 259
LmnI GCTCC 2 cut(s) 134, 274
Lsp1109I GCAGC 5 cut(s) 9, 343, 689, 953, 962
LweI GCATC 8 cut(s) 316, 402, 461, 580, 630, 680, 962, 978
MaeI CTAG 3 cut(s) 231, 681, 812
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 2 cut(s) 163, 1085
MalI GATC 5 cut(s) 246, 330, 515, 548, 783
MboI GATC 5 cut(s) 244, 328, 513, 546, 781
MboII GAAGA 6 cut(s) 101, 109, 246, 361, 948, 1145
MfeI CAATTG 2 cut(s) 648, 984
MflI RGATCY 3 cut(s) 244, 328, 513
MluCI AATT 9 cut(s) 122, 315, 365, 379, 578, 648, 826, 984, 1092
Mly113I GGCGCC 1 cut(s) 1059
MmeI TCCRAC 1 cut(s) 151
Mph1103I ATGCAT 1 cut(s) 971
MroNI GCCGGC 1 cut(s) 565
MroXI GAANNNNTTC 1 cut(s) 707
MseI TTAA 5 cut(s) 318, 615, 638, 659, 1091
MspCI CTTAAG 1 cut(s) 658
MspI CCGG 4 cut(s) 554, 566, 845, 1065
MspR9I CCNGG 3 cut(s) 528, 845, 1198
MunI CAATTG 2 cut(s) 648, 984
MvaI CCWGG 2 cut(s) 528, 1198
MvnI CGCG 1 cut(s) 414
MwoI GCNNNNNNNGC 8 cut(s) 36, 274, 390, 480, 677, 924, 947, 950
NaeI GCCGGC 1 cut(s) 567
NarI GGCGCC 1 cut(s) 1059
NciI CCSGG 1 cut(s) 845
NdeII GATC 5 cut(s) 244, 328, 513, 546, 781
NgoMIV GCCGGC 1 cut(s) 565
NlaIII CATG 4 cut(s) 158, 365, 842, 1191
NlaIV GGNNCC 3 cut(s) 208, 770, 1060
NmuCI GTSAC 2 cut(s) 163, 1085
NsbI TGCGCA 1 cut(s) 360
NsiI ATGCAT 1 cut(s) 971
PciSI GCTCTTC 1 cut(s) 259
PdiI GCCGGC 1 cut(s) 567
PdmI GAANNNNTTC 1 cut(s) 707
PfeI GAWTC 2 cut(s) 422, 1193
Pfl23II CGTACG 1 cut(s) 184
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 6 cut(s) 24, 358, 679, 943, 952, 1063
PluTI GGCGCC 1 cut(s) 1062
PpuMI RGGWCCY 1 cut(s) 769
Psp5II RGGWCCY 1 cut(s) 769
Psp6I CCWGG 2 cut(s) 526, 1196
PspFI CCCAGC 1 cut(s) 733
PspGI CCWGG 2 cut(s) 526, 1196
PspLI CGTACG 1 cut(s) 184
PspN4I GGNNCC 3 cut(s) 208, 770, 1060
PspPI GGNCC 2 cut(s) 207, 769
PspPPI RGGWCCY 1 cut(s) 769
PstI CTGCAG 1 cut(s) 679
PstNI CAGNNNCTG 2 cut(s) 509, 575
PsuI RGATCY 3 cut(s) 244, 328, 513
RsaI GTAC 8 cut(s) 118, 186, 685, 810, 882, 1019, 1037, 1174
RsaNI GTAC 8 cut(s) 117, 185, 684, 809, 881, 1018, 1036, 1173
SalI GTCGAC 1 cut(s) 522
SapI GCTCTTC 1 cut(s) 259
SaqAI TTAA 5 cut(s) 318, 615, 638, 659, 1091
SatI GCNGC 6 cut(s) 23, 357, 678, 942, 951, 1062
Sau3AI GATC 5 cut(s) 244, 328, 513, 546, 781
Sau96I GGNCC 2 cut(s) 207, 769
ScaI AGTACT 2 cut(s) 685, 810
ScrFI CCNGG 3 cut(s) 528, 845, 1198
SfaNI GCATC 8 cut(s) 316, 402, 461, 580, 630, 680, 962, 978
SfcI CTRYAG 2 cut(s) 675, 1134
SfoI GGCGCC 1 cut(s) 1060
SgrAI CRCCGGYG 1 cut(s) 1064
SinI GGWCC 2 cut(s) 207, 769
SmlI CTYRAG 1 cut(s) 658
SmoI CTYRAG 1 cut(s) 658
Sse9I AATT 9 cut(s) 122, 315, 365, 379, 578, 648, 826, 984, 1092
SsiI CCGC 3 cut(s) 412, 465, 1062
SspDI GGCGCC 1 cut(s) 1058
SspMI CTAG 3 cut(s) 231, 681, 812
StyD4I CCNGG 3 cut(s) 526, 843, 1196
TaaI ACNGT 8 cut(s) 169, 374, 544, 632, 794, 1030, 1135, 1177
TaiI ACGT 1 cut(s) 190
TaqI TCGA 2 cut(s) 310, 523
TasI AATT 9 cut(s) 122, 315, 365, 379, 578, 648, 826, 984, 1092
TatI WGTACW 5 cut(s) 683, 808, 1017, 1035, 1172
TauI GCSGC 1 cut(s) 1064
TfiI GAWTC 2 cut(s) 422, 1193
Tru1I TTAA 5 cut(s) 318, 615, 638, 659, 1091
Tru9I TTAA 5 cut(s) 318, 615, 638, 659, 1091
TscAI CASTG 3 cut(s) 514, 726, 1182
TseFI GTSAC 2 cut(s) 163, 1085
TseI GCWGC 5 cut(s) 22, 356, 677, 941, 950
Tsp45I GTSAC 2 cut(s) 163, 1085
TspDTI ATGAA 5 cut(s) 246, 378, 474, 657, 827
TspGWI ACGGA 2 cut(s) 147, 287
TspRI CASTG 3 cut(s) 514, 726, 1182
Van91I CCANNNNNTGG 1 cut(s) 113
Vha464I CTTAAG 1 cut(s) 658
VpaK11BI GGWCC 2 cut(s) 207, 769
XapI RAATTY 1 cut(s) 365
XmiI GTMKAC 2 cut(s) 523, 789
XmnI GAANNNNTTC 1 cut(s) 707
XspI CTAG 3 cut(s) 231, 681, 812
ZrmI AGTACT 2 cut(s) 685, 810
Zsp2I ATGCAT 1 cut(s) 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.