Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002486

Physical Location & Seq

Genomic Coordinates Forward (+)

24173259 .. 24174835

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00184850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAAGCACCATTAGAAAGGCTGCCTCGCCAAAACAGCAACACAGATATTACCACCAATCATGGTGGGAATGTTGTCTATTCCTTAGAAGAAGGGGAGGGAAGCCCAAGAAATGGTACTCACATGGTCTCTGATAAAAGAGCAGGTACTGAATTGCTATATGGAGCTACATCCAATAGTAGTGGACATGGAATAGTGACTGTTGGAGTAGAGAGCGTACGTTTTCAAAAGAGTGTTGAAACCAAGCACCAAGACGAGGATACTAGGATGCTGAGGGATCTTGGCTCTTCATCCTCCGAGCAGACGGAGCAGTCCCCTGAGGAAAATGGAGTGGCTAAGCATCGAAAAATTAAGTTGAGAGATCTTGAAGGGGTGTTTCAGAAGACGGCTGCGCATGAATTCTATTGTCCTAATTGCAATGCTTGCATCACCGAGGTTATAGTCCGCGATAGAGAATCAAAACCTCCTACTCCACCACTTATTGAGGCAGATGAACCCGTCAGATGCACTTCGTGCTTTGGTCTCCTATTTCGTGCAGCAAAACCTACAGAGAGCACAACAGTTATTACTGTGATCACACCGGAACAAACGCCGGCAGGGTCTGAATTACCACGAGATGCTAATAAGATGTTAGAAATCCTCAAAAGCATCGTTTACGGTGGTTTAAATGAAGCAATTGCAAGCTTAAGCATTGTGGCATCTGCAGCTAGTACTGATACTGCCACATGTAAGTACTGGTTTCTACTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATGAGAAAAATTCAGTCACCGTCCCCAAACTATGCTGCCAAGACCAATTTGATATCCGAACTCTCAAAAGTATCAATGTGATTCCCAAACACTCACTACACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

300

Amino Acids

33.1

Weight (kDa)

5.8

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27870 AT4G27870 AT5G24290 AT5G24290
fragaria_vesca	FvH4_2g18570 FvH4_2g18570 FvH4_2g18570 FvH4_2g18570 FvH4_2g18580 FvH4_2g18580
malus_domestica	MD05G1171900.v1.1 MD10G1160200.v1.1
prunus_persica	Prupe.8G199300_v2.0.a1
pyrus_communis	pycom05g15860 pycom10g13830
rosa_chinensis	RchiOBHm_Chr6g0284131 RchiOBHm_Chr6g0284141 RchiOBHm_Chr6g0284151 RchiOBHm_Chr6g0284161
rosa_laevigata	RLG00000012765 RLG00000012766 RLG00000012767
rosa_multiflora	Rmu_sc0003778.1_g000035 Rmu_sc0007496.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184850 Rroxscaffold_7G00184880 Rroxscaffold_7G00184890 Rroxscaffold_7G00184900
rosa_rugosa	Rorug06G0161100 Rorug06G0161200 Rorug06G0161300
rosa_samantha	Rh6AG273900 Rh6AG274000 Rh6BG274600 Rh6BG274700 Rh6CG276100 Rh6CG276200 Rh6DG269000 Rh6DG269100
rosa_wichuraiana	Rw6G023570 Rw6G023580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	310
Acc16I	TGCGCA	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	134
AccB7I	CCANNNNNTGG	1 cut(s)	113
AccII	CGCG	1 cut(s)	447
AciI	CCGC	1 cut(s)	445
AclWI	GGATC	1 cut(s)	285
AcsI	RAATTY	2 cut(s)	398, 805
AdeI	CACNNNGTG	1 cut(s)	513
AfaI	GTAC	5 cut(s)	118, 148, 219, 712, 734
AfiI	CCNNNNNNNGG	2 cut(s)	113, 256
AflII	CTTAAG	1 cut(s)	685
AflIII	ACRYGT	1 cut(s)	725
AgsI	TTSAA	3 cut(s)	227, 239, 368
AluBI	AGCT	3 cut(s)	167, 684, 707
AluI	AGCT	3 cut(s)	167, 684, 707
Alw21I	GWGCWC	1 cut(s)	557
Alw26I	GTCTC	2 cut(s)	133, 527
AlwI	GGATC	1 cut(s)	285
AlwNI	CAGNNNCTG	2 cut(s)	149, 602
ApeKI	GCWGC	5 cut(s)	22, 389, 536, 704, 831
ApoI	RAATTY	2 cut(s)	398, 805
AspLEI	GCGC	1 cut(s)	394
AsuHPI	GGTGA	2 cut(s)	421, 805
AxyI	CCTNAGG	1 cut(s)	318
BauI	CACGAG	1 cut(s)	612
BbsI	GAAGAC	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	557
BbvCI	CCTCAGC	1 cut(s)	272
BbvI	GCAGC	5 cut(s)	9, 376, 548, 716, 818
BceAI	ACGGC	1 cut(s)	402
BciVI	GTATCC	1 cut(s)	253
BclI	TGATCA	1 cut(s)	573
BcoDI	GTCTC	2 cut(s)	133, 527
BfaI	CTAG	2 cut(s)	264, 708
BfmI	CTRYAG	2 cut(s)	546, 702
BfrI	CTTAAG	1 cut(s)	685
BfuAI	ACCTGC	1 cut(s)	134
BfuI	GTATCC	1 cut(s)	253
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	5 cut(s)	23, 390, 537, 705, 832
BlpI	GCTNAGC	1 cut(s)	336
BlsI	GCNGC	5 cut(s)	24, 391, 538, 706, 833
BmcAI	AGTACT	2 cut(s)	712, 734
BmsI	GCATC	7 cut(s)	258, 349, 435, 494, 607, 657, 707
BpiI	GAAGAC	1 cut(s)	389
Bpu10I	CCTNAGC	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	336
BsaI	GGTCTC	2 cut(s)	133, 527
BsaJI	CCNNGG	1 cut(s)	432
BsaWI	WCCGGW	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 256
Bse118I	RCCGGY	1 cut(s)	592
Bse1I	ACTGG	1 cut(s)	740
Bse21I	CCTNAGG	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	424
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	3 cut(s)	170, 273, 290
BseLI	CCNNNNNNNGG	2 cut(s)	113, 256
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	2 cut(s)	263, 309
BseNI	ACTGG	1 cut(s)	740
BseXI	GCAGC	5 cut(s)	9, 376, 548, 716, 818
BsgI	GTGCAG	1 cut(s)	555
Bsh1236I	CGCG	1 cut(s)	447
BsiHKAI	GWGCWC	1 cut(s)	557
BsiSI	CCGG	2 cut(s)	581, 593
BsiWI	CGTACG	1 cut(s)	217
BslFI	GGGAC	2 cut(s)	298, 803
BslI	CCNNNNNNNGG	2 cut(s)	113, 256
BsmAI	GTCTC	2 cut(s)	133, 527
BsmFI	GGGAC	2 cut(s)	298, 803
Bso31I	GGTCTC	2 cut(s)	133, 527
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp143I	GATC	3 cut(s)	277, 361, 573
Bsp1720I	GCTNAGC	1 cut(s)	336
BspACI	CCGC	1 cut(s)	445
BspCNI	CTCAG	2 cut(s)	264, 310
BspFNI	CGCG	1 cut(s)	447
BspMAI	CTGCAG	1 cut(s)	706
BspMI	ACCTGC	1 cut(s)	134
BspPI	GGATC	1 cut(s)	285
BspQI	GCTCTTC	1 cut(s)	292
BspTI	CTTAAG	1 cut(s)	685
BspTNI	GGTCTC	2 cut(s)	133, 527
BsrDI	GCAATG	1 cut(s)	424
BsrFI	RCCGGY	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	740
BssAI	RCCGGY	1 cut(s)	592
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	3 cut(s)	277, 361, 573
BssSI	CACGAG	1 cut(s)	612
Bst2BI	CACGAG	1 cut(s)	612
Bst4CI	ACNGT	5 cut(s)	202, 562, 571, 659, 817
Bst6I	CTCTTC	1 cut(s)	292
BstAFI	CTTAAG	1 cut(s)	685
BstAPI	GCANNNNNTGC	2 cut(s)	423, 513
BstC8I	GCNNGC	3 cut(s)	424, 594, 682
BstDEI	CTNAG	4 cut(s)	85, 272, 318, 336
BstF5I	GGATG	3 cut(s)	170, 273, 290
BstFNI	CGCG	1 cut(s)	447
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	3 cut(s)	280, 364, 576
BstMAI	GTCTC	2 cut(s)	133, 527
BstMBI	GATC	3 cut(s)	277, 361, 573
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 307, 423, 513, 704
BstNSI	RCATGY	1 cut(s)	729
BstSFI	CTRYAG	2 cut(s)	546, 702
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	5 cut(s)	9, 376, 548, 716, 818
BstV2I	GAAGAC	1 cut(s)	389
BstX2I	RGATCY	2 cut(s)	277, 361
BstYI	RGATCY	2 cut(s)	277, 361
Bsu36I	CCTNAGG	1 cut(s)	318
BsuI	GTATCC	1 cut(s)	253
BtsCI	GGATG	3 cut(s)	170, 273, 290
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	3 cut(s)	424, 594, 682
CaiI	CAGNNNCTG	2 cut(s)	149, 602
CfoI	GCGC	1 cut(s)	394
Cfr10I	RCCGGY	1 cut(s)	592
Csp6I	GTAC	5 cut(s)	117, 147, 218, 711, 733
CspCI	CAANNNNNGTGG	4 cut(s)	46, 81, 163, 198
CviAII	CATG	5 cut(s)	62, 124, 188, 395, 726
CviJI	RGCY	8 cut(s)	22, 105, 167, 285, 335, 389, 684, 707
CviKI_1	RGCY	8 cut(s)	22, 105, 167, 285, 335, 389, 684, 707
CviQI	GTAC	5 cut(s)	117, 147, 218, 711, 733
DdeI	CTNAG	4 cut(s)	85, 272, 318, 336
DpnI	GATC	3 cut(s)	279, 363, 575
DpnII	GATC	3 cut(s)	277, 361, 573
DraI	TTTAAA	1 cut(s)	666
DraIII	CACNNNGTG	1 cut(s)	513
DrdI	GACNNNNNNGTC	1 cut(s)	310
DseDI	GACNNNNNNGTC	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
Eco31I	GGTCTC	2 cut(s)	133, 527
Eco32I	GATATC	1 cut(s)	850
Eco81I	CCTNAGG	1 cut(s)	318
EcoRI	GAATTC	1 cut(s)	398
EcoRV	GATATC	1 cut(s)	850
FaeI	CATG	5 cut(s)	65, 127, 191, 398, 729
FaqI	GGGAC	2 cut(s)	298, 803
FatI	CATG	5 cut(s)	61, 123, 187, 394, 725
FbaI	TGATCA	1 cut(s)	573
Fnu4HI	GCNGC	5 cut(s)	23, 390, 537, 705, 832
FokI	GGATG	3 cut(s)	157, 277, 280
Fsp4HI	GCNGC	5 cut(s)	23, 390, 537, 705, 832
FspBI	CTAG	2 cut(s)	264, 708
FspI	TGCGCA	1 cut(s)	393
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	5 cut(s)	23, 390, 537, 705, 832
HapII	CCGG	2 cut(s)	581, 593
HhaI	GCGC	1 cut(s)	394
Hin1II	CATG	5 cut(s)	65, 127, 191, 398, 729
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HindIII	AAGCTT	1 cut(s)	682
HinfI	GANTC	2 cut(s)	455, 877
HpaII	CCGG	2 cut(s)	581, 593
HphI	GGTGA	2 cut(s)	421, 805
Hpy166II	GTNNAC	2 cut(s)	185, 655
Hpy188I	TCNGA	6 cut(s)	133, 298, 381, 503, 604, 854
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	2 cut(s)	185, 655
HpyAV	CCTTC	2 cut(s)	86, 362
HpyCH4III	ACNGT	5 cut(s)	202, 562, 571, 659, 817
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	6 cut(s)	417, 426, 507, 536, 680, 704
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 307, 423, 513, 704
HpyF3I	CTNAG	4 cut(s)	85, 272, 318, 336
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	5 cut(s)	65, 127, 191, 398, 729
HspAI	GCGC	1 cut(s)	392
KroI	GCCGGC	1 cut(s)	592
KroNI	GCCGGC	1 cut(s)	594
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	3 cut(s)	277, 361, 573
LguI	GCTCTTC	1 cut(s)	292
LmnI	GCTCC	2 cut(s)	164, 307
LpnPI	CCDG	6 cut(s)	129, 330, 582, 594, 606, 721
Lsp1109I	GCAGC	5 cut(s)	9, 376, 548, 716, 818
LweI	GCATC	7 cut(s)	258, 349, 435, 494, 607, 657, 707
MaeI	CTAG	2 cut(s)	264, 708
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	2 cut(s)	196, 811
MalI	GATC	3 cut(s)	279, 363, 575
MboI	GATC	3 cut(s)	277, 361, 573
MboII	GAAGA	3 cut(s)	101, 279, 394
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	2 cut(s)	277, 361
MhlI	GDGCHC	1 cut(s)	557
MluCI	AATT	8 cut(s)	152, 348, 398, 412, 605, 675, 805, 842
MmeI	TCCRAC	1 cut(s)	184
MroNI	GCCGGC	1 cut(s)	592
MseI	TTAA	3 cut(s)	351, 665, 686
MspCI	CTTAAG	1 cut(s)	685
MspI	CCGG	2 cut(s)	581, 593
MunI	CAATTG	1 cut(s)	675
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	5 cut(s)	36, 307, 423, 513, 704
NaeI	GCCGGC	1 cut(s)	594
NdeII	GATC	3 cut(s)	277, 361, 573
NgoMIV	GCCGGC	1 cut(s)	592
NlaIII	CATG	5 cut(s)	65, 127, 191, 398, 729
NmuCI	GTSAC	2 cut(s)	196, 811
NsbI	TGCGCA	1 cut(s)	393
NspI	RCATGY	1 cut(s)	729
PciI	ACATGT	1 cut(s)	725
PciSI	GCTCTTC	1 cut(s)	292
PdiI	GCCGGC	1 cut(s)	594
PfeI	GAWTC	2 cut(s)	455, 877
Pfl23II	CGTACG	1 cut(s)	217
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	5 cut(s)	24, 391, 538, 706, 833
PscI	ACATGT	1 cut(s)	725
PspLI	CGTACG	1 cut(s)	217
PstI	CTGCAG	1 cut(s)	706
PstNI	CAGNNNCTG	2 cut(s)	149, 602
PsuI	RGATCY	2 cut(s)	277, 361
RsaI	GTAC	5 cut(s)	118, 148, 219, 712, 734
RsaNI	GTAC	5 cut(s)	117, 147, 218, 711, 733
SapI	GCTCTTC	1 cut(s)	292
SaqAI	TTAA	3 cut(s)	351, 665, 686
SatI	GCNGC	5 cut(s)	23, 390, 537, 705, 832
Sau3AI	GATC	3 cut(s)	277, 361, 573
ScaI	AGTACT	2 cut(s)	712, 734
SduI	GDGCHC	1 cut(s)	557
SetI	ASST	8 cut(s)	148, 169, 223, 438, 466, 547, 686, 709
SfaNI	GCATC	7 cut(s)	258, 349, 435, 494, 607, 657, 707
SfcI	CTRYAG	2 cut(s)	546, 702
SmlI	CTYRAG	1 cut(s)	685
SmoI	CTYRAG	1 cut(s)	685
Sse9I	AATT	8 cut(s)	152, 348, 398, 412, 605, 675, 805, 842
SsiI	CCGC	1 cut(s)	445
SspMI	CTAG	2 cut(s)	264, 708
TaaI	ACNGT	5 cut(s)	202, 562, 571, 659, 817
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	343
TasI	AATT	8 cut(s)	152, 348, 398, 412, 605, 675, 805, 842
TatI	WGTACW	2 cut(s)	710, 732
TfiI	GAWTC	2 cut(s)	455, 877
Tru1I	TTAA	3 cut(s)	351, 665, 686
Tru9I	TTAA	3 cut(s)	351, 665, 686
TseFI	GTSAC	2 cut(s)	196, 811
TseI	GCWGC	5 cut(s)	22, 389, 536, 704, 831
Tsp45I	GTSAC	2 cut(s)	196, 811
TspDTI	ATGAA	4 cut(s)	279, 411, 507, 684
TspGWI	ACGGA	1 cut(s)	320
Van91I	CCANNNNNTGG	1 cut(s)	113
Vha464I	CTTAAG	1 cut(s)	685
XapI	RAATTY	2 cut(s)	398, 805
XceI	RCATGY	1 cut(s)	729
XspI	CTAG	2 cut(s)	264, 708
ZrmI	AGTACT	2 cut(s)	712, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.