Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002486

Physical Location & Seq

Genomic Coordinates Forward (+)

22980246 .. 22982584

Gene Structure 2339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0161200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGAATTCATGCCAGTAATTGCTGAAGTGCTGAGAAGGCTGGGAGTGAAGGGCGTGGAGATAAAGAAACCAGAGCAGCTCAAAACCGTGGCCTCACTCATAATCCCTGGAGGAGAGAGCACCACCATGGCTAAGCTCGCCGAGTACCACAACCTGAATGCATTTGAGCTCGCCTTCTTCGTTTGGGTTCCAGCCCAATTCGAAGTAAAATTGTGCTACCGCGAGCACACCATGATCATTGTTACAAGAGTTTTCTTAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0010168 GO:0012505 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

87

Amino Acids

9.91

Weight (kDa)

7.9

Isoelectric Point (pI)

30.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNO	PF01174	10 - 53	1.5e-09	SNO glutamine amidotransferase family
Mlo	PF03094	52 - 86	2e-06	Mlo family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27870 AT4G27870 AT5G24290 AT5G24290
fragaria_vesca	FvH4_2g18570 FvH4_2g18570 FvH4_2g18570 FvH4_2g18570 FvH4_2g18580 FvH4_2g18580
malus_domestica	MD05G1171900.v1.1 MD10G1160200.v1.1
prunus_persica	Prupe.8G199300_v2.0.a1
pyrus_communis	pycom05g15860 pycom10g13830
rosa_chinensis	RchiOBHm_Chr6g0284131 RchiOBHm_Chr6g0284141 RchiOBHm_Chr6g0284151 RchiOBHm_Chr6g0284161
rosa_laevigata	RLG00000012765 RLG00000012766 RLG00000012767
rosa_multiflora	Rmu_sc0003778.1_g000035 Rmu_sc0007496.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184850 Rroxscaffold_7G00184880 Rroxscaffold_7G00184890 Rroxscaffold_7G00184900
rosa_rugosa	Rorug06G0161100 Rorug06G0161200 Rorug06G0161300
rosa_samantha	Rh6AG273900 Rh6AG274000 Rh6BG274600 Rh6BG274700 Rh6CG276100 Rh6CG276200 Rh6DG269000 Rh6DG269100
rosa_wichuraiana	Rw6G023570 Rw6G023580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	222
AciI	CCGC	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	106
AluBI	AGCT	3 cut(s)	79, 136, 169
AluI	AGCT	3 cut(s)	79, 136, 169
Alw21I	GWGCWC	3 cut(s)	122, 171, 228
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	76
ApoI	RAATTY	1 cut(s)	5
AsuII	TTCGAA	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	3 cut(s)	122, 171, 228
BbvI	GCAGC	1 cut(s)	88
BciT130I	CCWGG	1 cut(s)	108
BclI	TGATCA	1 cut(s)	234
BisI	GCNGC	1 cut(s)	77
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	108
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	129
Bpu1102I	GCTNAGC	1 cut(s)	132
Bpu14I	TTCGAA	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	87, 106, 126
Bse1I	ACTGG	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	3 cut(s)	87, 106, 126
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	88
BseYI	CCCAGC	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	92
BsiHKAI	GWGCWC	3 cut(s)	122, 171, 228
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	201
Bsp1286I	GDGCHC	3 cut(s)	122, 171, 228
Bsp143I	GATC	1 cut(s)	234
Bsp1720I	GCTNAGC	1 cut(s)	132
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	1 cut(s)	24
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	189
BspT104I	TTCGAA	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	3 cut(s)	87, 106, 126
BssMI	GATC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	88
BstBI	TTCGAA	1 cut(s)	201
BstC8I	GCNNGC	3 cut(s)	138, 171, 224
BstDEI	CTNAG	3 cut(s)	32, 132, 256
BstDSI	CCRYGG	2 cut(s)	87, 126
BstFNI	CGCG	1 cut(s)	222
BstKTI	GATC	1 cut(s)	237
BstMBI	GATC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 137
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	106
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	92
BtgI	CCRYGG	2 cut(s)	87, 126
Cac8I	GCNNGC	3 cut(s)	138, 171, 224
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	3 cut(s)	10, 127, 232
CviJI	RGCY	7 cut(s)	40, 79, 92, 131, 136, 169, 194
CviKI_1	RGCY	7 cut(s)	40, 79, 92, 131, 136, 169, 194
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	3 cut(s)	32, 132, 256
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	169
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	126
EcoT22I	ATGCAT	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	3 cut(s)	13, 130, 235
FaiI	YATR	4 cut(s)	11, 101, 128, 233
FatI	CATG	3 cut(s)	9, 126, 231
FbaI	TGATCA	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	77
GluI	GCNGC	1 cut(s)	77
GsaI	CCCAGC	1 cut(s)	44
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	3 cut(s)	13, 130, 235
HpyAV	CCTTC	3 cut(s)	30, 43, 184
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 137
HpyF3I	CTNAG	3 cut(s)	32, 132, 256
Hsp92II	CATG	3 cut(s)	13, 130, 235
Ksp22I	TGATCA	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	234
LpnPI	CCDG	7 cut(s)	26, 27, 84, 93, 120, 167, 204
Lsp1109I	GCAGC	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	1 cut(s)	169
MhlI	GDGCHC	3 cut(s)	122, 171, 228
MluCI	AATT	4 cut(s)	5, 18, 197, 209
MnlI	CCTC	2 cut(s)	103, 104
Mph1103I	ATGCAT	1 cut(s)	163
MslI	CAYNNNNRTG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	108
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	37, 137
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	1 cut(s)	234
NlaIII	CATG	3 cut(s)	13, 130, 235
NlaIV	GGNNCC	1 cut(s)	189
NmeAIII	GCCGAG	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	163
NspV	TTCGAA	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	78
Psp124BI	GAGCTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	106
PspFI	CCCAGC	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	189
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	171
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	1 cut(s)	234
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	3 cut(s)	122, 171, 228
SetI	ASST	4 cut(s)	81, 138, 156, 171
SfuI	TTCGAA	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	4 cut(s)	5, 18, 197, 209
SsiI	CCGC	1 cut(s)	220
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	1 cut(s)	201
TasI	AATT	4 cut(s)	5, 18, 197, 209
TseI	GCWGC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	5
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.