Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007496.1

Orthogroup ID

OG0002486

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1406

Gene Structure 1405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007496.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 727 bp

atggaagcgacccgagagcagtgggaggagaatgaggaagtgggcatggacttgcgaggaaggccgcctcgccaaaacatcaacacgatcactagcggtgaagatgttgtccattcctcacagagttcaagtgaagctgaatctctcaatgcagaggaggaagaagaagctaagggaagcccaagaaatggttttcgcatggtctctgacaaaaatggagttgccgaatcctcatatacgtctgatttcaatggtggagaagttgagtatcttattttcgagaaaatttctgggagtgaaatagtggctagtgaagtagagagtctaagctttcaaaagagtgttgaagccaagcgtcaagatgatgactatattaagttgaaggatgaagagttacctggttttggtgctttaccttccacgcagtccattgagcaaaatgaaagctatgcttctctggaaaatggaaaggctgaacatgggaaagttaagttgagagacataagtgagcaagaagtgtctgaattgtatcttgagagggtatatgagaagccggctgcacatgaattctactgtcctaattgcaattcttgcatcaccaaggttcttatacgtgagaaggaattggagaatagacctgaaacatttagatgcacttcctgctttagtttcctctttcctcaaggcaattggttccgtcccaaagcagtacccacaatagtggaac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0010168 GO:0012505 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

27.37

Weight (kDa)

4.62

Isoelectric Point (pI)

54.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27870 AT4G27870 AT5G24290 AT5G24290
fragaria_vesca	FvH4_2g18570 FvH4_2g18570 FvH4_2g18570 FvH4_2g18570 FvH4_2g18580 FvH4_2g18580
malus_domestica	MD05G1171900.v1.1 MD10G1160200.v1.1
prunus_persica	Prupe.8G199300_v2.0.a1
pyrus_communis	pycom05g15860 pycom10g13830
rosa_chinensis	RchiOBHm_Chr6g0284131 RchiOBHm_Chr6g0284141 RchiOBHm_Chr6g0284151 RchiOBHm_Chr6g0284161
rosa_laevigata	RLG00000012765 RLG00000012766 RLG00000012767
rosa_multiflora	Rmu_sc0003778.1_g000035 Rmu_sc0007496.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184850 Rroxscaffold_7G00184880 Rroxscaffold_7G00184890 Rroxscaffold_7G00184900
rosa_rugosa	Rorug06G0161100 Rorug06G0161200 Rorug06G0161300
rosa_samantha	Rh6AG273900 Rh6AG274000 Rh6BG274600 Rh6BG274700 Rh6CG276100 Rh6CG276200 Rh6DG269000 Rh6DG269100
rosa_wichuraiana	Rw6G023570 Rw6G023580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	188
AciI	CCGC	2 cut(s)	65, 96
AcsI	RAATTY	2 cut(s)	285, 566
AfaI	GTAC	1 cut(s)	711
AfiI	CCNNNNNNNGG	2 cut(s)	188, 404
AgsI	TTSAA	5 cut(s)	129, 250, 335, 347, 382
AjnI	CCWGG	1 cut(s)	397
AleI	CACNNNNGTG	1 cut(s)	719
AluBI	AGCT	4 cut(s)	137, 170, 330, 447
AluI	AGCT	4 cut(s)	137, 170, 330, 447
Alw26I	GTCTC	2 cut(s)	208, 492
Ama87I	CYCGRG	1 cut(s)	12
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	1 cut(s)	557
ApoI	RAATTY	2 cut(s)	285, 566
AsuHPI	GGTGA	2 cut(s)	110, 589
AvaI	CYCGRG	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	544
BciT130I	CCWGG	1 cut(s)	399
BcoDI	GTCTC	2 cut(s)	208, 492
BfaI	CTAG	2 cut(s)	93, 309
BisI	GCNGC	2 cut(s)	65, 558
BlsI	GCNGC	2 cut(s)	66, 559
Bme1390I	CCNGG	1 cut(s)	399
BmeT110I	CYCGRG	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	695
BmrFI	CCNGG	1 cut(s)	399
BmsI	GCATC	2 cut(s)	603, 641
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	2 cut(s)	554, 666
BsaAI	YACGTR	1 cut(s)	614
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	600
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 404
Bse118I	RCCGGY	1 cut(s)	553
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	2 cut(s)	188, 404
BseRI	GAGGAG	2 cut(s)	41, 170
BseXI	GCAGC	1 cut(s)	544
BsgI	GTGCAG	1 cut(s)	543
BshFI	GGCC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	554
BslFI	GGGAC	1 cut(s)	684
BslI	CCNNNNNNNGG	2 cut(s)	188, 404
BsmAI	GTCTC	2 cut(s)	208, 492
BsmFI	GGGAC	1 cut(s)	684
BsnI	GGCC	1 cut(s)	64
Bso31I	GGTCTC	1 cut(s)	208
BsoBI	CYCGRG	1 cut(s)	12
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	2 cut(s)	65, 96
BspANI	GGCC	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	695
BspTNI	GGTCTC	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	553
BssAI	RCCGGY	1 cut(s)	553
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	1 cut(s)	575
Bst6I	CTCTTC	1 cut(s)	384
BstAPI	GCANNNNNTGC	2 cut(s)	591, 660
BstBAI	YACGTR	1 cut(s)	614
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	2 cut(s)	171, 326
BstF5I	GGATG	1 cut(s)	391
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	2 cut(s)	208, 492
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 591, 660
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	544
BstXI	CCANNNNNNTGG	1 cut(s)	721
BsuRI	GGCC	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	391
BtsI	GCAGTG	1 cut(s)	26
BtsIMutI	CAGTG	1 cut(s)	26
Cac8I	GCNNGC	1 cut(s)	555
Cfr10I	RCCGGY	1 cut(s)	553
CseI	GACGC	1 cut(s)	344
CsiI	ACCWGGT	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	710
CviAII	CATG	4 cut(s)	46, 199, 479, 563
CviQI	GTAC	1 cut(s)	710
DdeI	CTNAG	2 cut(s)	171, 326
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	600
Eco31I	GGTCTC	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	12
EcoRI	GAATTC	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	600
FaeI	CATG	4 cut(s)	49, 202, 482, 566
FalI	AAGNNNNNCTT	2 cut(s)	436, 468
FaqI	GGGAC	1 cut(s)	684
FatI	CATG	4 cut(s)	45, 198, 478, 562
Fnu4HI	GCNGC	2 cut(s)	65, 558
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	2 cut(s)	65, 558
FspBI	CTAG	2 cut(s)	93, 309
GluI	GCNGC	2 cut(s)	65, 558
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	1 cut(s)	554
HgaI	GACGC	1 cut(s)	344
Hin1II	CATG	4 cut(s)	49, 202, 482, 566
HindIII	AAGCTT	1 cut(s)	328
HinfI	GANTC	3 cut(s)	140, 227, 322
HpaII	CCGG	1 cut(s)	554
HphI	GGTGA	2 cut(s)	110, 589
Hpy188I	TCNGA	3 cut(s)	208, 244, 523
Hpy188III	TCNNGA	4 cut(s)	280, 359, 458, 533
HpyAV	CCTTC	4 cut(s)	54, 376, 426, 613
HpyCH4III	ACNGT	1 cut(s)	575
HpyCH4IV	ACGT	2 cut(s)	239, 613
HpyCH4V	TGCA	5 cut(s)	152, 560, 585, 594, 654
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 591, 660
HpyF3I	CTNAG	2 cut(s)	171, 326
HpySE526I	ACGT	2 cut(s)	239, 613
Hsp92II	CATG	4 cut(s)	49, 202, 482, 566
KroI	GCCGGC	1 cut(s)	553
KroNI	GCCGGC	1 cut(s)	555
Kzo9I	GATC	1 cut(s)	87
LpnPI	CCDG	7 cut(s)	276, 384, 411, 443, 567, 651, 673
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	2 cut(s)	603, 641
MabI	ACCWGGT	1 cut(s)	397
MaeI	CTAG	2 cut(s)	93, 309
MaeII	ACGT	2 cut(s)	239, 613
MaeIII	GTNAC	1 cut(s)	393
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	4 cut(s)	113, 173, 176, 401
MfeI	CAATTG	1 cut(s)	688
MluCI	AATT	7 cut(s)	285, 524, 566, 580, 586, 623, 688
MlyI	GAGTC	1 cut(s)	331
MroNI	GCCGGC	1 cut(s)	553
MseI	TTAA	2 cut(s)	375, 489
MslI	CAYNNNNRTG	2 cut(s)	649, 719
MspI	CCGG	1 cut(s)	554
MspR9I	CCNGG	1 cut(s)	399
MunI	CAATTG	1 cut(s)	688
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	3 cut(s)	61, 591, 660
NaeI	GCCGGC	1 cut(s)	555
NdeII	GATC	1 cut(s)	87
NgoMIV	GCCGGC	1 cut(s)	553
NlaIII	CATG	4 cut(s)	49, 202, 482, 566
NlaIV	GGNNCC	1 cut(s)	695
OliI	CACNNNNGTG	1 cut(s)	719
PdiI	GCCGGC	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	140, 227
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	66, 559
PleI	GAGTC	1 cut(s)	330
PpsI	GAGTC	1 cut(s)	330
Ppu21I	YACGTR	1 cut(s)	614
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	695
RsaI	GTAC	1 cut(s)	711
RsaNI	GTAC	1 cut(s)	710
RseI	CAYNNNNRTG	2 cut(s)	649, 719
SaqAI	TTAA	2 cut(s)	375, 489
SatI	GCNGC	2 cut(s)	65, 558
Sau3AI	GATC	1 cut(s)	87
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	399
SexAI	ACCWGGT	1 cut(s)	397
SfaNI	GCATC	2 cut(s)	603, 641
SmiMI	CAYNNNNRTG	2 cut(s)	649, 719
SmlI	CTYRAG	2 cut(s)	533, 681
SmoI	CTYRAG	2 cut(s)	533, 681
Sse9I	AATT	7 cut(s)	285, 524, 566, 580, 586, 623, 688
SsiI	CCGC	2 cut(s)	65, 96
SspMI	CTAG	2 cut(s)	93, 309
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	1 cut(s)	575
TaiI	ACGT	2 cut(s)	242, 616
TaqI	TCGA	1 cut(s)	279
TasI	AATT	7 cut(s)	285, 524, 566, 580, 586, 623, 688
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	2 cut(s)	140, 227
Tru1I	TTAA	2 cut(s)	375, 489
Tru9I	TTAA	2 cut(s)	375, 489
TscAI	CASTG	1 cut(s)	26
TseI	GCWGC	1 cut(s)	557
TspDTI	ATGAA	3 cut(s)	402, 456, 579
TspGWI	ACGGA	1 cut(s)	686
TspRI	CASTG	1 cut(s)	26
Van91I	CCANNNNNTGG	1 cut(s)	188
XapI	RAATTY	2 cut(s)	285, 566
XspI	CTAG	2 cut(s)	93, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.