Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002486

Physical Location & Seq

Genomic Coordinates Reverse (-)

15923483 .. 15926961

Gene Structure 3479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18580.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGAAGCAACATTAGAGAGGCTGCCTCTTCAAAACAGCAACACGGACATTACCACCAGTACTAATGGTAATGGTGGGAATATTGTTGTCTATTCCTTAGAAGAAGGCGAGGGAAGCCCAAGAAATGGTTCTCATGACATGCTCTCTGATACAATTAGTGGAGGTACTAATCTACTGTATGGATCTAGCTCCCATGGTGGAGATGATTCTCTTACTTCCGAGATAGTGAACGTACGTCTTCAAAAGAGAGTTGAGACCGACCACCAAGATGAGGATACTAGGAAGCACAAGGATCTTGGTTCTTCATCATCTAATTCCAAGCAGTCCACTGAGGAAAATGGAATACCGGCTAAGCATCAGAAAGTGAAGTTGACAGATCTTGCAGGGGTGTTTGAGAAGACGGCTGCACAGGAATTCTACTGTCCTAATTGCAAAGCTTGCATCACCGAGGTTCTAATTGGCGAAAGCGAACCAAAACTTCCTTCACCACTTATTCATTGGCCGGAAGAACCTCTTAGTCCAACACCTTCTGAGCTAGAAGAACCTCTTACTCCACTACGTCCTCAAGTGACAGAAGAACCACCAGTCAGATGCACTTCGTGCTTTAGTCTCCTATTTCATGCAGGCGATTGGATCTTTCGTCGAGATCGACCAGTCCCTACTGAGCAAGTTATTACTGTGCCAGATGATCAAATGCCACTATTGCCACCACGAGATGCTACTAATAAGAGGTTGGAAATCATCAAAAGCATCGTTTACGGTGGTTTAACTGAAGCAATTGCGAGCTTAAGTATTGTGGCATCTGCAGCTAGTGCTGATACTGCCACAGTGAACATTTTCGTTTTGGCATTGGCAAACTTGCTTGGTGGTCTTTTCATCATTGGACACAATCTCTGGGAACTGAAAGCAGATCAAGATGACAGTAAATATCAAGAAGTACTTGGGAACAAAGAGAATTTCATTTTTCATTCCCCAGTTGCCATATTATCGTTCCTCATTTTCGGGTTGGTACCTCCATTGGTTTATGGCTTCTCATTCCCTAATAGCGACGACAGCGACCTAAAGATTGCAGCAGTTGCTGGATCTTCTCTTTTATGCATCATACTTCTGGCAATTGGAAAGGCTTACATCCAGACGCCACCCAAAAAGTACATCAAAACTGTGCTGTACTACTTCGTGATCGGGGTCGGGGTCGCCGGTCTTTCTTACTTAGCAGGAGATCTGATTAACAAACTTGTAGAGAAGCTTGGATGGTTCAGCTCAGCTGTAGCTGGCGGTCTGCCTCTTCCTCATCAGACGATGATGAGTACAGTGAAGCCTGCATGGGAATCCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

446

Amino Acids

48.33

Weight (kDa)

5.0

Isoelectric Point (pI)

50.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27870 AT4G27870 AT5G24290 AT5G24290
fragaria_vesca	FvH4_2g18570 FvH4_2g18570 FvH4_2g18570 FvH4_2g18570 FvH4_2g18580 FvH4_2g18580
malus_domestica	MD05G1171900.v1.1 MD10G1160200.v1.1
prunus_persica	Prupe.8G199300_v2.0.a1
pyrus_communis	pycom05g15860 pycom10g13830
rosa_chinensis	RchiOBHm_Chr6g0284131 RchiOBHm_Chr6g0284141 RchiOBHm_Chr6g0284151 RchiOBHm_Chr6g0284161
rosa_laevigata	RLG00000012765 RLG00000012766 RLG00000012767
rosa_multiflora	Rmu_sc0003778.1_g000035 Rmu_sc0007496.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184850 Rroxscaffold_7G00184880 Rroxscaffold_7G00184890 Rroxscaffold_7G00184900
rosa_rugosa	Rorug06G0161100 Rorug06G0161200 Rorug06G0161300
rosa_samantha	Rh6AG273900 Rh6AG274000 Rh6BG274600 Rh6BG274700 Rh6CG276100 Rh6CG276200 Rh6DG269000 Rh6DG269100
rosa_wichuraiana	Rw6G023570 Rw6G023580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1009
AccB1I	GGYRCC	1 cut(s)	1009
AccB7I	CCANNNNNTGG	1 cut(s)	125
AciI	CCGC	1 cut(s)	1275
AclWI	GGATC	4 cut(s)	190, 300, 641, 1090
AcoI	YGGCCR	1 cut(s)	500
AcsI	RAATTY	2 cut(s)	413, 955
AcuI	CTGAAG	1 cut(s)	792
AcyI	GRCGYC	1 cut(s)	1136
AdeI	CACNNNGTG	1 cut(s)	600
AfaI	GTAC	8 cut(s)	61, 166, 234, 939, 1011, 1151, 1169, 1309
AfiI	CCNNNNNNNGG	2 cut(s)	125, 271
AflII	CTTAAG	1 cut(s)	787
AgsI	TTSAA	2 cut(s)	32, 242
AjnI	CCWGG	1 cut(s)	1331
AjuI	GAANNNNNNNTTGG	4 cut(s)	112, 144, 466, 498
AluBI	AGCT	9 cut(s)	189, 437, 535, 786, 809, 1246, 1260, 1265, 1271
AluI	AGCT	9 cut(s)	189, 437, 535, 786, 809, 1246, 1260, 1265, 1271
Alw26I	GTCTC	2 cut(s)	248, 614
AlwI	GGATC	4 cut(s)	190, 300, 641, 1090
AlwNI	CAGNNNCTG	1 cut(s)	1079
AoxI	GGCC	1 cut(s)	500
ApeKI	GCWGC	4 cut(s)	22, 404, 806, 1070
ApoI	RAATTY	2 cut(s)	413, 955
Asp700I	GAANNNNTTC	2 cut(s)	127, 836
Asp718I	GGTACC	1 cut(s)	1009
AsuHPI	GGTGA	2 cut(s)	436, 477
BanI	GGYRCC	1 cut(s)	1009
BauI	CACGAG	1 cut(s)	711
BbsI	GAAGAC	2 cut(s)	230, 404
BbvI	GCAGC	4 cut(s)	9, 391, 818, 1082
BccI	CCATC	1 cut(s)	1245
BceAI	ACGGC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	1333
BciVI	GTATCC	1 cut(s)	268
BclI	TGATCA	1 cut(s)	688
BcoDI	GTCTC	2 cut(s)	248, 614
BfaI	CTAG	4 cut(s)	186, 279, 536, 810
BfmI	CTRYAG	2 cut(s)	804, 1266
BfrI	CTTAAG	1 cut(s)	787
BfuI	GTATCC	1 cut(s)	268
BglII	AGATCT	2 cut(s)	376, 1219
BisI	GCNGC	4 cut(s)	23, 405, 807, 1071
BlpI	GCTNAGC	2 cut(s)	351, 1261
BlsI	GCNGC	4 cut(s)	24, 406, 808, 1072
BmcAI	AGTACT	2 cut(s)	61, 939
Bme1390I	CCNGG	1 cut(s)	1333
BmiI	GGNNCC	1 cut(s)	1011
BmrFI	CCNGG	1 cut(s)	1333
BmrI	ACTGGG	1 cut(s)	968
BmsI	GCATC	7 cut(s)	364, 450, 581, 706, 759, 809, 1107
BmuI	ACTGGG	1 cut(s)	968
BpiI	GAAGAC	2 cut(s)	230, 404
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
Bpu1102I	GCTNAGC	2 cut(s)	351, 1261
BpuEI	CTTGAG	1 cut(s)	549
BsaHI	GRCGYC	1 cut(s)	1136
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	193, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 271
Bse118I	RCCGGY	2 cut(s)	346, 1196
Bse1I	ACTGG	4 cut(s)	57, 584, 653, 974
BseBI	CCWGG	1 cut(s)	1333
BseDI	CCNNGG	2 cut(s)	193, 447
BseGI	GGATG	2 cut(s)	1128, 1256
BseLI	CCNNNNNNNGG	2 cut(s)	125, 271
BseMII	CTCAG	4 cut(s)	321, 522, 654, 1275
BseNI	ACTGG	4 cut(s)	57, 584, 653, 974
BseXI	GCAGC	4 cut(s)	9, 391, 818, 1082
BsgI	GTGCAG	1 cut(s)	390
BshFI	GGCC	1 cut(s)	502
BshNI	GGYRCC	1 cut(s)	1009
BsiSI	CCGG	3 cut(s)	347, 503, 1197
BsiWI	CGTACG	1 cut(s)	232
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	2 cut(s)	125, 271
BsmAI	GTCTC	2 cut(s)	248, 614
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	1 cut(s)	502
Bso31I	GGTCTC	1 cut(s)	248
Bsp1720I	GCTNAGC	2 cut(s)	351, 1261
Bsp19I	CCATGG	1 cut(s)	193
BspACI	CCGC	1 cut(s)	1275
BspANI	GGCC	1 cut(s)	502
BspCNI	CTCAG	4 cut(s)	322, 523, 655, 1274
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	1011
BspMAI	CTGCAG	1 cut(s)	808
BspPI	GGATC	4 cut(s)	190, 300, 641, 1090
BspT107I	GGYRCC	1 cut(s)	1009
BspTI	CTTAAG	1 cut(s)	787
BspTNI	GGTCTC	1 cut(s)	248
BsrFI	RCCGGY	2 cut(s)	346, 1196
BsrI	ACTGG	4 cut(s)	57, 584, 653, 974
BssAI	RCCGGY	2 cut(s)	346, 1196
BssECI	CCNNGG	2 cut(s)	193, 447
BssNI	GRCGYC	1 cut(s)	1136
BssSI	CACGAG	1 cut(s)	711
BssT1I	CCWWGG	1 cut(s)	193
Bst2BI	CACGAG	1 cut(s)	711
Bst2UI	CCWGG	1 cut(s)	1333
Bst4CI	ACNGT	8 cut(s)	177, 422, 679, 761, 829, 923, 1162, 1312
Bst6I	CTCTTC	2 cut(s)	33, 1290
BstACI	GRCGYC	1 cut(s)	1136
BstAFI	CTTAAG	1 cut(s)	787
BstAPI	GCANNNNNTGC	4 cut(s)	438, 600, 812, 1076
BstC8I	GCNNGC	5 cut(s)	439, 625, 784, 1273, 1320
BstDEI	CTNAG	8 cut(s)	97, 330, 351, 515, 531, 663, 1210, 1261
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	2 cut(s)	1128, 1256
BstMAI	GTCTC	2 cut(s)	248, 614
BstMWI	GCNNNNNNNGC	9 cut(s)	114, 438, 600, 703, 806, 812, 821, 1053, 1076
BstNI	CCWGG	1 cut(s)	1333
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	1331
BstSFI	CTRYAG	2 cut(s)	804, 1266
BstV1I	GCAGC	4 cut(s)	9, 391, 818, 1082
BstV2I	GAAGAC	2 cut(s)	230, 404
BstX2I	RGATCY	6 cut(s)	182, 292, 376, 633, 1082, 1219
BstYI	RGATCY	6 cut(s)	182, 292, 376, 633, 1082, 1219
BsuI	GTATCC	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	502
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	1128, 1256
BtsIMutI	CAGTG	3 cut(s)	327, 834, 1317
Cac8I	GCNNGC	5 cut(s)	439, 625, 784, 1273, 1320
CaiI	CAGNNNCTG	1 cut(s)	1079
CciI	TCATGA	1 cut(s)	133
Cfr10I	RCCGGY	2 cut(s)	346, 1196
CseI	GACGC	1 cut(s)	1144
Csp6I	GTAC	8 cut(s)	60, 165, 233, 938, 1010, 1150, 1168, 1308
CviAII	CATG	5 cut(s)	134, 139, 194, 620, 1323
CviQI	GTAC	8 cut(s)	60, 165, 233, 938, 1010, 1150, 1168, 1308
DdeI	CTNAG	8 cut(s)	97, 330, 351, 515, 531, 663, 1210, 1261
DraIII	CACNNNGTG	1 cut(s)	600
EaeI	YGGCCR	1 cut(s)	500
Eam1104I	CTCTTC	2 cut(s)	33, 1290
EarI	CTCTTC	2 cut(s)	33, 1290
Eco130I	CCWWGG	1 cut(s)	193
Eco31I	GGTCTC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	792
EcoRI	GAATTC	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	1331
EcoT14I	CCWWGG	1 cut(s)	193
EcoT22I	ATGCAT	1 cut(s)	1100
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	5 cut(s)	137, 142, 197, 623, 1326
FalI	AAGNNNNNCTT	6 cut(s)	498, 530, 531, 563, 924, 956
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	5 cut(s)	133, 138, 193, 619, 1322
FbaI	TGATCA	1 cut(s)	688
Fnu4HI	GCNGC	4 cut(s)	23, 405, 807, 1071
FokI	GGATG	2 cut(s)	1115, 1263
Fsp4HI	GCNGC	4 cut(s)	23, 405, 807, 1071
FspBI	CTAG	4 cut(s)	186, 279, 536, 810
GluI	GCNGC	4 cut(s)	23, 405, 807, 1071
HaeIII	GGCC	1 cut(s)	502
HapII	CCGG	3 cut(s)	347, 503, 1197
HgaI	GACGC	1 cut(s)	1144
Hin1I	GRCGYC	1 cut(s)	1136
Hin1II	CATG	5 cut(s)	137, 142, 197, 623, 1326
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HindIII	AAGCTT	2 cut(s)	435, 1244
HinfI	GANTC	2 cut(s)	206, 1328
HpaII	CCGG	3 cut(s)	347, 503, 1197
HphI	GGTGA	2 cut(s)	436, 477
Hpy166II	GTNNAC	5 cut(s)	229, 327, 372, 757, 832
Hpy188I	TCNGA	7 cut(s)	148, 220, 360, 532, 590, 1224, 1296
Hpy188III	TCNNGA	6 cut(s)	134, 644, 914, 932, 1132, 1177
Hpy8I	GTNNAC	5 cut(s)	229, 327, 372, 757, 832
Hpy99I	CGWCG	2 cut(s)	645, 1052
HpyAV	CCTTC	3 cut(s)	98, 492, 537
HpyCH4III	ACNGT	8 cut(s)	177, 422, 679, 761, 829, 923, 1162, 1312
HpyCH4IV	ACGT	3 cut(s)	231, 235, 559
HpyF10VI	GCNNNNNNNGC	9 cut(s)	114, 438, 600, 703, 806, 812, 821, 1053, 1076
HpyF3I	CTNAG	8 cut(s)	97, 330, 351, 515, 531, 663, 1210, 1261
HpySE526I	ACGT	3 cut(s)	231, 235, 559
Hsp92I	GRCGYC	1 cut(s)	1136
Hsp92II	CATG	5 cut(s)	137, 142, 197, 623, 1326
KpnI	GGTACC	1 cut(s)	1013
Ksp22I	TGATCA	1 cut(s)	688
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	4 cut(s)	9, 391, 818, 1082
LweI	GCATC	7 cut(s)	364, 450, 581, 706, 759, 809, 1107
MaeI	CTAG	4 cut(s)	186, 279, 536, 810
MaeII	ACGT	3 cut(s)	231, 235, 559
MaeIII	GTNAC	1 cut(s)	568
MfeI	CAATTG	2 cut(s)	777, 1113
MflI	RGATCY	6 cut(s)	182, 292, 376, 633, 1082, 1219
MluCI	AATT	8 cut(s)	153, 313, 413, 427, 456, 777, 955, 1113
MmeI	TCCRAC	2 cut(s)	545, 714
Mph1103I	ATGCAT	1 cut(s)	1100
MroXI	GAANNNNTTC	2 cut(s)	127, 836
MseI	TTAA	3 cut(s)	767, 788, 1227
MslI	CAYNNNNRTG	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	1265
MspCI	CTTAAG	1 cut(s)	787
MspI	CCGG	3 cut(s)	347, 503, 1197
MspR9I	CCNGG	1 cut(s)	1333
MunI	CAATTG	2 cut(s)	777, 1113
MvaI	CCWGG	1 cut(s)	1333
MwoI	GCNNNNNNNGC	9 cut(s)	114, 438, 600, 703, 806, 812, 821, 1053, 1076
NcoI	CCATGG	1 cut(s)	193
NlaIII	CATG	5 cut(s)	137, 142, 197, 623, 1326
NlaIV	GGNNCC	1 cut(s)	1011
NmuCI	GTSAC	1 cut(s)	568
NsiI	ATGCAT	1 cut(s)	1100
NspI	RCATGY	1 cut(s)	142
PagI	TCATGA	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	646
PdmI	GAANNNNTTC	2 cut(s)	127, 836
PfeI	GAWTC	2 cut(s)	206, 1328
Pfl23II	CGTACG	1 cut(s)	232
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	4 cut(s)	24, 406, 808, 1072
Psp6I	CCWGG	1 cut(s)	1331
PspGI	CCWGG	1 cut(s)	1331
PspLI	CGTACG	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	1011
PstI	CTGCAG	1 cut(s)	808
PstNI	CAGNNNCTG	1 cut(s)	1079
PsuI	RGATCY	6 cut(s)	182, 292, 376, 633, 1082, 1219
PvuII	CAGCTG	1 cut(s)	1265
RsaI	GTAC	8 cut(s)	61, 166, 234, 939, 1011, 1151, 1169, 1309
RsaNI	GTAC	8 cut(s)	60, 165, 233, 938, 1010, 1150, 1168, 1308
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	3 cut(s)	767, 788, 1227
SatI	GCNGC	4 cut(s)	23, 405, 807, 1071
ScaI	AGTACT	2 cut(s)	61, 939
ScrFI	CCNGG	1 cut(s)	1333
SfaNI	GCATC	7 cut(s)	364, 450, 581, 706, 759, 809, 1107
SfcI	CTRYAG	2 cut(s)	804, 1266
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	2 cut(s)	564, 787
SmoI	CTYRAG	2 cut(s)	564, 787
Sse9I	AATT	8 cut(s)	153, 313, 413, 427, 456, 777, 955, 1113
SsiI	CCGC	1 cut(s)	1275
SspI	AATATT	1 cut(s)	82
SspMI	CTAG	4 cut(s)	186, 279, 536, 810
StyD4I	CCNGG	1 cut(s)	1331
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	8 cut(s)	177, 422, 679, 761, 829, 923, 1162, 1312
TaiI	ACGT	3 cut(s)	234, 238, 562
TaqI	TCGA	2 cut(s)	643, 649
TaqII	GACCGA	1 cut(s)	272
TasI	AATT	8 cut(s)	153, 313, 413, 427, 456, 777, 955, 1113
TatI	WGTACW	5 cut(s)	59, 937, 1149, 1167, 1307
TfiI	GAWTC	2 cut(s)	206, 1328
Tru1I	TTAA	3 cut(s)	767, 788, 1227
Tru9I	TTAA	3 cut(s)	767, 788, 1227
TscAI	CASTG	3 cut(s)	334, 834, 1317
TseFI	GTSAC	1 cut(s)	568
TseI	GCWGC	4 cut(s)	22, 404, 806, 1070
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	6 cut(s)	294, 485, 608, 865, 949, 956
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	3 cut(s)	334, 834, 1317
Van91I	CCANNNNNTGG	1 cut(s)	125
Vha464I	CTTAAG	1 cut(s)	787
XapI	RAATTY	2 cut(s)	413, 955
XceI	RCATGY	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	495
XmnI	GAANNNNTTC	2 cut(s)	127, 836
XspI	CTAG	4 cut(s)	186, 279, 536, 810
ZrmI	AGTACT	2 cut(s)	61, 939
Zsp2I	ATGCAT	1 cut(s)	1100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.