Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002486

Physical Location & Seq

Genomic Coordinates Reverse (-)

22931214 .. 22935244

Gene Structure 4031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0161100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3552 bp

ATGGAAGCAGCTGCAAGCATAGTTTTATCTCCTGCTTTGCAAGTGCTGTTTGACAGACTAGCGTCCCCGCTCCTCGAAAGGACTGCTGATATTTTCGGTTTCAAGGACAACCTCCGCAGCCTCGGACATGCGTTGTCAAGGGCTCAAGCTACCCTTGAGGATGCAGAAGAGCAACAATTCACCAGCAAAGCCATTAGACTTTGGCTGTCGGACCTCAAGAATGCAGCCATGGATGCAGAGGATCTTCTGGAGTTCTTCATTGCTCACGAAACTGTGGAGAAAGAGACTGGCAAGGATGTTCCTCTGGTTATGCTTACTGCTTCTAATCATCCGGACAATGTCAGAAAGGTTCTTCAGACTTTAGAACTGAGTCTATCAGAGCGATTTCCACTGTTGAGTATTAGAGATCCTACCCTGCCTCGTATGGCCGATCGAAGATGTGATAACAGGGAGACTAGTTCCTTTTTTGTGGACTCGAAGATATATGGAAGAGATGATGACAAAGACAGGTTAGTCCAACTCTTGCTATCTTCTGCTGCAACCAGTCAAGTGAGTCAACAGGGATATGGATGTGTTGCAGAGTGCATTCCAATAATCGGTATTGGAGGAATTGGTAAGACCACTCTTGCTCAACTGACATATAACGATAAGAGCATAATCCAACACTTCGATCTTAGGGTGTGGATTTCTGTCTCTACAGTCTTCAGTATGAAACATATACTGCAGACCATTATTGCTTCTGCAACAAAGGATGAGGGCAAGCTTTCAAAGATCCTGTCGATGGCAAAATTTTCTATCGACTGGATGATTTATGACCTTGAAGAGTTGCTTTATGAATCTTTACACAACAAAAGGTATTTGATCGTATTAGATGATGTCTGGACTGAAGACCAAGATGACTGGGACAAATTAAGACCTTTGTTTACAGCGGGTCTGGATGGATGCAAAATCATTGTCACCACCCGCAGTAAGAAAATCCCATTCATGATGAACTTCCCAAATTACCAATATCATTTGAAGGGTATGGCAGATGATGATTGCTGGGCTCTGTTCAAACACCGGGCATTTGGATTAGGTGAAGAAGTCAAGTATCCCAACCTTGTGCTGATTGCAAAGCAGATTGCCAAAAAATGTGGAGGTGTACCTTTAGCAGCAAAAAGTTTGGGAAGTGCAATGCGCTTGAAGAGACAGGAAAGGCAGTGGTTGTTCATGCGAGATTGCGAACTCTGGAAATTAGATGCAAGCCAGCATAAAGTTCTACCTGCTCTCATGCTGAGTTATCATCATCTACCATCTCATCTTCGACAATGTTTTGAATTCTGCTCATTGTTTCCCAAAAATTATGAGTTCAAGAAGCAGCAATTAATTCATCTATGGATGGCAGGAGGCTTAATTCTACAAGAAGGAAACAAGCGACCAGAAGACATTGGAGATGAGTACTTTGATGATTTGTTGTGGATGTCTTTCTTTGAAGAAGTAGAGCAATGTGATCGTGGCACTACAGAAATTGCATACAAAATGATTGACATCATTCATGATCTTGCACGATATGTCGCAGGTAAAGAATATGTGATCCTTGAACATGGTCTTTCACTACATAGTCCAACACAAATTCGCCACTCATCTCTTGTTCCTAAGTGGGAAATCACAATTCCAGAAGCTCTGTATGAAGCTGAACATTTGCGGTCTCTCTTCGTCATTGGAGGTTTTGGCACATTCAACAACCAAAGCAAATTATTTTCAAGTTTTGTATACTTGCGTATGCTAGACTTGAAGAGGTGTGCTATAGATGATTTGCCAAGATCATTGGGTGGCTTGATATGTTTGAGGTATCTTGACATGTCTTACACACGCATCTCCAGGTTACCTGAAAGCACAAGTAATCTCTGTTTTTTGCAGACTTTAAACCTTGTTGGTTGTGGTCACCTTAAAGCGTTACCCTTTTTGGGAAATATGATCAACCTGAGACATCTCAATATAACCGGATGTAATCGTTTGAATGGGATGCCTTTTGGTATTCAAAGATTATGTCAACTTCAGATATTGCCATTGTGTGTTGTCAGCAGGAACCAAAGGGCGCTAACTATGCTTGAACATTTAAATCTTTATGGCGAGTTGAATATCACATACTTGGAGAACACAAGCTCTCTAGATGAAGCACAATCAGCTCGATTGAATATGAAGGAAAATCTTGAGTCGGTAGGATTACATTGGGGATCCCAACCCCTGGATCAATCATTTCCGAGACTGCTAGGTAAATCCCGACATGATGCGGTCATCTCCAGCTCTCATGTAGCGCCAGAGCTGTGTAAACATGTTGAAGAAATTCTCGACGGTCTGCAGCCACACAATAATCTGAAAAAGCTAGTTATAAATGGCTATCCAGGAATTAGATTTGCTGATTGGGCTCTCCCAAAAATGCTGATTACAGTTGATTTGATCAACTGTACAAATTGTCAACATCTTCCAGCCCTTGGGAATCTTTCGCTGCTCAAGACACTCTATATGCATGGAATGGATGGCGTCAAGTGCATTGGTACAGAGTTCTATGGTGACGGTACTGACGTAAGGTTTCCATCTCTGAAAGAACTATCTCTTAGTCATTTTCCAAATTTGGAACAATGGTCATGTGCAGATGATGGAAATGCATTTCCTCATTTGAGCAAGTTAACGGTTAGAAGCTGCCCCAAGTTACAACAGATATCATTATCTCAGACTCTTCAACATTTGGAGCTACGGGATTGCAATCCAACATTGATGTGCATAGAAAATTTAACTTTGCTTTCTGTGCTTGTAATAGAAAAAATTCCAGAGCTAACCTCTCTCCCAGAAGGGCTTTTTGTATCAGCTCGTCTGTCTTCTCTGGAGATCTTGTCATGTCCTAAGCTTCGTTCACTGCCTTTGAAGATGGAAAACCTTACTGCTCTGAAATCATTGACCATTCGATGGTGTGAAGAGCTATCCACCCTACCCCAGAGTATAGAGGACCTCAAAGCTCTGGAGTCACTGGAGATTAGTAACTGTAATAATATAATCTCCATGCCGGATGGTGGAATTGCAGGTCTGAGTTCCCTTCAAACTTTGTCCATTGAAAACTGCAATAATCTGATTTATTTGTCATCGAGTTTGGAGAATCTCACATTCCTTGAGCACTTGGTCATTATGTATTGTCCAAATCTTACTTCTTTCCCAGAGGGCACGGGCGCGCAACCTCTCTCTGCCCTACGAAGTTTGACTATCTTGGGTTGTCCTTGGTTTGATTCTCTACCAAATGAATTGCAAAATCTCAGGACGCTACAATGCCTGGAAATTGGTGGCTGCCCCAATCTAACTGCTTTGCCAGACTGGTTTGAGAAACTGGATTCTCTCCGATCCTTGACCATTTGCGATTGTCCCAATTTAATGGTACTGCCTCCCTGTCTAACGCTTCTCACTAAACTCCAGCATCTCTCCATTCAAGATTGTCGTCAGCTCGAAGAAAGATGTTTTGGTGAGGATTCGTCCAAAATAGCCCATATCCCGCATCAATACATTGGTTCACGTCAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0010168 GO:0012505 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1183

Amino Acids

133.67

Weight (kDa)

5.88

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	10 - 98	5.6e-17	Rx N-terminal domain
NB-ARC	PF00931	194 - 356	3.8e-34	NB-ARC domain
WHD_DRP	PF23559	443 - 515	1.2e-23	Disease resistance protein Winged helix domain
LRR_14	PF23598	560 - 893	5e-22	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	695 - 839	1.2e-26	R13L1/DRL21 LRRs
LRR_14	PF23598	1072 - 1155	1.6e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27870 AT4G27870 AT5G24290 AT5G24290
fragaria_vesca	FvH4_2g18570 FvH4_2g18570 FvH4_2g18570 FvH4_2g18570 FvH4_2g18580 FvH4_2g18580
malus_domestica	MD05G1171900.v1.1 MD10G1160200.v1.1
prunus_persica	Prupe.8G199300_v2.0.a1
pyrus_communis	pycom05g15860 pycom10g13830
rosa_chinensis	RchiOBHm_Chr6g0284131 RchiOBHm_Chr6g0284141 RchiOBHm_Chr6g0284151 RchiOBHm_Chr6g0284161
rosa_laevigata	RLG00000012765 RLG00000012766 RLG00000012767
rosa_multiflora	Rmu_sc0003778.1_g000035 Rmu_sc0007496.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184850 Rroxscaffold_7G00184880 Rroxscaffold_7G00184890 Rroxscaffold_7G00184900
rosa_rugosa	Rorug06G0161100 Rorug06G0161200 Rorug06G0161300
rosa_samantha	Rh6AG273900 Rh6AG274000 Rh6BG274600 Rh6BG274700 Rh6CG276100 Rh6CG276200 Rh6DG269000 Rh6DG269100
rosa_wichuraiana	Rw6G023570 Rw6G023580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2372
AasI	GACNNNNNNGTC	1 cut(s)	512
Acc36I	ACCTGC	3 cut(s)	1270, 1547, 3050
AccB7I	CCANNNNNTGG	3 cut(s)	2227, 2474, 2946
AccBSI	CCGCTC	1 cut(s)	70
AccI	GTMKAC	1 cut(s)	1752
AccII	CGCG	1 cut(s)	3206
AccIII	TCCGGA	1 cut(s)	331
AciI	CCGC	7 cut(s)	68, 115, 929, 964, 1684, 2273, 3521
AclWI	GGATC	8 cut(s)	249, 401, 766, 1567, 2211, 2224, 2238, 3366
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	7 cut(s)	788, 1316, 1611, 2325, 2611, 2770, 2805
AcuI	CTGAAG	4 cut(s)	338, 688, 906, 2021
AcyI	GRCGYC	1 cut(s)	2523
AfaI	GTAC	6 cut(s)	1143, 1439, 2449, 2539, 2560, 3408
AfiI	CCNNNNNNNGG	7 cut(s)	596, 781, 1946, 2227, 2474, 2946, 3050
AflIII	ACRYGT	2 cut(s)	1839, 2314
AhlI	ACTAGT	1 cut(s)	455
AjiI	CACGTC	1 cut(s)	3542
AjnI	CCWGG	4 cut(s)	1859, 2226, 2383, 3303
AjuI	GAANNNNNNNTTGG	4 cut(s)	3166, 3198, 3471, 3503
Alw21I	GWGCWC	1 cut(s)	3153
Alw26I	GTCTC	7 cut(s)	278, 446, 697, 1180, 1692, 1960, 2239
AlwI	GGATC	8 cut(s)	249, 401, 766, 1567, 2211, 2224, 2238, 3366
Aor13HI	TCCGGA	1 cut(s)	331
AoxI	GGCC	1 cut(s)	426
ApoI	RAATTY	7 cut(s)	788, 1316, 1611, 2325, 2611, 2770, 2805
ArsI	GACNNNNNNTTYG	6 cut(s)	761, 793, 939, 971, 2014, 2046
AseI	ATTAAT	1 cut(s)	1364
Asp700I	GAANNNNTTC	2 cut(s)	2325, 2805
AspLEI	GCGC	5 cut(s)	1179, 2080, 2299, 3206, 3208
AspS9I	GGNCC	2 cut(s)	211, 2986
AsuC2I	CCSGG	1 cut(s)	1061
AsuHPI	GGTGA	6 cut(s)	172, 949, 1088, 1916, 2564, 3503
AvaII	GGWCC	2 cut(s)	211, 2986
BaeGI	GKGCMC	1 cut(s)	3200
BaeI	ACNNNNGTAYC	2 cut(s)	2550, 2583
BamHI	GGATCC	1 cut(s)	2216
BanII	GRGCYC	3 cut(s)	145, 1048, 2410
BbsI	GAAGAC	4 cut(s)	694, 894, 1428, 2850
Bbv12I	GWGCWC	1 cut(s)	3153
BcgI	CGANNNNNNTGC	4 cut(s)	65, 99, 1472, 1506
BciT130I	CCWGG	4 cut(s)	1861, 2228, 2385, 3305
BciVI	GTATCC	1 cut(s)	1101
BclI	TGATCA	2 cut(s)	1956, 2439
BcnI	CCSGG	1 cut(s)	1061
BcoDI	GTCTC	7 cut(s)	278, 446, 697, 1180, 1692, 1960, 2239
BcuI	ACTAGT	1 cut(s)	455
BfaI	CTAG	6 cut(s)	59, 456, 1766, 2150, 2252, 2366
BfmI	CTRYAG	5 cut(s)	696, 722, 1500, 1785, 2339
BfoI	RGCGCY	2 cut(s)	2081, 2300
BfuAI	ACCTGC	3 cut(s)	1270, 1547, 3050
BfuI	GTATCC	1 cut(s)	1101
BglII	AGATCT	1 cut(s)	2868
BmcAI	AGTACT	1 cut(s)	1439
Bme1390I	CCNGG	5 cut(s)	1061, 1861, 2228, 2385, 3305
Bme18I	GGWCC	2 cut(s)	211, 2986
BmgBI	CACGTC	1 cut(s)	3542
BmgT120I	GGNCC	2 cut(s)	211, 2986
BmiI	GGNNCC	2 cut(s)	2069, 2218
BmrFI	CCNGG	5 cut(s)	1061, 1861, 2228, 2385, 3305
BmrI	ACTGGG	1 cut(s)	910
BmsI	GCATC	9 cut(s)	151, 223, 932, 1228, 1863, 1995, 2260, 3454, 3532
BmuI	ACTGGG	1 cut(s)	910
BoxI	GACNNNNGTC	1 cut(s)	61
BpiI	GAAGAC	4 cut(s)	694, 894, 1428, 2850
BplI	GAGNNNNNCTC	2 cut(s)	2804, 2836
BpmI	CTGGAG	7 cut(s)	269, 1843, 2266, 2885, 3020, 3029, 3425
Bpu10I	CCTNAGC	1 cut(s)	2883
BpuEI	CTTGAG	6 cut(s)	129, 176, 200, 2213, 2477, 3167
BpuMI	CCSGG	1 cut(s)	1061
BsaBI	GATNNNNATC	2 cut(s)	1526, 2745
BsaHI	GRCGYC	1 cut(s)	2523
BsaI	GGTCTC	1 cut(s)	1692
BsaJI	CCNNGG	5 cut(s)	121, 228, 2226, 2473, 3251
BsaWI	WCCGGW	2 cut(s)	331, 1982
BsaXI	ACNNNNNCTCC	2 cut(s)	2858, 2888
Bsc4I	CCNNNNNNNGG	7 cut(s)	596, 781, 1946, 2227, 2474, 2946, 3050
Bse1I	ACTGG	7 cut(s)	292, 543, 806, 905, 3012, 3350, 3363
Bse3DI	GCAATG	3 cut(s)	258, 1179, 1490
Bse8I	GATNNNNATC	2 cut(s)	1526, 2745
BseAI	TCCGGA	1 cut(s)	331
BseBI	CCWGG	4 cut(s)	1861, 2228, 2385, 3305
BseDI	CCNNGG	5 cut(s)	121, 228, 2226, 2473, 3251
BseJI	GATNNNNATC	2 cut(s)	1526, 2745
BseLI	CCNNNNNNNGG	7 cut(s)	596, 781, 1946, 2227, 2474, 2946, 3050
BseMI	GCAATG	3 cut(s)	258, 1179, 1490
BseMII	CTCAG	6 cut(s)	359, 1265, 1955, 2726, 3056, 3301
BseNI	ACTGG	7 cut(s)	292, 543, 806, 905, 3012, 3350, 3363
BsePI	GCGCGC	1 cut(s)	3204
BseRI	GAGGAG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	3200
BseYI	CCCAGC	1 cut(s)	1041
BsgI	GTGCAG	1 cut(s)	2652
Bsh1236I	CGCG	1 cut(s)	3206
Bsh1285I	CGRYCG	1 cut(s)	433
BshFI	GGCC	1 cut(s)	428
BsiEI	CGRYCG	1 cut(s)	433
BsiHKAI	GWGCWC	1 cut(s)	3153
BsiSI	CCGG	4 cut(s)	332, 1060, 1983, 3044
BslFI	GGGAC	3 cut(s)	49, 917, 3378
BslI	CCNNNNNNNGG	7 cut(s)	596, 781, 1946, 2227, 2474, 2946, 3050
BsmAI	GTCTC	7 cut(s)	278, 446, 697, 1180, 1692, 1960, 2239
BsmFI	GGGAC	3 cut(s)	49, 917, 3378
BsmI	GAATGC	2 cut(s)	226, 585
BsnI	GGCC	1 cut(s)	428
Bso31I	GGTCTC	1 cut(s)	1692
Bsp1286I	GDGCHC	5 cut(s)	145, 1048, 2410, 3153, 3200
Bsp13I	TCCGGA	1 cut(s)	331
Bsp1407I	TGTACA	1 cut(s)	2447
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	7 cut(s)	68, 115, 929, 964, 1684, 2273, 3521
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	6 cut(s)	360, 1266, 1956, 2725, 3057, 3300
BspEI	TCCGGA	1 cut(s)	331
BspFNI	CGCG	1 cut(s)	3206
BspHI	TCATGA	2 cut(s)	984, 1534
BspLI	GGNNCC	2 cut(s)	2069, 2218
BspMAI	CTGCAG	2 cut(s)	726, 2343
BspMI	ACCTGC	3 cut(s)	1270, 1547, 3050
BspPI	GGATC	8 cut(s)	249, 401, 766, 1567, 2211, 2224, 2238, 3366
BspQI	GCTCTTC	2 cut(s)	162, 2949
BspTNI	GGTCTC	1 cut(s)	1692
BsrBI	CCGCTC	1 cut(s)	70
BsrDI	GCAATG	3 cut(s)	258, 1179, 1490
BsrGI	TGTACA	1 cut(s)	2447
BsrI	ACTGG	7 cut(s)	292, 543, 806, 905, 3012, 3350, 3363
BssECI	CCNNGG	5 cut(s)	121, 228, 2226, 2473, 3251
BssHII	GCGCGC	1 cut(s)	3204
BssNAI	GTATAC	1 cut(s)	1753
BssNI	GRCGYC	1 cut(s)	2523
BssT1I	CCWWGG	3 cut(s)	228, 2473, 3251
Bst1107I	GTATAC	1 cut(s)	1753
Bst2UI	CCWGG	4 cut(s)	1861, 2228, 2385, 3305
Bst4CI	ACNGT	9 cut(s)	274, 393, 700, 2336, 2431, 2447, 2558, 2674, 3023
Bst6I	CTCTTC	8 cut(s)	162, 484, 816, 1178, 1697, 1769, 2724, 2949
BstACI	GRCGYC	1 cut(s)	2523
BstAUI	TGTACA	1 cut(s)	2447
BstC8I	GCNNGC	5 cut(s)	16, 761, 1243, 1247, 3206
BstDSI	CCRYGG	1 cut(s)	228
BstEII	GGTNACC	2 cut(s)	1863, 1922
BstFNI	CGCG	1 cut(s)	3206
BstH2I	RGCGCY	2 cut(s)	2081, 2300
BstHHI	GCGC	5 cut(s)	1179, 2080, 2299, 3206, 3208
BstMAI	GTCTC	7 cut(s)	278, 446, 697, 1180, 1692, 1960, 2239
BstMCI	CGRYCG	1 cut(s)	433
BstMWI	GCNNNNNNNGC	6 cut(s)	233, 2086, 2165, 2405, 2529, 2788
BstNI	CCWGG	4 cut(s)	1861, 2228, 2385, 3305
BstNSI	RCATGY	3 cut(s)	131, 1843, 2318
BstPAI	GACNNNNGTC	1 cut(s)	61
BstPI	GGTNACC	2 cut(s)	1863, 1922
BstSCI	CCNGG	5 cut(s)	1059, 1859, 2226, 2383, 3303
BstSFI	CTRYAG	5 cut(s)	696, 722, 1500, 1785, 2339
BstSLI	GKGCMC	1 cut(s)	3200
BstUI	CGCG	1 cut(s)	3206
BstV2I	GAAGAC	4 cut(s)	694, 894, 1428, 2850
BstX2I	RGATCY	5 cut(s)	241, 406, 771, 2216, 2868
BstXI	CCANNNNNNTGG	1 cut(s)	3403
BstYI	RGATCY	5 cut(s)	241, 406, 771, 2216, 2868
BstZ17I	GTATAC	1 cut(s)	1753
BsuI	GTATCC	1 cut(s)	1101
BsuRI	GGCC	1 cut(s)	428
BtgI	CCRYGG	1 cut(s)	228
BtrI	CACGTC	1 cut(s)	3542
BtsI	GCAGTG	2 cut(s)	1205, 2894
BtsIMutI	CAGTG	4 cut(s)	389, 1205, 2894, 3005
BveI	ACCTGC	3 cut(s)	1270, 1547, 3050
Cac8I	GCNNGC	5 cut(s)	16, 761, 1243, 1247, 3206
CciI	TCATGA	2 cut(s)	984, 1534
CfoI	GCGC	5 cut(s)	1179, 2080, 2299, 3206, 3208
Cfr13I	GGNCC	2 cut(s)	211, 2986
CseI	GACGC	3 cut(s)	51, 2512, 3301
Csp6I	GTAC	6 cut(s)	1142, 1438, 2448, 2538, 2559, 3407
CspCI	CAANNNNNGTGG	2 cut(s)	1114, 1149
CviQI	GTAC	6 cut(s)	1142, 1438, 2448, 2538, 2559, 3407
DraI	TTTAAA	2 cut(s)	1905, 2100
DrdI	GACNNNNNNGTC	1 cut(s)	512
DseDI	GACNNNNNNGTC	1 cut(s)	512
EaeI	YGGCCR	1 cut(s)	426
Eam1104I	CTCTTC	8 cut(s)	162, 484, 816, 1178, 1697, 1769, 2724, 2949
EarI	CTCTTC	8 cut(s)	162, 484, 816, 1178, 1697, 1769, 2724, 2949
Eco130I	CCWWGG	3 cut(s)	228, 2473, 3251
Eco24I	GRGCYC	3 cut(s)	145, 1048, 2410
Eco31I	GGTCTC	1 cut(s)	1692
Eco32I	GATATC	1 cut(s)	2703
Eco47I	GGWCC	2 cut(s)	211, 2986
Eco57I	CTGAAG	4 cut(s)	338, 688, 906, 2021
Eco91I	GGTNACC	2 cut(s)	1863, 1922
EcoO109I	RGGNCCY	1 cut(s)	2986
EcoO65I	GGTNACC	2 cut(s)	1863, 1922
EcoRI	GAATTC	1 cut(s)	1316
EcoRII	CCWGG	4 cut(s)	1859, 2226, 2383, 3303
EcoRV	GATATC	1 cut(s)	2703
EcoT14I	CCWWGG	3 cut(s)	228, 2473, 3251
EcoT22I	ATGCAT	2 cut(s)	2511, 2650
EcoT38I	GRGCYC	3 cut(s)	145, 1048, 2410
ErhI	CCWWGG	3 cut(s)	228, 2473, 3251
FalI	AAGNNNNNCTT	4 cut(s)	138, 170, 813, 845
FaqI	GGGAC	3 cut(s)	49, 917, 3378
FauI	CCCGC	4 cut(s)	75, 922, 971, 3528
FbaI	TGATCA	2 cut(s)	1956, 2439
FblI	GTMKAC	1 cut(s)	1752
FriOI	GRGCYC	3 cut(s)	145, 1048, 2410
FspBI	CTAG	6 cut(s)	59, 456, 1766, 2150, 2252, 2366
GlaI	GCGC	5 cut(s)	1178, 2079, 2298, 3205, 3207
GsaI	CCCAGC	1 cut(s)	1045
GsuI	CTGGAG	7 cut(s)	269, 1843, 2266, 2885, 3020, 3029, 3425
HaeII	RGCGCY	2 cut(s)	2081, 2300
HaeIII	GGCC	1 cut(s)	428
HapII	CCGG	4 cut(s)	332, 1060, 1983, 3044
HgaI	GACGC	3 cut(s)	51, 2512, 3301
HhaI	GCGC	5 cut(s)	1179, 2080, 2299, 3206, 3208
Hin1I	GRCGYC	1 cut(s)	2523
Hin6I	GCGC	5 cut(s)	1177, 2078, 2297, 3204, 3206
HinP1I	GCGC	5 cut(s)	1177, 2078, 2297, 3204, 3206
HincII	GTYRAC	4 cut(s)	557, 2033, 2459, 2670
HindII	GTYRAC	4 cut(s)	557, 2033, 2459, 2670
HindIII	AAGCTT	2 cut(s)	761, 2885
HpaI	GTTAAC	1 cut(s)	2670
HpaII	CCGG	4 cut(s)	332, 1060, 1983, 3044
HphI	GGTGA	6 cut(s)	172, 949, 1088, 1916, 2564, 3503
Hpy99I	CGWCG	1 cut(s)	2336
HpyAV	CCTTC	5 cut(s)	1012, 1397, 2176, 2825, 3083
HpyCH4III	ACNGT	9 cut(s)	274, 393, 700, 2336, 2431, 2447, 2558, 2674, 3023
HpyCH4IV	ACGT	2 cut(s)	2565, 3541
HpyF10VI	GCNNNNNNNGC	6 cut(s)	233, 2086, 2165, 2405, 2529, 2788
HpySE526I	ACGT	2 cut(s)	2565, 3541
Hsp92I	GRCGYC	1 cut(s)	2523
HspAI	GCGC	5 cut(s)	1177, 2078, 2297, 3204, 3206
Kpn2I	TCCGGA	1 cut(s)	331
Ksp22I	TGATCA	2 cut(s)	1956, 2439
KspAI	GTTAAC	1 cut(s)	2670
LguI	GCTCTTC	2 cut(s)	162, 2949
LmnI	GCTCC	2 cut(s)	75, 2731
LweI	GCATC	9 cut(s)	151, 223, 932, 1228, 1863, 1995, 2260, 3454, 3532
MaeI	CTAG	6 cut(s)	59, 456, 1766, 2150, 2252, 2366
MaeII	ACGT	2 cut(s)	2565, 3541
MaeIII	GTNAC	8 cut(s)	955, 1863, 1922, 1935, 2552, 2691, 3003, 3017
MbiI	CCGCTC	1 cut(s)	70
MflI	RGATCY	5 cut(s)	241, 406, 771, 2216, 2868
MhlI	GDGCHC	5 cut(s)	145, 1048, 2410, 3153, 3200
MlyI	GAGTC	6 cut(s)	379, 467, 562, 2204, 2710, 3011
MmeI	TCCRAC	5 cut(s)	189, 541, 685, 1628, 2774
Mph1103I	ATGCAT	2 cut(s)	2511, 2650
MroI	TCCGGA	1 cut(s)	331
MroXI	GAANNNNTTC	2 cut(s)	2325, 2805
MseI	TTAA	9 cut(s)	911, 1364, 1391, 1904, 1929, 2099, 2669, 2774, 3401
MslI	CAYNNNNRTG	1 cut(s)	2758
MspA1I	CMGCKG	2 cut(s)	11, 929
MspI	CCGG	4 cut(s)	332, 1060, 1983, 3044
MspR9I	CCNGG	5 cut(s)	1061, 1861, 2228, 2385, 3305
Mva1269I	GAATGC	2 cut(s)	226, 585
MvaI	CCWGG	4 cut(s)	1861, 2228, 2385, 3305
MvnI	CGCG	1 cut(s)	3206
MwoI	GCNNNNNNNGC	6 cut(s)	233, 2086, 2165, 2405, 2529, 2788
NciI	CCSGG	1 cut(s)	1061
NcoI	CCATGG	1 cut(s)	228
NlaIV	GGNNCC	2 cut(s)	2069, 2218
NmuCI	GTSAC	4 cut(s)	955, 1922, 2552, 3003
NsiI	ATGCAT	2 cut(s)	2511, 2650
NspI	RCATGY	3 cut(s)	131, 1843, 2318
PagI	TCATGA	2 cut(s)	984, 1534
PauI	GCGCGC	1 cut(s)	3204
PciI	ACATGT	2 cut(s)	1839, 2314
PciSI	GCTCTTC	2 cut(s)	162, 2949
PcsI	WCGNNNNNNNCGW	1 cut(s)	2562
PctI	GAATGC	2 cut(s)	226, 585
PdmI	GAANNNNTTC	2 cut(s)	2325, 2805
PfeI	GAWTC	6 cut(s)	836, 2479, 3133, 3260, 3362, 3497
PflFI	GACNNNGTC	1 cut(s)	338
PflMI	CCANNNNNTGG	3 cut(s)	2227, 2474, 2946
PfoI	TCCNGGA	1 cut(s)	2383
Ple19I	CGATCG	1 cut(s)	433
PleI	GAGTC	6 cut(s)	378, 467, 561, 2203, 2710, 3010
PpsI	GAGTC	6 cut(s)	378, 467, 561, 2203, 2710, 3010
PpuMI	RGGWCCY	1 cut(s)	2986
PscI	ACATGT	2 cut(s)	1839, 2314
PshAI	GACNNNNGTC	1 cut(s)	61
PshBI	ATTAAT	1 cut(s)	1364
PsiI	TTATAA	1 cut(s)	2372
Psp5II	RGGWCCY	1 cut(s)	2986
Psp6I	CCWGG	4 cut(s)	1859, 2226, 2383, 3303
PspEI	GGTNACC	2 cut(s)	1863, 1922
PspFI	CCCAGC	1 cut(s)	1041
PspGI	CCWGG	4 cut(s)	1859, 2226, 2383, 3303
PspN4I	GGNNCC	2 cut(s)	2069, 2218
PspPI	GGNCC	2 cut(s)	211, 2986
PspPPI	RGGWCCY	1 cut(s)	2986
PstI	CTGCAG	2 cut(s)	726, 2343
PsuI	RGATCY	5 cut(s)	241, 406, 771, 2216, 2868
PsyI	GACNNNGTC	1 cut(s)	338
PteI	GCGCGC	1 cut(s)	3204
PvuI	CGATCG	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	6 cut(s)	1143, 1439, 2449, 2539, 2560, 3408
RsaNI	GTAC	6 cut(s)	1142, 1438, 2448, 2538, 2559, 3407
RseI	CAYNNNNRTG	1 cut(s)	2758
SapI	GCTCTTC	2 cut(s)	162, 2949
SaqAI	TTAA	9 cut(s)	911, 1364, 1391, 1904, 1929, 2099, 2669, 2774, 3401
Sau96I	GGNCC	2 cut(s)	211, 2986
ScaI	AGTACT	1 cut(s)	1439
SchI	GAGTC	6 cut(s)	379, 467, 562, 2204, 2710, 3011
ScrFI	CCNGG	5 cut(s)	1061, 1861, 2228, 2385, 3305
SduI	GDGCHC	5 cut(s)	145, 1048, 2410, 3153, 3200
SfaNI	GCATC	9 cut(s)	151, 223, 932, 1228, 1863, 1995, 2260, 3454, 3532
SfcI	CTRYAG	5 cut(s)	696, 722, 1500, 1785, 2339
SinI	GGWCC	2 cut(s)	211, 2986
SmiI	ATTTAAAT	1 cut(s)	2100
SmiMI	CAYNNNNRTG	1 cut(s)	2758
SmlI	CTYRAG	6 cut(s)	144, 155, 215, 2192, 2492, 3146
SmoI	CTYRAG	6 cut(s)	144, 155, 215, 2192, 2492, 3146
SpeI	ACTAGT	1 cut(s)	455
SsiI	CCGC	7 cut(s)	68, 115, 929, 964, 1684, 2273, 3521
SspMI	CTAG	6 cut(s)	59, 456, 1766, 2150, 2252, 2366
StyD4I	CCNGG	5 cut(s)	1059, 1859, 2226, 2383, 3303
StyI	CCWWGG	3 cut(s)	228, 2473, 3251
SwaI	ATTTAAAT	1 cut(s)	2100
TaaI	ACNGT	9 cut(s)	274, 393, 700, 2336, 2431, 2447, 2558, 2674, 3023
TaiI	ACGT	2 cut(s)	2568, 3544
TatI	WGTACW	2 cut(s)	1437, 2447
TfiI	GAWTC	6 cut(s)	836, 2479, 3133, 3260, 3362, 3497
Tru1I	TTAA	9 cut(s)	911, 1364, 1391, 1904, 1929, 2099, 2669, 2774, 3401
Tru9I	TTAA	9 cut(s)	911, 1364, 1391, 1904, 1929, 2099, 2669, 2774, 3401
TscAI	CASTG	4 cut(s)	396, 1205, 2901, 3012
TseFI	GTSAC	4 cut(s)	955, 1922, 2552, 3003
Tsp45I	GTSAC	4 cut(s)	955, 1922, 2552, 3003
TspRI	CASTG	4 cut(s)	396, 1205, 2901, 3012
Tth111I	GACNNNGTC	1 cut(s)	338
Van91I	CCANNNNNTGG	3 cut(s)	2227, 2474, 2946
VpaK11BI	GGWCC	2 cut(s)	211, 2986
VspI	ATTAAT	1 cut(s)	1364
XapI	RAATTY	7 cut(s)	788, 1316, 1611, 2325, 2611, 2770, 2805
XbaI	TCTAGA	1 cut(s)	2149
XceI	RCATGY	3 cut(s)	131, 1843, 2318
XmiI	GTMKAC	1 cut(s)	1752
XmnI	GAANNNNTTC	2 cut(s)	2325, 2805
XspI	CTAG	6 cut(s)	59, 456, 1766, 2150, 2252, 2366
ZrmI	AGTACT	1 cut(s)	1439
Zsp2I	ATGCAT	2 cut(s)	2511, 2650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.