Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002486

Physical Location & Seq

Genomic Coordinates Reverse (-)

47435343 .. 47436328

Gene Structure 986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25484

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGAAGCACCATTAGAAAGGCTGCCTCGCCAAAACAGCAACACAGACATTACCACCAATAATGGTGGGAATGTTGTCTATTCCTTAGAAGAAGGGAAGAGAAGCCCAAGAAATGGTACTCACATAGTCTCTGATAAAAGAGCAGGTACTGAATTGCTATACGGAGCTACATCCAATAGTGGACATGGAATAGTGACTGTTGGAGTAGAGAGCGTACGTTTTCAAAAGAGTGTTGGGACCAAGCACCAAGACGAGGATACTAGGAAGTTGAAGGATCTTGGCTCTTCATCCTCCGAGCAGACGGAGCAGTCCCCTGAGGAAAATGGAGTGGCTAAGCATCGAAAAATTAAGTTGAGAGATCTTGAAGGGGTGTTTGAGAAGACGGCTGCGCATGAATTCTACTGTCCTAATTGCAATGCTTGCATCACCGAGGTTATAGTCCGCGATAGAGAATCAAAACCTCCTACTCCACCACTTATTGAGGCAGATGAACCCGCCAGATGCACTTCGTGCTTTGGTCTCCTATTTCGTGCAGGCACTGGGATCTTTCGTCGACCAGGGCAAGGTAAACAATCTCTTGATACTATATATTCTTCAAAATTTTTGGGCAATTCTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

206

Amino Acids

22.64

Weight (kDa)

8.26

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27870 AT4G27870 AT5G24290 AT5G24290
fragaria_vesca	FvH4_2g18570 FvH4_2g18570 FvH4_2g18570 FvH4_2g18570 FvH4_2g18580 FvH4_2g18580
malus_domestica	MD05G1171900.v1.1 MD10G1160200.v1.1
prunus_persica	Prupe.8G199300_v2.0.a1
pyrus_communis	pycom05g15860 pycom10g13830
rosa_chinensis	RchiOBHm_Chr6g0284131 RchiOBHm_Chr6g0284141 RchiOBHm_Chr6g0284151 RchiOBHm_Chr6g0284161
rosa_laevigata	RLG00000012765 RLG00000012766 RLG00000012767
rosa_multiflora	Rmu_sc0003778.1_g000035 Rmu_sc0007496.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184850 Rroxscaffold_7G00184880 Rroxscaffold_7G00184890 Rroxscaffold_7G00184900
rosa_rugosa	Rorug06G0161100 Rorug06G0161200 Rorug06G0161300
rosa_samantha	Rh6AG273900 Rh6AG274000 Rh6BG274600 Rh6BG274700 Rh6CG276100 Rh6CG276200 Rh6DG269000 Rh6DG269100
rosa_wichuraiana	Rw6G023570 Rw6G023580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	307
Acc16I	TGCGCA	1 cut(s)	390
Acc36I	ACCTGC	1 cut(s)	134
AccB7I	CCANNNNNTGG	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	553
AccII	CGCG	1 cut(s)	444
AciI	CCGC	2 cut(s)	442, 495
AclWI	GGATC	2 cut(s)	282, 551
AcsI	RAATTY	2 cut(s)	395, 599
AdeI	CACNNNGTG	1 cut(s)	510
AfaI	GTAC	3 cut(s)	118, 148, 216
AfiI	CCNNNNNNNGG	3 cut(s)	113, 253, 563
AgsI	TTSAA	4 cut(s)	224, 271, 365, 597
AjnI	CCWGG	1 cut(s)	556
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
Alw26I	GTCTC	2 cut(s)	133, 524
AlwI	GGATC	2 cut(s)	282, 551
AlwNI	CAGNNNCTG	2 cut(s)	149, 539
ApeKI	GCWGC	2 cut(s)	22, 386
ApoI	RAATTY	2 cut(s)	395, 599
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	237
AxyI	CCTNAGG	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	386
BbvI	GCAGC	2 cut(s)	9, 373
BceAI	ACGGC	1 cut(s)	399
BciT130I	CCWGG	1 cut(s)	558
BciVI	GTATCC	1 cut(s)	250
BcoDI	GTCTC	2 cut(s)	133, 524
BfaI	CTAG	1 cut(s)	261
BfuAI	ACCTGC	1 cut(s)	134
BfuI	GTATCC	1 cut(s)	250
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	2 cut(s)	23, 387
BlpI	GCTNAGC	1 cut(s)	333
BlsI	GCNGC	2 cut(s)	24, 388
Bme1390I	CCNGG	1 cut(s)	558
Bme18I	GGWCC	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	558
BmrI	ACTGGG	1 cut(s)	549
BmsI	GCATC	3 cut(s)	346, 432, 491
BmuI	ACTGGG	1 cut(s)	549
BpiI	GAAGAC	1 cut(s)	386
Bpu1102I	GCTNAGC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	524
BsaJI	CCNNGG	2 cut(s)	429, 557
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 253, 563
Bse1I	ACTGG	1 cut(s)	544
Bse21I	CCTNAGG	1 cut(s)	315
Bse3DI	GCAATG	1 cut(s)	421
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	2 cut(s)	429, 557
BseGI	GGATG	2 cut(s)	170, 287
BseLI	CCNNNNNNNGG	3 cut(s)	113, 253, 563
BseMI	GCAATG	1 cut(s)	421
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	544
BseXI	GCAGC	2 cut(s)	9, 373
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	1 cut(s)	444
BsiWI	CGTACG	1 cut(s)	214
BslFI	GGGAC	2 cut(s)	250, 295
BslI	CCNNNNNNNGG	3 cut(s)	113, 253, 563
BsmAI	GTCTC	2 cut(s)	133, 524
BsmFI	GGGAC	2 cut(s)	250, 295
Bso31I	GGTCTC	1 cut(s)	524
Bsp143I	GATC	3 cut(s)	274, 358, 543
Bsp1720I	GCTNAGC	1 cut(s)	333
BspACI	CCGC	2 cut(s)	442, 495
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	444
BspLI	GGNNCC	1 cut(s)	238
BspMI	ACCTGC	1 cut(s)	134
BspPI	GGATC	2 cut(s)	282, 551
BspQI	GCTCTTC	1 cut(s)	289
BspTNI	GGTCTC	1 cut(s)	524
BsrDI	GCAATG	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	544
BssECI	CCNNGG	2 cut(s)	429, 557
BssMI	GATC	3 cut(s)	274, 358, 543
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	2 cut(s)	199, 404
Bst6I	CTCTTC	2 cut(s)	92, 289
BstAPI	GCANNNNNTGC	2 cut(s)	420, 510
BstC8I	GCNNGC	2 cut(s)	421, 535
BstDEI	CTNAG	3 cut(s)	85, 315, 333
BstF5I	GGATG	2 cut(s)	170, 287
BstFNI	CGCG	1 cut(s)	444
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	3 cut(s)	277, 361, 546
BstMAI	GTCTC	2 cut(s)	133, 524
BstMBI	GATC	3 cut(s)	274, 358, 543
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 304, 420, 510
BstNI	CCWGG	1 cut(s)	558
BstSCI	CCNGG	1 cut(s)	556
BstUI	CGCG	1 cut(s)	444
BstV1I	GCAGC	2 cut(s)	9, 373
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	3 cut(s)	274, 358, 543
BstYI	RGATCY	3 cut(s)	274, 358, 543
Bsu36I	CCTNAGG	1 cut(s)	315
BsuI	GTATCC	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	170, 287
BtsIMutI	CAGTG	1 cut(s)	537
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	2 cut(s)	421, 535
CaiI	CAGNNNCTG	2 cut(s)	149, 539
CfoI	GCGC	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	237
Csp6I	GTAC	3 cut(s)	117, 147, 215
CspCI	CAANNNNNGTGG	2 cut(s)	46, 81
CviAII	CATG	2 cut(s)	185, 392
CviJI	RGCY	6 cut(s)	22, 105, 167, 282, 332, 386
CviKI_1	RGCY	6 cut(s)	22, 105, 167, 282, 332, 386
CviQI	GTAC	3 cut(s)	117, 147, 215
DdeI	CTNAG	3 cut(s)	85, 315, 333
DpnI	GATC	3 cut(s)	276, 360, 545
DpnII	GATC	3 cut(s)	274, 358, 543
DraIII	CACNNNGTG	1 cut(s)	510
DrdI	GACNNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	307
Eam1104I	CTCTTC	2 cut(s)	92, 289
EarI	CTCTTC	2 cut(s)	92, 289
Eco31I	GGTCTC	1 cut(s)	524
Eco47I	GGWCC	1 cut(s)	237
Eco81I	CCTNAGG	1 cut(s)	315
EcoRI	GAATTC	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	556
FaeI	CATG	2 cut(s)	188, 395
FaiI	YATR	7 cut(s)	125, 160, 186, 393, 437, 587, 589
FaqI	GGGAC	2 cut(s)	250, 295
FatI	CATG	2 cut(s)	184, 391
FauI	CCCGC	1 cut(s)	502
FblI	GTMKAC	1 cut(s)	553
Fnu4HI	GCNGC	2 cut(s)	23, 387
FokI	GGATG	2 cut(s)	157, 274
Fsp4HI	GCNGC	2 cut(s)	23, 387
FspBI	CTAG	1 cut(s)	261
FspI	TGCGCA	1 cut(s)	390
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	2 cut(s)	23, 387
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	2 cut(s)	188, 395
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HincII	GTYRAC	1 cut(s)	554
HindII	GTYRAC	1 cut(s)	554
HinfI	GANTC	1 cut(s)	452
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	3 cut(s)	182, 554, 569
Hpy188I	TCNGA	2 cut(s)	133, 295
Hpy188III	TCNNGA	3 cut(s)	362, 578, 615
Hpy8I	GTNNAC	3 cut(s)	182, 554, 569
Hpy99I	CGWCG	1 cut(s)	555
HpyAV	CCTTC	3 cut(s)	86, 265, 359
HpyCH4III	ACNGT	2 cut(s)	199, 404
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	4 cut(s)	414, 423, 504, 533
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 304, 420, 510
HpyF3I	CTNAG	3 cut(s)	85, 315, 333
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	2 cut(s)	188, 395
HspAI	GCGC	1 cut(s)	389
Kzo9I	GATC	3 cut(s)	274, 358, 543
LguI	GCTCTTC	1 cut(s)	289
LmnI	GCTCC	2 cut(s)	164, 304
LpnPI	CCDG	7 cut(s)	129, 327, 511, 519, 525, 543, 570
Lsp1109I	GCAGC	2 cut(s)	9, 373
LweI	GCATC	3 cut(s)	346, 432, 491
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	3 cut(s)	276, 360, 545
MboI	GATC	3 cut(s)	274, 358, 543
MboII	GAAGA	5 cut(s)	101, 109, 276, 391, 585
MflI	RGATCY	3 cut(s)	274, 358, 543
MluCI	AATT	6 cut(s)	152, 345, 395, 409, 599, 610
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	7 cut(s)	36, 247, 301, 310, 424, 471, 475
MseI	TTAA	1 cut(s)	348
MspR9I	CCNGG	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	558
MvnI	CGCG	1 cut(s)	444
MwoI	GCNNNNNNNGC	4 cut(s)	36, 304, 420, 510
NdeII	GATC	3 cut(s)	274, 358, 543
NlaIII	CATG	2 cut(s)	188, 395
NlaIV	GGNNCC	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	193
NsbI	TGCGCA	1 cut(s)	390
PciSI	GCTCTTC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	452
Pfl23II	CGTACG	1 cut(s)	214
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	24, 388
Psp6I	CCWGG	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	556
PspLI	CGTACG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	237
PstNI	CAGNNNCTG	2 cut(s)	149, 539
PsuI	RGATCY	3 cut(s)	274, 358, 543
RsaI	GTAC	3 cut(s)	118, 148, 216
RsaNI	GTAC	3 cut(s)	117, 147, 215
SalI	GTCGAC	1 cut(s)	552
SapI	GCTCTTC	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	2 cut(s)	23, 387
Sau3AI	GATC	3 cut(s)	274, 358, 543
Sau96I	GGNCC	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	558
SetI	ASST	6 cut(s)	148, 169, 220, 435, 463, 568
SfaNI	GCATC	3 cut(s)	346, 432, 491
SinI	GGWCC	1 cut(s)	237
Sse9I	AATT	6 cut(s)	152, 345, 395, 409, 599, 610
SsiI	CCGC	2 cut(s)	442, 495
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	556
TaaI	ACNGT	2 cut(s)	199, 404
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	3 cut(s)	340, 553, 616
TasI	AATT	6 cut(s)	152, 345, 395, 409, 599, 610
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	2 cut(s)	22, 386
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	3 cut(s)	276, 408, 504
TspGWI	ACGGA	2 cut(s)	177, 317
TspRI	CASTG	1 cut(s)	544
Van91I	CCANNNNNTGG	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	237
XapI	RAATTY	2 cut(s)	395, 599
XmiI	GTMKAC	1 cut(s)	553
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.