Rroxscaffold_7G00184890

Membrane protein of ER body-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002486
Physical Location & Seq
Forward (+)
24195664 .. 24198595
2932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00184890.1

Sequence Viewer

Length: 1113 bp
ATGGAAGCACCATTAGAAAGGCTGCCTCGCCAAAACATCAACACAGACAATACCATCAATAATGGTGGGAATGTGGTCTATTCCTTAGAAGAAGGGAAGGGAAGGCCCAGAAATGGTACTCACATGGTCTCTGATAAAAGAGCAGGTACTGAATTGCTATATGGGGCTACATCCAATAGTGGACATGGAATAGTGACTGTTGGAGTAGAGAGCGTACGTTTTGAAAAGAGTTTTGAGACCAAGCACCAAGACGAGGATACTAGGAAGCTGAAGGATCTTGGCTCTTCATCCTCCGCGCAGTCCACTGAGGAAAATGGAATGGCTAAGAGAAAAATTAAGTTGAGAGATCTTGAAGGGGTGTTTGAGAAGACGGCTGCGCATGAATTCTACTGTCCTAATTGCAAGGCTTGCATCACCGAGGTTATAGTTACACCTACTGAGCCAGCTGAACGAGTCACATGTGCTTCGTGCTTTGCTCTCCTATATCGTGCAGGCACTCAGATCTTTCGTCGACCAACGCCGACAGGGTCTAAGATGTTGGAAATCCTGAAAAGCATCATCTACGGTGGTTTAAATGAAGCAATTGCAAGCTTAAGCATTGTGGCATCCGCAGCTATGAACATTTTCGTTTTGGCACTGGCAAACTTGCTGGGCGGTCTTTTCGTCATCGGACACAATCTTTGGGACCTGAAAGCTGATCAAGTAGACAGTAAATACAAAGAAGTACTAGGGAACAAAGATAATTTCTTTTTTCATGCCCCAGTTGCCATACTCTCGTTCCTCATTTTCGGGTTAGTACCTCCTTTGGTTTATGGCTTCTCGTTCCCTCAGAGCGACGACAGCGACCTAAAGATTGCAGCAGTTGCAGCATCTTCTCTTTTATGCATCATACTTCTCGCAATTGGAAAGGCCTACATCCAGACTCCACCAAAGTACATCAAAACTGTGCTGTACTATGTCGTCATCGGGGTTGGGGCCGCCGGTGTTTCTTACTTAGTAGGTGACTTAATTGACAAACTTGTAGAGAAGCTTGGCTGGTTCAACTCAACTGTAGCTGGCTCTCTGCCTCTTCAGACTATGAGTAGAGTGAAGCCTGCATGGGAATCCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VIT1

Protein Analysis

370

Amino Acids

40.29

Weight (kDa)

7.59

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VIT1 PF01988 252 - 334 1e-08 VIT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 378
Acc36I ACCTGC 1 cut(s) 134
AccI GTMKAC 2 cut(s) 511, 705
AccII CGCG 1 cut(s) 296
AciI CCGC 4 cut(s) 294, 609, 654, 978
AclWI GGATC 1 cut(s) 282
AcsI RAATTY 1 cut(s) 383
AcuI CTGAAG 2 cut(s) 290, 1055
AfaI GTAC 7 cut(s) 118, 148, 216, 726, 798, 935, 953
AfiI CCNNNNNNNGG 2 cut(s) 113, 253
AflII CTTAAG 1 cut(s) 592
AflIII ACRYGT 1 cut(s) 458
AgsI TTSAA 3 cut(s) 224, 353, 1042
AjnI CCWGG 1 cut(s) 1106
AluBI AGCT 7 cut(s) 268, 446, 591, 614, 695, 1030, 1055
AluI AGCT 7 cut(s) 268, 446, 591, 614, 695, 1030, 1055
Alw26I GTCTC 2 cut(s) 133, 230
AlwI GGATC 1 cut(s) 282
AlwNI CAGNNNCTG 1 cut(s) 149
AoxI GGCC 3 cut(s) 104, 909, 975
ApeKI GCWGC 5 cut(s) 22, 374, 611, 857, 866
ApoI RAATTY 1 cut(s) 383
ArsI GACNNNNNNTTYG 2 cut(s) 663, 695
Asp700I GAANNNNTTC 1 cut(s) 623
AspLEI GCGC 2 cut(s) 298, 379
AspS9I GGNCC 3 cut(s) 105, 685, 975
AsuHPI GGTGA 2 cut(s) 406, 1013
AvaII GGWCC 1 cut(s) 685
BbsI GAAGAC 1 cut(s) 374
BbvI GCAGC 5 cut(s) 9, 361, 623, 869, 878
BccI CCATC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 387
BciT130I CCWGG 1 cut(s) 1108
BciVI GTATCC 1 cut(s) 250
BclI TGATCA 1 cut(s) 697
BcoDI GTCTC 2 cut(s) 133, 230
BfaI CTAG 2 cut(s) 261, 728
BfmI CTRYAG 1 cut(s) 1050
BfrI CTTAAG 1 cut(s) 592
BfuAI ACCTGC 1 cut(s) 134
BfuI GTATCC 1 cut(s) 250
BglII AGATCT 2 cut(s) 346, 501
BisI GCNGC 6 cut(s) 23, 375, 612, 858, 867, 978
BlsI GCNGC 6 cut(s) 24, 376, 613, 859, 868, 979
BmcAI AGTACT 1 cut(s) 726
Bme1390I CCNGG 1 cut(s) 1108
Bme18I GGWCC 1 cut(s) 685
BmgT120I GGNCC 3 cut(s) 105, 685, 975
BmiI GGNNCC 2 cut(s) 686, 976
BmrFI CCNGG 1 cut(s) 1108
BmrI ACTGGG 1 cut(s) 755
BmsI GCATC 5 cut(s) 420, 564, 614, 878, 894
BmuI ACTGGG 1 cut(s) 755
BpiI GAAGAC 1 cut(s) 374
BsaI GGTCTC 2 cut(s) 133, 230
BsaJI CCNNGG 1 cut(s) 417
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 253
Bse118I RCCGGY 1 cut(s) 980
Bse1I ACTGG 2 cut(s) 642, 761
BseBI CCWGG 1 cut(s) 1108
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 4 cut(s) 170, 287, 605, 915
BseLI CCNNNNNNNGG 2 cut(s) 113, 253
BseMII CTCAG 4 cut(s) 297, 429, 512, 842
BseNI ACTGG 2 cut(s) 642, 761
BseXI GCAGC 5 cut(s) 9, 361, 623, 869, 878
BseYI CCCAGC 1 cut(s) 649
BsgI GTGCAG 1 cut(s) 510
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 3 cut(s) 106, 911, 977
BsiSI CCGG 1 cut(s) 981
BsiWI CGTACG 1 cut(s) 214
BslFI GGGAC 1 cut(s) 698
BslI CCNNNNNNNGG 2 cut(s) 113, 253
BsmAI GTCTC 2 cut(s) 133, 230
BsmFI GGGAC 1 cut(s) 698
BsnI GGCC 3 cut(s) 106, 911, 977
Bso31I GGTCTC 2 cut(s) 133, 230
Bsp143I GATC 4 cut(s) 274, 346, 501, 697
BspACI CCGC 4 cut(s) 294, 609, 654, 978
BspANI GGCC 3 cut(s) 106, 911, 977
BspCNI CTCAG 4 cut(s) 298, 430, 511, 841
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 2 cut(s) 686, 976
BspMI ACCTGC 1 cut(s) 134
BspPI GGATC 1 cut(s) 282
BspQI GCTCTTC 1 cut(s) 289
BspTI CTTAAG 1 cut(s) 592
BspTNI GGTCTC 2 cut(s) 133, 230
BsrFI RCCGGY 1 cut(s) 980
BsrI ACTGG 2 cut(s) 642, 761
BssAI RCCGGY 1 cut(s) 980
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 4 cut(s) 274, 346, 501, 697
Bst2UI CCWGG 1 cut(s) 1108
Bst4CI ACNGT 6 cut(s) 199, 392, 566, 710, 946, 1051
Bst6I CTCTTC 2 cut(s) 289, 1074
BstAFI CTTAAG 1 cut(s) 592
BstAPI GCANNNNNTGC 2 cut(s) 408, 863
BstC8I GCNNGC 6 cut(s) 409, 444, 493, 589, 1057, 1095
BstDEI CTNAG 8 cut(s) 85, 306, 324, 438, 498, 531, 828, 994
BstF5I GGATG 4 cut(s) 170, 287, 605, 915
BstFNI CGCG 1 cut(s) 296
BstHHI GCGC 2 cut(s) 298, 379
BstKTI GATC 4 cut(s) 277, 349, 504, 700
BstMAI GTCTC 2 cut(s) 133, 230
BstMBI GATC 4 cut(s) 274, 346, 501, 697
BstMWI GCNNNNNNNGC 6 cut(s) 408, 611, 764, 840, 863, 866
BstNI CCWGG 1 cut(s) 1108
BstNSI RCATGY 1 cut(s) 462
BstSCI CCNGG 1 cut(s) 1106
BstSFI CTRYAG 1 cut(s) 1050
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 5 cut(s) 9, 361, 623, 869, 878
BstV2I GAAGAC 1 cut(s) 374
BstX2I RGATCY 3 cut(s) 274, 346, 501
BstYI RGATCY 3 cut(s) 274, 346, 501
BsuI GTATCC 1 cut(s) 250
BsuRI GGCC 3 cut(s) 106, 911, 977
BtsCI GGATG 4 cut(s) 170, 287, 605, 915
BtsIMutI CAGTG 2 cut(s) 303, 635
BveI ACCTGC 1 cut(s) 134
Cac8I GCNNGC 6 cut(s) 409, 444, 493, 589, 1057, 1095
CaiI CAGNNNCTG 1 cut(s) 149
CfoI GCGC 2 cut(s) 298, 379
Cfr10I RCCGGY 1 cut(s) 980
Cfr13I GGNCC 3 cut(s) 105, 685, 975
Csp6I GTAC 7 cut(s) 117, 147, 215, 725, 797, 934, 952
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviAII CATG 6 cut(s) 124, 185, 380, 459, 755, 1098
CviQI GTAC 7 cut(s) 117, 147, 215, 725, 797, 934, 952
DdeI CTNAG 8 cut(s) 85, 306, 324, 438, 498, 531, 828, 994
DpnI GATC 4 cut(s) 276, 348, 503, 699
DpnII GATC 4 cut(s) 274, 346, 501, 697
DraI TTTAAA 1 cut(s) 573
Eam1104I CTCTTC 2 cut(s) 289, 1074
EarI CTCTTC 2 cut(s) 289, 1074
Eco147I AGGCCT 1 cut(s) 911
Eco31I GGTCTC 2 cut(s) 133, 230
Eco47I GGWCC 1 cut(s) 685
Eco57I CTGAAG 2 cut(s) 290, 1055
EcoO109I RGGNCCY 1 cut(s) 685
EcoRI GAATTC 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 1106
EcoT22I ATGCAT 1 cut(s) 887
FaeI CATG 6 cut(s) 127, 188, 383, 462, 758, 1101
FaqI GGGAC 1 cut(s) 698
FatI CATG 6 cut(s) 123, 184, 379, 458, 754, 1097
FbaI TGATCA 1 cut(s) 697
FblI GTMKAC 2 cut(s) 511, 705
Fnu4HI GCNGC 6 cut(s) 23, 375, 612, 858, 867, 978
FokI GGATG 4 cut(s) 157, 274, 592, 902
Fsp4HI GCNGC 6 cut(s) 23, 375, 612, 858, 867, 978
FspBI CTAG 2 cut(s) 261, 728
FspI TGCGCA 1 cut(s) 378
GlaI GCGC 2 cut(s) 297, 378
GluI GCNGC 6 cut(s) 23, 375, 612, 858, 867, 978
GsaI CCCAGC 1 cut(s) 653
HaeIII GGCC 3 cut(s) 106, 911, 977
HapII CCGG 1 cut(s) 981
HhaI GCGC 2 cut(s) 298, 379
Hin1II CATG 6 cut(s) 127, 188, 383, 462, 758, 1101
Hin6I GCGC 2 cut(s) 296, 377
HinP1I GCGC 2 cut(s) 296, 377
HincII GTYRAC 1 cut(s) 512
HindII GTYRAC 1 cut(s) 512
HindIII AAGCTT 2 cut(s) 589, 1028
HinfI GANTC 3 cut(s) 453, 922, 1103
HpaII CCGG 1 cut(s) 981
HphI GGTGA 2 cut(s) 406, 1013
Hpy166II GTNNAC 4 cut(s) 182, 303, 512, 706
Hpy188I TCNGA 5 cut(s) 133, 501, 671, 831, 1074
Hpy188III TCNNGA 3 cut(s) 350, 547, 919
Hpy8I GTNNAC 4 cut(s) 182, 303, 512, 706
Hpy99I CGWCG 2 cut(s) 513, 839
HpyAV CCTTC 5 cut(s) 86, 91, 96, 265, 347
HpyCH4III ACNGT 6 cut(s) 199, 392, 566, 710, 946, 1051
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 8 cut(s) 402, 411, 491, 587, 857, 866, 885, 1097
HpyF10VI GCNNNNNNNGC 6 cut(s) 408, 611, 764, 840, 863, 866
HpyF3I CTNAG 8 cut(s) 85, 306, 324, 438, 498, 531, 828, 994
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 6 cut(s) 127, 188, 383, 462, 758, 1101
HspAI GCGC 2 cut(s) 296, 377
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 4 cut(s) 274, 346, 501, 697
LguI GCTCTTC 1 cut(s) 289
Lsp1109I GCAGC 5 cut(s) 9, 361, 623, 869, 878
LweI GCATC 5 cut(s) 420, 564, 614, 878, 894
MaeI CTAG 2 cut(s) 261, 728
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 4 cut(s) 193, 427, 454, 1001
MalI GATC 4 cut(s) 276, 348, 503, 699
MboI GATC 4 cut(s) 274, 346, 501, 697
MboII GAAGA 5 cut(s) 101, 276, 379, 864, 1061
MfeI CAATTG 2 cut(s) 582, 900
MflI RGATCY 3 cut(s) 274, 346, 501
MluCI AATT 8 cut(s) 152, 333, 383, 397, 582, 742, 900, 1008
MlyI GAGTC 2 cut(s) 462, 916
MmeI TCCRAC 2 cut(s) 181, 519
MnlI CCTC 9 cut(s) 36, 247, 301, 301, 412, 791, 810, 837, 1077
Mph1103I ATGCAT 1 cut(s) 887
MroXI GAANNNNTTC 1 cut(s) 623
MseI TTAA 4 cut(s) 336, 572, 593, 1007
MspA1I CMGCKG 1 cut(s) 446
MspCI CTTAAG 1 cut(s) 592
MspI CCGG 1 cut(s) 981
MspR9I CCNGG 1 cut(s) 1108
MunI CAATTG 2 cut(s) 582, 900
MvaI CCWGG 1 cut(s) 1108
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 6 cut(s) 408, 611, 764, 840, 863, 866
NdeII GATC 4 cut(s) 274, 346, 501, 697
NlaIII CATG 6 cut(s) 127, 188, 383, 462, 758, 1101
NlaIV GGNNCC 2 cut(s) 686, 976
NmuCI GTSAC 3 cut(s) 193, 454, 1001
NsbI TGCGCA 1 cut(s) 378
NsiI ATGCAT 1 cut(s) 887
NspI RCATGY 1 cut(s) 462
PceI AGGCCT 1 cut(s) 911
PciI ACATGT 1 cut(s) 458
PciSI GCTCTTC 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 623
PfeI GAWTC 1 cut(s) 1103
Pfl23II CGTACG 1 cut(s) 214
PflFI GACNNNGTC 1 cut(s) 526
PkrI GCNGC 6 cut(s) 24, 376, 613, 859, 868, 979
PleI GAGTC 2 cut(s) 461, 916
PpsI GAGTC 2 cut(s) 461, 916
PpuMI RGGWCCY 1 cut(s) 685
PscI ACATGT 1 cut(s) 458
Psp5II RGGWCCY 1 cut(s) 685
Psp6I CCWGG 1 cut(s) 1106
PspFI CCCAGC 1 cut(s) 649
PspGI CCWGG 1 cut(s) 1106
PspLI CGTACG 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 686, 976
PspPI GGNCC 3 cut(s) 105, 685, 975
PspPPI RGGWCCY 1 cut(s) 685
PstNI CAGNNNCTG 1 cut(s) 149
PsuI RGATCY 3 cut(s) 274, 346, 501
PsyI GACNNNGTC 1 cut(s) 526
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 7 cut(s) 118, 148, 216, 726, 798, 935, 953
RsaNI GTAC 7 cut(s) 117, 147, 215, 725, 797, 934, 952
SalI GTCGAC 1 cut(s) 510
SapI GCTCTTC 1 cut(s) 289
SaqAI TTAA 4 cut(s) 336, 572, 593, 1007
SatI GCNGC 6 cut(s) 23, 375, 612, 858, 867, 978
Sau3AI GATC 4 cut(s) 274, 346, 501, 697
Sau96I GGNCC 3 cut(s) 105, 685, 975
ScaI AGTACT 1 cut(s) 726
SchI GAGTC 2 cut(s) 462, 916
ScrFI CCNGG 1 cut(s) 1108
SfaNI GCATC 5 cut(s) 420, 564, 614, 878, 894
SfcI CTRYAG 1 cut(s) 1050
SgrAI CRCCGGYG 1 cut(s) 980
SinI GGWCC 1 cut(s) 685
SmlI CTYRAG 1 cut(s) 592
SmoI CTYRAG 1 cut(s) 592
Sse9I AATT 8 cut(s) 152, 333, 383, 397, 582, 742, 900, 1008
SseBI AGGCCT 1 cut(s) 911
SsiI CCGC 4 cut(s) 294, 609, 654, 978
SspMI CTAG 2 cut(s) 261, 728
StuI AGGCCT 1 cut(s) 911
StyD4I CCNGG 1 cut(s) 1106
TaaI ACNGT 6 cut(s) 199, 392, 566, 710, 946, 1051
TaiI ACGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 511
TasI AATT 8 cut(s) 152, 333, 383, 397, 582, 742, 900, 1008
TatI WGTACW 3 cut(s) 724, 933, 951
TauI GCSGC 1 cut(s) 980
TfiI GAWTC 1 cut(s) 1103
Tru1I TTAA 4 cut(s) 336, 572, 593, 1007
Tru9I TTAA 4 cut(s) 336, 572, 593, 1007
TscAI CASTG 2 cut(s) 310, 642
TseFI GTSAC 3 cut(s) 193, 454, 1001
TseI GCWGC 5 cut(s) 22, 374, 611, 857, 866
Tsp45I GTSAC 3 cut(s) 193, 454, 1001
TspDTI ATGAA 5 cut(s) 276, 396, 591, 632, 743
TspRI CASTG 2 cut(s) 310, 642
Tth111I GACNNNGTC 1 cut(s) 526
Vha464I CTTAAG 1 cut(s) 592
VpaK11BI GGWCC 1 cut(s) 685
XapI RAATTY 1 cut(s) 383
XceI RCATGY 1 cut(s) 462
XmiI GTMKAC 2 cut(s) 511, 705
XmnI GAANNNNTTC 1 cut(s) 623
XspI CTAG 2 cut(s) 261, 728
ZrmI AGTACT 1 cut(s) 726
Zsp2I ATGCAT 1 cut(s) 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.