Rh6CG276200

Membrane protein of ER body-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002486
Physical Location & Seq
Reverse (-)
45218003 .. 45221923
3921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG276200.1

Sequence Viewer

Length: 1227 bp
ATGATAAGAGTTTCTAACTTTTCTGATAAATTGTTTAATTTGCTGAATGGGCCCGTTTCAGGTACTGAATTGCTATACGGAGCTACATCCAATAGTGGACATGGAATAGTGACTGTTGGAGTAGAGAGCGTACGTTTTCAAAAGAGTGTTGAGACCAAGCACCAAGACGAGGATACTAGGAAGTTGAAGGATCTTGGCTCTTCATCCTCCGAGCAGACGGAGCAGTCCCCTGAGGAAAATGGAGTGGCTAAGCATCGAAAAATTAAGTTGAGAGATCTTGAAGGGGTGTTTGAGAAGACGGCTGCGCATGAATTCTACTGTCCTAATTGCAATGCTTGCATCACCGAGGTTATAGTCCGCGATAGAGAAGCAAAACCTCCTACCCCACCACTTATTGAGCCAGATGAACCAAAACCTCCTACCAAACCACTTATTGAGCCAGAGCCAGATGAACCAAAACCTCCTACTCCACCGCTTATTGTGCCAGATGAACCGGCCGTCAGATGCACTTCGTGCTTTGGTCTCCTATTTCCTGCAGAACCTACACAGGGCACAACAGTTATTACTATCACACCGCCGGAACAAACGCCGGCAGGGTCTGAATTACCACGAGATGCTAATAAGATGTTAGAAATCCTCAAAAGCATCGTTTACGGTGGTTTAAATGAAGCAATTGCAAGCTTAAGCATTGTGGCATCTGCAGCTAGTACTGATACTGCCACATTGAACATTTTCGTTTTGGCACTCGCAAACTTGCTGGGTGGTCTTTTCGTCATCGGACACAATCTCTGGGACCTGAAAGCTGATCAAGTAGACAGTAAATACAAAGAAGTACTAGGGAACAAAGATAATTTCTTTTTTCATGTCCCGGTTGCCATACTCTCGTTCCTCATTTTCGGGTTAGTACCTCCTTTGGTTTATGGCTTCTCGTTCTCTCAGAGCGACGACAGCGACCTAAAGATTGCAGCAGTTGCAGCATCTTCTATTTTATGCATCATACTTCTCGCAATTGGAAAGGCTTACATCCAGACGCCACCAGAGTACATCAAAACTGTGCTGTACTATATCGTCATAGGGGTTGGCGCCGCCGGTGTTTCTTACTTGGTAGGTGACTTAATTGACAAACTTGTAGAGAAGCTTGGCTGGTTCAACTCAACTGTAGCTGGCTCTCTGCCTCTTCCTCATCTGACTATGAGTACAGTGAAACCTGCATGGGAATCCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VIT1

Protein Analysis

408

Amino Acids

44.17

Weight (kDa)

5.03

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VIT1 PF01988 293 - 370 1.4e-06 VIT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 223
Acc16I TGCGCA 1 cut(s) 306
Acc36I ACCTGC 1 cut(s) 1216
AccB1I GGYRCC 1 cut(s) 1082
AccI GTMKAC 1 cut(s) 813
AccII CGCG 1 cut(s) 360
AciI CCGC 4 cut(s) 358, 473, 575, 1086
AclWI GGATC 1 cut(s) 198
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 1 cut(s) 311
AcyI GRCGYC 2 cut(s) 1031, 1083
AdeI CACNNNGTG 1 cut(s) 513
AfaI GTAC 8 cut(s) 64, 132, 709, 834, 906, 1043, 1061, 1198
AfiI CCNNNNNNNGG 3 cut(s) 59, 169, 548
AflII CTTAAG 1 cut(s) 682
AgsI TTSAA 5 cut(s) 140, 187, 281, 727, 1150
AjnI CCWGG 1 cut(s) 1220
AluBI AGCT 6 cut(s) 83, 681, 704, 803, 1138, 1163
AluI AGCT 6 cut(s) 83, 681, 704, 803, 1138, 1163
Alw26I GTCTC 2 cut(s) 146, 527
AlwI GGATC 1 cut(s) 198
AlwNI CAGNNNCTG 2 cut(s) 65, 599
AoxI GGCC 2 cut(s) 50, 495
ApaI GGGCCC 1 cut(s) 54
ApeKI GCWGC 4 cut(s) 302, 701, 965, 974
ApoI RAATTY 1 cut(s) 311
Asp700I GAANNNNTTC 1 cut(s) 731
AspLEI GCGC 2 cut(s) 307, 1085
AspS9I GGNCC 3 cut(s) 50, 51, 793
AsuC2I CCSGG 1 cut(s) 869
AsuHPI GGTGA 2 cut(s) 334, 1121
AvaII GGWCC 1 cut(s) 793
AxyI CCTNAGG 1 cut(s) 231
BaeGI GKGCMC 2 cut(s) 54, 554
BanI GGYRCC 1 cut(s) 1082
BanII GRGCYC 1 cut(s) 54
BauI CACGAG 1 cut(s) 609
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 4 cut(s) 289, 713, 977, 986
BceAI ACGGC 2 cut(s) 315, 482
BciT130I CCWGG 1 cut(s) 1222
BciVI GTATCC 1 cut(s) 166
BclI TGATCA 1 cut(s) 805
BcnI CCSGG 1 cut(s) 869
BcoDI GTCTC 2 cut(s) 146, 527
BfaI CTAG 3 cut(s) 177, 705, 836
BfmI CTRYAG 3 cut(s) 534, 699, 1158
BfoI RGCGCY 1 cut(s) 1086
BfrI CTTAAG 1 cut(s) 682
BfuAI ACCTGC 1 cut(s) 1216
BfuI GTATCC 1 cut(s) 166
BglII AGATCT 1 cut(s) 274
BisI GCNGC 5 cut(s) 303, 702, 966, 975, 1086
BlpI GCTNAGC 1 cut(s) 249
BlsI GCNGC 5 cut(s) 304, 703, 967, 976, 1087
BmcAI AGTACT 2 cut(s) 709, 834
Bme1390I CCNGG 2 cut(s) 869, 1222
Bme18I GGWCC 1 cut(s) 793
BmgT120I GGNCC 3 cut(s) 50, 51, 793
BmiI GGNNCC 3 cut(s) 52, 794, 1084
BmrFI CCNGG 2 cut(s) 869, 1222
BmsI GCATC 8 cut(s) 262, 348, 494, 604, 654, 704, 986, 1002
BpiI GAAGAC 1 cut(s) 302
Bpu1102I GCTNAGC 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 869
BsaHI GRCGYC 2 cut(s) 1031, 1083
BsaI GGTCTC 2 cut(s) 146, 527
BsaJI CCNNGG 1 cut(s) 345
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 169, 548
Bse118I RCCGGY 3 cut(s) 493, 589, 1088
Bse21I CCTNAGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 337
BseBI CCWGG 1 cut(s) 1222
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 3 cut(s) 86, 203, 1023
BseLI CCNNNNNNNGG 3 cut(s) 59, 169, 548
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 2 cut(s) 222, 950
BseSI GKGCMC 2 cut(s) 54, 554
BseX3I CGGCCG 1 cut(s) 495
BseXI GCAGC 4 cut(s) 289, 713, 977, 986
BseYI CCCAGC 1 cut(s) 757
Bsh1236I CGCG 1 cut(s) 360
Bsh1285I CGRYCG 1 cut(s) 498
BshFI GGCC 2 cut(s) 52, 497
BshNI GGYRCC 1 cut(s) 1082
BsiEI CGRYCG 1 cut(s) 498
BsiSI CCGG 5 cut(s) 494, 578, 590, 869, 1089
BsiWI CGTACG 1 cut(s) 130
BslFI GGGAC 3 cut(s) 211, 806, 851
BslI CCNNNNNNNGG 3 cut(s) 59, 169, 548
BsmAI GTCTC 2 cut(s) 146, 527
BsmFI GGGAC 3 cut(s) 211, 806, 851
BsnI GGCC 2 cut(s) 52, 497
Bso31I GGTCTC 2 cut(s) 146, 527
Bsp120I GGGCCC 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 54, 554
Bsp143I GATC 3 cut(s) 190, 274, 805
Bsp1720I GCTNAGC 1 cut(s) 249
BspACI CCGC 4 cut(s) 358, 473, 575, 1086
BspANI GGCC 2 cut(s) 52, 497
BspCNI CTCAG 2 cut(s) 223, 949
BspFNI CGCG 1 cut(s) 360
BspLI GGNNCC 3 cut(s) 52, 794, 1084
BspMAI CTGCAG 2 cut(s) 538, 703
BspMI ACCTGC 1 cut(s) 1216
BspPI GGATC 1 cut(s) 198
BspQI GCTCTTC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 1082
BspTI CTTAAG 1 cut(s) 682
BspTNI GGTCTC 2 cut(s) 146, 527
BsrDI GCAATG 1 cut(s) 337
BsrFI RCCGGY 3 cut(s) 493, 589, 1088
BssAI RCCGGY 3 cut(s) 493, 589, 1088
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 3 cut(s) 190, 274, 805
BssNI GRCGYC 2 cut(s) 1031, 1083
BssSI CACGAG 1 cut(s) 609
Bst2BI CACGAG 1 cut(s) 609
Bst2UI CCWGG 1 cut(s) 1222
Bst4CI ACNGT 8 cut(s) 115, 320, 559, 656, 818, 1054, 1159, 1201
Bst6I CTCTTC 2 cut(s) 205, 1182
BstACI GRCGYC 2 cut(s) 1031, 1083
BstAFI CTTAAG 1 cut(s) 682
BstAPI GCANNNNNTGC 3 cut(s) 336, 513, 971
BstC8I GCNNGC 4 cut(s) 337, 591, 679, 1165
BstDEI CTNAG 3 cut(s) 231, 249, 936
BstF5I GGATG 3 cut(s) 86, 203, 1023
BstFNI CGCG 1 cut(s) 360
BstH2I RGCGCY 1 cut(s) 1086
BstHHI GCGC 2 cut(s) 307, 1085
BstKTI GATC 3 cut(s) 193, 277, 808
BstMAI GTCTC 2 cut(s) 146, 527
BstMBI GATC 3 cut(s) 190, 274, 805
BstMCI CGRYCG 1 cut(s) 498
BstMWI GCNNNNNNNGC 9 cut(s) 49, 220, 336, 481, 513, 701, 948, 971, 974
BstNI CCWGG 1 cut(s) 1222
BstSCI CCNGG 2 cut(s) 867, 1220
BstSFI CTRYAG 3 cut(s) 534, 699, 1158
BstSLI GKGCMC 2 cut(s) 54, 554
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 4 cut(s) 289, 713, 977, 986
BstV2I GAAGAC 1 cut(s) 302
BstX2I RGATCY 2 cut(s) 190, 274
BstYI RGATCY 2 cut(s) 190, 274
BstZI CGGCCG 1 cut(s) 495
Bsu36I CCTNAGG 1 cut(s) 231
BsuI GTATCC 1 cut(s) 166
BsuRI GGCC 2 cut(s) 52, 497
BtsCI GGATG 3 cut(s) 86, 203, 1023
BtsIMutI CAGTG 1 cut(s) 1206
BveI ACCTGC 1 cut(s) 1216
Cac8I GCNNGC 4 cut(s) 337, 591, 679, 1165
CaiI CAGNNNCTG 2 cut(s) 65, 599
CfoI GCGC 2 cut(s) 307, 1085
Cfr10I RCCGGY 3 cut(s) 493, 589, 1088
Cfr13I GGNCC 3 cut(s) 50, 51, 793
CseI GACGC 1 cut(s) 1039
Csp6I GTAC 8 cut(s) 63, 131, 708, 833, 905, 1042, 1060, 1197
CviAII CATG 4 cut(s) 101, 308, 863, 1212
CviQI GTAC 8 cut(s) 63, 131, 708, 833, 905, 1042, 1060, 1197
DdeI CTNAG 3 cut(s) 231, 249, 936
DinI GGCGCC 1 cut(s) 1084
DpnI GATC 3 cut(s) 192, 276, 807
DpnII GATC 3 cut(s) 190, 274, 805
DraI TTTAAA 1 cut(s) 663
DraIII CACNNNGTG 1 cut(s) 513
DrdI GACNNNNNNGTC 1 cut(s) 223
DseDI GACNNNNNNGTC 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 495
EagI CGGCCG 1 cut(s) 495
Eam1104I CTCTTC 2 cut(s) 205, 1182
EarI CTCTTC 2 cut(s) 205, 1182
EclXI CGGCCG 1 cut(s) 495
Eco24I GRGCYC 1 cut(s) 54
Eco31I GGTCTC 2 cut(s) 146, 527
Eco47I GGWCC 1 cut(s) 793
Eco52I CGGCCG 1 cut(s) 495
Eco81I CCTNAGG 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 793
EcoRI GAATTC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 1220
EcoT22I ATGCAT 1 cut(s) 995
EcoT38I GRGCYC 1 cut(s) 54
EgeI GGCGCC 1 cut(s) 1084
EheI GGCGCC 1 cut(s) 1084
FaeI CATG 4 cut(s) 104, 311, 866, 1215
FaqI GGGAC 3 cut(s) 211, 806, 851
FatI CATG 4 cut(s) 100, 307, 862, 1211
FbaI TGATCA 1 cut(s) 805
FblI GTMKAC 1 cut(s) 813
Fnu4HI GCNGC 5 cut(s) 303, 702, 966, 975, 1086
FokI GGATG 3 cut(s) 73, 190, 1010
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 5 cut(s) 303, 702, 966, 975, 1086
FspBI CTAG 3 cut(s) 177, 705, 836
FspI TGCGCA 1 cut(s) 306
GlaI GCGC 2 cut(s) 306, 1084
GluI GCNGC 5 cut(s) 303, 702, 966, 975, 1086
GsaI CCCAGC 1 cut(s) 761
HaeII RGCGCY 1 cut(s) 1086
HaeIII GGCC 2 cut(s) 52, 497
HapII CCGG 5 cut(s) 494, 578, 590, 869, 1089
HgaI GACGC 1 cut(s) 1039
HhaI GCGC 2 cut(s) 307, 1085
Hin1I GRCGYC 2 cut(s) 1031, 1083
Hin1II CATG 4 cut(s) 104, 311, 866, 1215
Hin6I GCGC 2 cut(s) 305, 1083
HinP1I GCGC 2 cut(s) 305, 1083
HindIII AAGCTT 2 cut(s) 679, 1136
HinfI GANTC 1 cut(s) 1217
HpaII CCGG 5 cut(s) 494, 578, 590, 869, 1089
HphI GGTGA 2 cut(s) 334, 1121
Hpy166II GTNNAC 3 cut(s) 98, 652, 814
Hpy188I TCNGA 7 cut(s) 25, 211, 503, 601, 779, 939, 1188
Hpy188III TCNNGA 2 cut(s) 278, 1027
Hpy8I GTNNAC 3 cut(s) 98, 652, 814
Hpy99I CGWCG 1 cut(s) 947
HpyAV CCTTC 2 cut(s) 181, 275
HpyCH4III ACNGT 8 cut(s) 115, 320, 559, 656, 818, 1054, 1159, 1201
HpyCH4IV ACGT 1 cut(s) 133
HpyF10VI GCNNNNNNNGC 9 cut(s) 49, 220, 336, 481, 513, 701, 948, 971, 974
HpyF3I CTNAG 3 cut(s) 231, 249, 936
HpySE526I ACGT 1 cut(s) 133
Hsp92I GRCGYC 2 cut(s) 1031, 1083
Hsp92II CATG 4 cut(s) 104, 311, 866, 1215
HspAI GCGC 2 cut(s) 305, 1083
KasI GGCGCC 1 cut(s) 1082
KroI GCCGGC 1 cut(s) 589
KroNI GCCGGC 1 cut(s) 591
Ksp22I TGATCA 1 cut(s) 805
Kzo9I GATC 3 cut(s) 190, 274, 805
LguI GCTCTTC 1 cut(s) 205
LmnI GCTCC 2 cut(s) 80, 220
Lsp1109I GCAGC 4 cut(s) 289, 713, 977, 986
LweI GCATC 8 cut(s) 262, 348, 494, 604, 654, 704, 986, 1002
MaeI CTAG 3 cut(s) 177, 705, 836
MaeII ACGT 1 cut(s) 133
MaeIII GTNAC 2 cut(s) 109, 1109
MalI GATC 3 cut(s) 192, 276, 807
MboI GATC 3 cut(s) 190, 274, 805
MboII GAAGA 4 cut(s) 192, 307, 972, 1169
MfeI CAATTG 2 cut(s) 672, 1008
MflI RGATCY 2 cut(s) 190, 274
MhlI GDGCHC 2 cut(s) 54, 554
Mly113I GGCGCC 1 cut(s) 1083
MmeI TCCRAC 1 cut(s) 97
Mph1103I ATGCAT 1 cut(s) 995
MroNI GCCGGC 1 cut(s) 589
MroXI GAANNNNTTC 1 cut(s) 731
MseI TTAA 5 cut(s) 36, 264, 662, 683, 1115
MspCI CTTAAG 1 cut(s) 682
MspI CCGG 5 cut(s) 494, 578, 590, 869, 1089
MspR9I CCNGG 2 cut(s) 869, 1222
MunI CAATTG 2 cut(s) 672, 1008
MvaI CCWGG 1 cut(s) 1222
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 9 cut(s) 49, 220, 336, 481, 513, 701, 948, 971, 974
NaeI GCCGGC 1 cut(s) 591
NarI GGCGCC 1 cut(s) 1083
NciI CCSGG 1 cut(s) 869
NdeII GATC 3 cut(s) 190, 274, 805
NgoMIV GCCGGC 1 cut(s) 589
NlaIII CATG 4 cut(s) 104, 311, 866, 1215
NlaIV GGNNCC 3 cut(s) 52, 794, 1084
NmuCI GTSAC 2 cut(s) 109, 1109
NsbI TGCGCA 1 cut(s) 306
NsiI ATGCAT 1 cut(s) 995
PciSI GCTCTTC 1 cut(s) 205
PdiI GCCGGC 1 cut(s) 591
PdmI GAANNNNTTC 1 cut(s) 731
PfeI GAWTC 1 cut(s) 1217
Pfl23II CGTACG 1 cut(s) 130
PkrI GCNGC 5 cut(s) 304, 703, 967, 976, 1087
PluTI GGCGCC 1 cut(s) 1086
PpuMI RGGWCCY 1 cut(s) 793
Psp5II RGGWCCY 1 cut(s) 793
Psp6I CCWGG 1 cut(s) 1220
PspFI CCCAGC 1 cut(s) 757
PspGI CCWGG 1 cut(s) 1220
PspLI CGTACG 1 cut(s) 130
PspN4I GGNNCC 3 cut(s) 52, 794, 1084
PspOMI GGGCCC 1 cut(s) 50
PspPI GGNCC 3 cut(s) 50, 51, 793
PspPPI RGGWCCY 1 cut(s) 793
PstI CTGCAG 2 cut(s) 538, 703
PstNI CAGNNNCTG 2 cut(s) 65, 599
PsuI RGATCY 2 cut(s) 190, 274
RsaI GTAC 8 cut(s) 64, 132, 709, 834, 906, 1043, 1061, 1198
RsaNI GTAC 8 cut(s) 63, 131, 708, 833, 905, 1042, 1060, 1197
SapI GCTCTTC 1 cut(s) 205
SaqAI TTAA 5 cut(s) 36, 264, 662, 683, 1115
SatI GCNGC 5 cut(s) 303, 702, 966, 975, 1086
Sau3AI GATC 3 cut(s) 190, 274, 805
Sau96I GGNCC 3 cut(s) 50, 51, 793
ScaI AGTACT 2 cut(s) 709, 834
ScrFI CCNGG 2 cut(s) 869, 1222
SduI GDGCHC 2 cut(s) 54, 554
SfaNI GCATC 8 cut(s) 262, 348, 494, 604, 654, 704, 986, 1002
SfcI CTRYAG 3 cut(s) 534, 699, 1158
SfoI GGCGCC 1 cut(s) 1084
SgrAI CRCCGGYG 1 cut(s) 1088
SinI GGWCC 1 cut(s) 793
SmlI CTYRAG 1 cut(s) 682
SmoI CTYRAG 1 cut(s) 682
SsiI CCGC 4 cut(s) 358, 473, 575, 1086
SspDI GGCGCC 1 cut(s) 1082
SspMI CTAG 3 cut(s) 177, 705, 836
StyD4I CCNGG 2 cut(s) 867, 1220
TaaI ACNGT 8 cut(s) 115, 320, 559, 656, 818, 1054, 1159, 1201
TaiI ACGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 256
TatI WGTACW 5 cut(s) 707, 832, 1041, 1059, 1196
TauI GCSGC 1 cut(s) 1088
TfiI GAWTC 1 cut(s) 1217
Tru1I TTAA 5 cut(s) 36, 264, 662, 683, 1115
Tru9I TTAA 5 cut(s) 36, 264, 662, 683, 1115
TscAI CASTG 1 cut(s) 1206
TseFI GTSAC 2 cut(s) 109, 1109
TseI GCWGC 4 cut(s) 302, 701, 965, 974
Tsp45I GTSAC 2 cut(s) 109, 1109
TspDTI ATGAA 7 cut(s) 192, 324, 420, 465, 504, 681, 851
TspGWI ACGGA 2 cut(s) 93, 233
TspRI CASTG 1 cut(s) 1206
Vha464I CTTAAG 1 cut(s) 682
VpaK11BI GGWCC 1 cut(s) 793
XapI RAATTY 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 813
XmnI GAANNNNTTC 1 cut(s) 731
XspI CTAG 3 cut(s) 177, 705, 836
ZrmI AGTACT 2 cut(s) 709, 834
Zsp2I ATGCAT 1 cut(s) 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.