RLG00000012766

Membrane protein of ER body-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002486
Physical Location & Seq
Forward (+)
22180087 .. 22182796
2710 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012766

Sequence Viewer

Length: 1146 bp
ATGAAAATGGAAGCACCATTAGAAAGGCTGCCTCGCCAAAACAGCAACACAGACATTACCATCAATAATGGCGGGAATGTTGTCTATTCCTTAGAAGAAGGGAAGGGACGCACCAGAAATGGTACTCACATGATCTCTGATAAAAGAGCAGGTACTGAATTGCTATATGGGGCTACATCCAGTAGTGGACATGGAATAGTGACTGCTGGAGTAGAGAGCGTACGTTTTGAAAAGAGTTTTGAGACCAAGCACCAAGACGAGGATACTAGGAAGCTGAAGGATCTTGGCTCTTCATCCTCCAAGCAGTCCACTGAGGAAAATGGAATGGCTAAGAGAAAAATTAAGTTGAGAGATCTTGAAGGGGTGGTTGAGAAGACGGCTGCGCATGAATTCTACTGTCCTAATTGCAAGGCTTGCATCACCGAGGTTATAGTCCGCGATGCACCTACTGAGCCAGATGAACCAGTCACATGCACTTCGTGCTTTGCTATCCTATTTCCTCCAGGCACTCGGATCTTTTGTCGACCAGAGCAAGCTAATAAGATGTTGGAAATCCTGAAAAGCATCATCTACGGTGGTTTAAATGAAGCAATTGCAAGCTTAAGCATTGTGGCATCCGCAGCTAGTACTGACACTGCCACATTGAACATTTTCGTTTTGGCATTGGCAAACTTGCTGGGTGGTCTTTTCATCATCGGACACAATCTTTGGGACCTGAAAGCTGATCAAGTAGACAATAAATACAAAGAAGTACTAGGGAACAAAGATAATTTCTTTTTTCATGCCCCTGTTGCCATAATCTCTTTCCTCATTTTCGGGTTAGTACCTCCTTTGGTCTATGGCTTCTCGTTCCCTCAGAGCGACGACAGCGACCTAAAGATTGCCGCAGTTGCAGCATCTTCTCTTTTATGCATCATACTTCTCGCAATTGGAAAGGCTTACATCCAGACTCCACCAAAGTACATCAAAACTGTGCTGTACTATGTCTTCATGGGGGTTGGGGCTGCCGGTCTTTCTTACTTAGTAGGTGACTTGATCGACAAACTTGTAGAGAAGCTTGGCTGGTTCAACTCAACTGTAGCTAGCTCTCTGCCTCTTCCTCATCAGACTATGAGTACAGTGAAGCCTGCATGGGAATCCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VIT1

Protein Analysis

382

Amino Acids

41.57

Weight (kDa)

6.2

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VIT1 PF01988 261 - 343 4.5e-08 VIT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 384
Acc36I ACCTGC 1 cut(s) 140
AccI GTMKAC 2 cut(s) 523, 732
AccII CGCG 1 cut(s) 438
AciI CCGC 4 cut(s) 72, 436, 618, 885
AclWI GGATC 2 cut(s) 288, 521
AcsI RAATTY 1 cut(s) 389
AcuI CTGAAG 1 cut(s) 296
AdeI CACNNNGTG 1 cut(s) 480
AfaI GTAC 9 cut(s) 124, 154, 222, 628, 753, 825, 962, 980, 1117
AfiI CCNNNNNNNGG 1 cut(s) 259
AflII CTTAAG 1 cut(s) 601
AgsI TTSAA 4 cut(s) 230, 359, 646, 1069
AjnI CCWGG 2 cut(s) 502, 1139
AluBI AGCT 8 cut(s) 274, 536, 600, 623, 722, 1057, 1082, 1086
AluI AGCT 8 cut(s) 274, 536, 600, 623, 722, 1057, 1082, 1086
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 2 cut(s) 288, 521
AlwNI CAGNNNCTG 1 cut(s) 155
ApeKI GCWGC 5 cut(s) 28, 380, 620, 893, 1004
ApoI RAATTY 1 cut(s) 389
ArsI GACNNNNNNTTYG 2 cut(s) 690, 722
Asp700I GAANNNNTTC 1 cut(s) 650
AspLEI GCGC 1 cut(s) 385
AspS9I GGNCC 1 cut(s) 712
AsuHPI GGTGA 2 cut(s) 412, 1040
AsuNHI GCTAGC 1 cut(s) 1082
AvaII GGWCC 1 cut(s) 712
BarI GAAGNNNNNNTAC 2 cut(s) 971, 1003
BbsI GAAGAC 2 cut(s) 380, 979
BbvI GCAGC 5 cut(s) 15, 367, 632, 905, 991
BccI CCATC 1 cut(s) 68
BceAI ACGGC 1 cut(s) 393
BciT130I CCWGG 2 cut(s) 504, 1141
BciVI GTATCC 1 cut(s) 256
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 4 cut(s) 267, 624, 755, 1083
BfmI CTRYAG 1 cut(s) 1077
BfrI CTTAAG 1 cut(s) 601
BfuAI ACCTGC 1 cut(s) 140
BfuI GTATCC 1 cut(s) 256
BglII AGATCT 1 cut(s) 352
BisI GCNGC 6 cut(s) 29, 381, 621, 885, 894, 1005
BlsI GCNGC 6 cut(s) 30, 382, 622, 886, 895, 1006
BmcAI AGTACT 2 cut(s) 628, 753
Bme1390I CCNGG 2 cut(s) 504, 1141
Bme18I GGWCC 1 cut(s) 712
BmgT120I GGNCC 1 cut(s) 712
BmiI GGNNCC 1 cut(s) 713
BmrFI CCNGG 2 cut(s) 504, 1141
BmsI GCATC 6 cut(s) 426, 430, 573, 623, 905, 921
BmtI GCTAGC 1 cut(s) 1086
BpiI GAAGAC 2 cut(s) 380, 979
BpmI CTGGAG 2 cut(s) 228, 486
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 423
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse118I RCCGGY 1 cut(s) 1007
Bse1I ACTGG 2 cut(s) 180, 464
BseBI CCWGG 2 cut(s) 504, 1141
BseDI CCNNGG 1 cut(s) 423
BseGI GGATG 4 cut(s) 176, 293, 614, 942
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 3 cut(s) 303, 441, 869
BseNI ACTGG 2 cut(s) 180, 464
BseXI GCAGC 5 cut(s) 15, 367, 632, 905, 991
BseYI CCCAGC 1 cut(s) 676
Bsh1236I CGCG 1 cut(s) 438
BsiSI CCGG 1 cut(s) 1008
BsiWI CGTACG 1 cut(s) 220
BslFI GGGAC 2 cut(s) 120, 725
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 236
BsmFI GGGAC 2 cut(s) 120, 725
Bso31I GGTCTC 1 cut(s) 236
Bsp143I GATC 6 cut(s) 132, 280, 352, 513, 724, 1035
BspACI CCGC 4 cut(s) 72, 436, 618, 885
BspCNI CTCAG 3 cut(s) 304, 442, 868
BspFNI CGCG 1 cut(s) 438
BspLI GGNNCC 1 cut(s) 713
BspMI ACCTGC 1 cut(s) 140
BspOI GCTAGC 1 cut(s) 1086
BspPI GGATC 2 cut(s) 288, 521
BspQI GCTCTTC 1 cut(s) 295
BspTI CTTAAG 1 cut(s) 601
BspTNI GGTCTC 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 1007
BsrI ACTGG 2 cut(s) 180, 464
BssAI RCCGGY 1 cut(s) 1007
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 6 cut(s) 132, 280, 352, 513, 724, 1035
Bst2UI CCWGG 2 cut(s) 504, 1141
Bst4CI ACNGT 5 cut(s) 398, 575, 973, 1078, 1120
Bst6I CTCTTC 2 cut(s) 295, 1101
BstAFI CTTAAG 1 cut(s) 601
BstAPI GCANNNNNTGC 2 cut(s) 414, 480
BstC8I GCNNGC 5 cut(s) 415, 534, 598, 1084, 1128
BstDEI CTNAG 6 cut(s) 91, 312, 330, 450, 855, 1021
BstF5I GGATG 4 cut(s) 176, 293, 614, 942
BstFNI CGCG 1 cut(s) 438
BstHHI GCGC 1 cut(s) 385
BstKTI GATC 6 cut(s) 135, 283, 355, 516, 727, 1038
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 6 cut(s) 132, 280, 352, 513, 724, 1035
BstMWI GCNNNNNNNGC 8 cut(s) 42, 414, 480, 620, 791, 867, 890, 893
BstNI CCWGG 2 cut(s) 504, 1141
BstNSI RCATGY 1 cut(s) 474
BstSCI CCNGG 2 cut(s) 502, 1139
BstSFI CTRYAG 1 cut(s) 1077
BstUI CGCG 1 cut(s) 438
BstV1I GCAGC 5 cut(s) 15, 367, 632, 905, 991
BstV2I GAAGAC 2 cut(s) 380, 979
BstX2I RGATCY 3 cut(s) 280, 352, 513
BstYI RGATCY 3 cut(s) 280, 352, 513
BsuI GTATCC 1 cut(s) 256
BtgZI GCGATG 1 cut(s) 453
BtsCI GGATG 4 cut(s) 176, 293, 614, 942
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 3 cut(s) 309, 633, 1125
BveI ACCTGC 1 cut(s) 140
Cac8I GCNNGC 5 cut(s) 415, 534, 598, 1084, 1128
CaiI CAGNNNCTG 1 cut(s) 155
CfoI GCGC 1 cut(s) 385
Cfr10I RCCGGY 1 cut(s) 1007
Cfr13I GGNCC 1 cut(s) 712
CseI GACGC 1 cut(s) 117
Csp6I GTAC 9 cut(s) 123, 153, 221, 627, 752, 824, 961, 979, 1116
CviAII CATG 7 cut(s) 130, 191, 386, 471, 782, 991, 1131
CviQI GTAC 9 cut(s) 123, 153, 221, 627, 752, 824, 961, 979, 1116
DdeI CTNAG 6 cut(s) 91, 312, 330, 450, 855, 1021
DpnI GATC 6 cut(s) 134, 282, 354, 515, 726, 1037
DpnII GATC 6 cut(s) 132, 280, 352, 513, 724, 1035
DraI TTTAAA 1 cut(s) 582
DraIII CACNNNGTG 1 cut(s) 480
Eam1104I CTCTTC 2 cut(s) 295, 1101
EarI CTCTTC 2 cut(s) 295, 1101
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 712
Eco57I CTGAAG 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 712
EcoRI GAATTC 1 cut(s) 389
EcoRII CCWGG 2 cut(s) 502, 1139
EcoT22I ATGCAT 1 cut(s) 914
FaeI CATG 7 cut(s) 133, 194, 389, 474, 785, 994, 1134
FaqI GGGAC 2 cut(s) 120, 725
FatI CATG 7 cut(s) 129, 190, 385, 470, 781, 990, 1130
FauI CCCGC 1 cut(s) 65
FbaI TGATCA 1 cut(s) 724
FblI GTMKAC 2 cut(s) 523, 732
Fnu4HI GCNGC 6 cut(s) 29, 381, 621, 885, 894, 1005
FokI GGATG 4 cut(s) 163, 280, 601, 929
Fsp4HI GCNGC 6 cut(s) 29, 381, 621, 885, 894, 1005
FspBI CTAG 4 cut(s) 267, 624, 755, 1083
FspI TGCGCA 1 cut(s) 384
GlaI GCGC 1 cut(s) 384
GluI GCNGC 6 cut(s) 29, 381, 621, 885, 894, 1005
GsaI CCCAGC 1 cut(s) 680
GsuI CTGGAG 2 cut(s) 228, 486
HapII CCGG 1 cut(s) 1008
HgaI GACGC 1 cut(s) 117
HhaI GCGC 1 cut(s) 385
Hin1II CATG 7 cut(s) 133, 194, 389, 474, 785, 994, 1134
Hin6I GCGC 1 cut(s) 383
HinP1I GCGC 1 cut(s) 383
HincII GTYRAC 1 cut(s) 524
HindII GTYRAC 1 cut(s) 524
HindIII AAGCTT 2 cut(s) 598, 1055
HinfI GANTC 2 cut(s) 949, 1136
HpaII CCGG 1 cut(s) 1008
HphI GGTGA 2 cut(s) 412, 1040
Hpy166II GTNNAC 4 cut(s) 188, 309, 524, 733
Hpy188I TCNGA 5 cut(s) 139, 513, 698, 858, 1107
Hpy188III TCNNGA 3 cut(s) 356, 556, 946
Hpy8I GTNNAC 4 cut(s) 188, 309, 524, 733
Hpy99I CGWCG 1 cut(s) 866
HpyAV CCTTC 4 cut(s) 92, 97, 271, 353
HpyCH4III ACNGT 5 cut(s) 398, 575, 973, 1078, 1120
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 8 cut(s) 408, 417, 443, 474, 596, 893, 912, 1130
HpyF10VI GCNNNNNNNGC 8 cut(s) 42, 414, 480, 620, 791, 867, 890, 893
HpyF3I CTNAG 6 cut(s) 91, 312, 330, 450, 855, 1021
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 7 cut(s) 133, 194, 389, 474, 785, 994, 1134
HspAI GCGC 1 cut(s) 383
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 6 cut(s) 132, 280, 352, 513, 724, 1035
LguI GCTCTTC 1 cut(s) 295
Lsp1109I GCAGC 5 cut(s) 15, 367, 632, 905, 991
LweI GCATC 6 cut(s) 426, 430, 573, 623, 905, 921
MaeI CTAG 4 cut(s) 267, 624, 755, 1083
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 3 cut(s) 199, 466, 1028
MalI GATC 6 cut(s) 134, 282, 354, 515, 726, 1037
MboI GATC 6 cut(s) 132, 280, 352, 513, 724, 1035
MboII GAAGA 6 cut(s) 107, 282, 385, 891, 979, 1088
MfeI CAATTG 2 cut(s) 591, 927
MflI RGATCY 3 cut(s) 280, 352, 513
MluCI AATT 7 cut(s) 158, 339, 389, 403, 591, 769, 927
MlyI GAGTC 1 cut(s) 943
MmeI TCCRAC 1 cut(s) 528
Mph1103I ATGCAT 1 cut(s) 914
MroXI GAANNNNTTC 1 cut(s) 650
MseI TTAA 3 cut(s) 342, 581, 602
MspCI CTTAAG 1 cut(s) 601
MspI CCGG 1 cut(s) 1008
MspR9I CCNGG 2 cut(s) 504, 1141
MunI CAATTG 2 cut(s) 591, 927
MvaI CCWGG 2 cut(s) 504, 1141
MvnI CGCG 1 cut(s) 438
MwoI GCNNNNNNNGC 8 cut(s) 42, 414, 480, 620, 791, 867, 890, 893
NdeII GATC 6 cut(s) 132, 280, 352, 513, 724, 1035
NheI GCTAGC 1 cut(s) 1082
NlaIII CATG 7 cut(s) 133, 194, 389, 474, 785, 994, 1134
NlaIV GGNNCC 1 cut(s) 713
NmuCI GTSAC 3 cut(s) 199, 466, 1028
NsbI TGCGCA 1 cut(s) 384
NsiI ATGCAT 1 cut(s) 914
NspI RCATGY 1 cut(s) 474
PciSI GCTCTTC 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 650
PfeI GAWTC 1 cut(s) 1136
Pfl23II CGTACG 1 cut(s) 220
PkrI GCNGC 6 cut(s) 30, 382, 622, 886, 895, 1006
PleI GAGTC 1 cut(s) 943
PpsI GAGTC 1 cut(s) 943
PpuMI RGGWCCY 1 cut(s) 712
Psp5II RGGWCCY 1 cut(s) 712
Psp6I CCWGG 2 cut(s) 502, 1139
PspFI CCCAGC 1 cut(s) 676
PspGI CCWGG 2 cut(s) 502, 1139
PspLI CGTACG 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 713
PspPI GGNCC 1 cut(s) 712
PspPPI RGGWCCY 1 cut(s) 712
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 3 cut(s) 280, 352, 513
RsaI GTAC 9 cut(s) 124, 154, 222, 628, 753, 825, 962, 980, 1117
RsaNI GTAC 9 cut(s) 123, 153, 221, 627, 752, 824, 961, 979, 1116
SalI GTCGAC 1 cut(s) 522
SapI GCTCTTC 1 cut(s) 295
SaqAI TTAA 3 cut(s) 342, 581, 602
SatI GCNGC 6 cut(s) 29, 381, 621, 885, 894, 1005
Sau3AI GATC 6 cut(s) 132, 280, 352, 513, 724, 1035
Sau96I GGNCC 1 cut(s) 712
ScaI AGTACT 2 cut(s) 628, 753
SchI GAGTC 1 cut(s) 943
ScrFI CCNGG 2 cut(s) 504, 1141
SfaNI GCATC 6 cut(s) 426, 430, 573, 623, 905, 921
SfcI CTRYAG 1 cut(s) 1077
SinI GGWCC 1 cut(s) 712
SmlI CTYRAG 1 cut(s) 601
SmoI CTYRAG 1 cut(s) 601
Sse9I AATT 7 cut(s) 158, 339, 389, 403, 591, 769, 927
SsiI CCGC 4 cut(s) 72, 436, 618, 885
SspMI CTAG 4 cut(s) 267, 624, 755, 1083
StyD4I CCNGG 2 cut(s) 502, 1139
TaaI ACNGT 5 cut(s) 398, 575, 973, 1078, 1120
TaiI ACGT 1 cut(s) 226
TaqI TCGA 2 cut(s) 523, 1038
TasI AATT 7 cut(s) 158, 339, 389, 403, 591, 769, 927
TatI WGTACW 5 cut(s) 626, 751, 960, 978, 1115
TauI GCSGC 1 cut(s) 887
TfiI GAWTC 1 cut(s) 1136
Tru1I TTAA 3 cut(s) 342, 581, 602
Tru9I TTAA 3 cut(s) 342, 581, 602
TscAI CASTG 3 cut(s) 316, 640, 1125
TseFI GTSAC 3 cut(s) 199, 466, 1028
TseI GCWGC 5 cut(s) 28, 380, 620, 893, 1004
Tsp45I GTSAC 3 cut(s) 199, 466, 1028
TspDTI ATGAA 8 cut(s) 17, 282, 402, 474, 600, 679, 770, 979
TspRI CASTG 3 cut(s) 316, 640, 1125
Vha464I CTTAAG 1 cut(s) 601
VpaK11BI GGWCC 1 cut(s) 712
XapI RAATTY 1 cut(s) 389
XceI RCATGY 1 cut(s) 474
XmiI GTMKAC 2 cut(s) 523, 732
XmnI GAANNNNTTC 1 cut(s) 650
XspI CTAG 4 cut(s) 267, 624, 755, 1083
ZrmI AGTACT 2 cut(s) 628, 753
Zsp2I ATGCAT 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.