AT5G25940

Early nodulin 93 ENOD93 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003255
Physical Location & Seq
Reverse (-)
9054122 .. 9055255
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G25940.1

Sequence Viewer

Length: 348 bp
ATGGAAAATCGGTCAGAAATGGGTAACCGGAGGCAGCAGAATCTCTTCGTCATAGCTTCTCCCGACGAGATTGCTAAGATCCATCGAGCCGAAACTTCCAAACAAGCCGGAGCTATTGCCGGAGCTAAGGCCGCCGCCGTTGCCGCCGTCGCCAGTGCGATTCCCACAGTAGCTGCCGTTCGTATGTTCCCGTGGGCTAAGGCAAACCTCAACTACACTGCTCAAGCACTCATTATTTCTTCAGCTTCTATCGCTGCGTTCTTCATAACCGCGGATAAAACGATTCTACAAGGCGCAAGAAGAAACACCGAGGCTCAGTTAAAGAAAGTTCAGCAAGACTCTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ENOD93

Protein Analysis

115

Amino Acids

12.27

Weight (kDa)

10.27

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENOD93 PF03386 26 - 103 1.7e-38 Early nodulin 93 ENOD93 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 272
AciI CCGC 5 cut(s) 132, 135, 144, 270, 272
AclWI GGATC 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 225
AluBI AGCT 5 cut(s) 56, 113, 125, 173, 245
AluI AGCT 5 cut(s) 56, 113, 125, 173, 245
AlwI GGATC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 173
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 3 cut(s) 34, 173, 254
Asp700I GAANNNNTTC 1 cut(s) 44
AspLEI GCGC 1 cut(s) 296
BbvI GCAGC 3 cut(s) 46, 160, 241
BccI CCATC 1 cut(s) 90
BceAI ACGGC 3 cut(s) 122, 131, 161
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BisI GCNGC 6 cut(s) 35, 132, 135, 144, 174, 255
BlsI GCNGC 6 cut(s) 36, 133, 136, 145, 175, 256
Bpu10I CCTNAGC 2 cut(s) 126, 198
BpuEI CTTGAG 1 cut(s) 207
BsaJI CCNNGG 3 cut(s) 191, 270, 309
BsaWI WCCGGW 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 153
BseDI CCNNGG 3 cut(s) 191, 270, 309
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 153
BseXI GCAGC 3 cut(s) 46, 160, 241
Bsh1236I CGCG 1 cut(s) 272
BshFI GGCC 1 cut(s) 131
BsiSI CCGG 3 cut(s) 28, 108, 120
BsnI GGCC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 78
BspACI CCGC 5 cut(s) 132, 135, 144, 270, 272
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 328
BspFNI CGCG 1 cut(s) 272
BspPI GGATC 1 cut(s) 73
BsrI ACTGG 1 cut(s) 153
BssECI CCNNGG 3 cut(s) 191, 270, 309
BssMI GATC 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 50
BstDEI CTNAG 4 cut(s) 75, 126, 198, 315
BstDSI CCRYGG 2 cut(s) 191, 270
BstEII GGTNACC 1 cut(s) 23
BstFNI CGCG 1 cut(s) 272
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 1 cut(s) 81
BstMBI GATC 1 cut(s) 78
BstMWI GCNNNNNNNGC 5 cut(s) 131, 140, 143, 149, 251
BstPI GGTNACC 1 cut(s) 23
BstUI CGCG 1 cut(s) 272
BstV1I GCAGC 3 cut(s) 46, 160, 241
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BsuRI GGCC 1 cut(s) 131
BtgI CCRYGG 2 cut(s) 191, 270
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 2 cut(s) 160, 216
CaiI CAGNNNCTG 1 cut(s) 173
CfoI GCGC 1 cut(s) 296
Cfr42I CCGCGG 1 cut(s) 273
DdeI CTNAG 4 cut(s) 75, 126, 198, 315
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 225
Eco91I GGTNACC 1 cut(s) 23
EcoO65I GGTNACC 1 cut(s) 23
FaiI YATR 3 cut(s) 53, 185, 266
Fnu4HI GCNGC 6 cut(s) 35, 132, 135, 144, 174, 255
Fsp4HI GCNGC 6 cut(s) 35, 132, 135, 144, 174, 255
GlaI GCGC 1 cut(s) 295
GluI GCNGC 6 cut(s) 35, 132, 135, 144, 174, 255
HaeIII GGCC 1 cut(s) 131
HapII CCGG 3 cut(s) 28, 108, 120
HhaI GCGC 1 cut(s) 296
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HinfI GANTC 4 cut(s) 40, 160, 283, 338
HpaII CCGG 3 cut(s) 28, 108, 120
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 62
Hpy99I CGWCG 2 cut(s) 68, 152
HpyCH4III ACNGT 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 5 cut(s) 131, 140, 143, 149, 251
HpyF3I CTNAG 4 cut(s) 75, 126, 198, 315
HspAI GCGC 1 cut(s) 294
KspI CCGCGG 1 cut(s) 273
Kzo9I GATC 1 cut(s) 78
LmnI GCTCC 2 cut(s) 110, 122
LpnPI CCDG 4 cut(s) 41, 121, 133, 166
Lsp1109I GCAGC 3 cut(s) 46, 160, 241
MaeIII GTNAC 1 cut(s) 23
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 4 cut(s) 37, 231, 253, 312
MflI RGATCY 1 cut(s) 78
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 3 cut(s) 24, 218, 304
MroXI GAANNNNTTC 1 cut(s) 44
MseI TTAA 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 3 cut(s) 28, 108, 120
MvnI CGCG 1 cut(s) 272
MwoI GCNNNNNNNGC 5 cut(s) 131, 140, 143, 149, 251
NdeII GATC 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 44
PfeI GAWTC 3 cut(s) 40, 160, 283
PkrI GCNGC 6 cut(s) 36, 133, 136, 145, 175, 256
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
PspEI GGTNACC 1 cut(s) 23
PsrI GAACNNNNNNTAC 2 cut(s) 162, 194
PstNI CAGNNNCTG 1 cut(s) 173
PsuI RGATCY 1 cut(s) 78
SacII CCGCGG 1 cut(s) 273
SaqAI TTAA 1 cut(s) 320
SatI GCNGC 6 cut(s) 35, 132, 135, 144, 174, 255
Sau3AI GATC 1 cut(s) 78
SchI GAGTC 1 cut(s) 332
SetI ASST 6 cut(s) 58, 115, 127, 175, 210, 247
Sfr303I CCGCGG 1 cut(s) 273
SgrBI CCGCGG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
SsiI CCGC 5 cut(s) 132, 135, 144, 270, 272
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 85
TauI GCSGC 3 cut(s) 134, 137, 146
TfiI GAWTC 3 cut(s) 40, 160, 283
Tru1I TTAA 1 cut(s) 320
Tru9I TTAA 1 cut(s) 320
TscAI CASTG 2 cut(s) 160, 223
TseI GCWGC 3 cut(s) 34, 173, 254
TspDTI ATGAA 1 cut(s) 253
TspRI CASTG 2 cut(s) 160, 223
XmnI GAANNNNTTC 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.