Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017785.1

Orthogroup ID

OG0003255

Physical Location & Seq

Genomic Coordinates Forward (+)

16232 .. 17510

Gene Structure 1279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017785.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgggaattccatcggaaatgagggacatgtgggtgaacaaccgtcgaaacgctctgctgattccttcgccatacgaagatgagattcaacacaaggccttaagggccaaaacttgcacccaagagggcgctcgtcagggattcaaggcagcttgcatttggggtgctgtcagcgctgtgcccacattggctgctgttcgtacgattccttgggcaaaggctaacctcaattatactgctcaagcactgatgatatctgctgcatcaattgctgcttacttcatcaccgctgataaaactatcctggagtgtgctagaaaaaatgcgcagttgcaacaagccttgagccgccagcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ENOD93

Protein Analysis

119

Amino Acids

13.12

Weight (kDa)

9.6

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25940
fragaria_vesca	FvH4_1g03760 FvH4_2g35210
malus_domestica	MD02G1036100.v1.1 MD02G1036200.v1.1 MD08G1110000.v1.1 MD15G1176300.v1.1 MD15G1176400.v1.1
prunus_persica	Prupe.1G444300_v2.0.a1 Prupe.7G239200_v2.0.a1
pyrus_communis	pycom02g02970 pycom02g02980 pycom08g09170
rosa_chinensis	RchiOBHm_Chr2g0089171 RchiOBHm_Chr6g0306721
rosa_laevigata	RLG00000010770 RLG00000016000
rosa_multiflora	Rmu_co8442367.1_g000001 Rmu_sc0008909.1_g000003 Rmu_sc0009729.1_g000002 Rmu_sc0017785.1_g000006 Rmu_sc0017786.1_g000006
rosa_roxburghii	Rroxscaffold_2G00152190 Rroxscaffold_7G00161510
rosa_rugosa	Rorug01G0487900 Rorug06G0351700 Rorug06G0351800
rosa_samantha	Rh2AG043700 Rh2BG042400 Rh2CG043700 Rh2DG042600 Rh6AG464300 Rh6BG436700 Rh6CG478400 Rh6DG465200
rosa_wichuraiana	Rw2G003390 Rw6G040450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	327
AciI	CCGC	2 cut(s)	288, 349
AcsI	RAATTY	1 cut(s)	6
AfaI	GTAC	1 cut(s)	202
AfeI	AGCGCT	1 cut(s)	175
AflII	CTTAAG	1 cut(s)	100
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	2 cut(s)	89, 145
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
Aor51HI	AGCGCT	1 cut(s)	175
AoxI	GGCC	2 cut(s)	96, 105
ApeKI	GCWGC	4 cut(s)	149, 191, 260, 272
ApoI	RAATTY	1 cut(s)	6
AspLEI	GCGC	3 cut(s)	131, 176, 328
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	46, 277
BaeGI	GKGCMC	1 cut(s)	183
BbvI	GCAGC	4 cut(s)	161, 178, 247, 259
BccI	CCATC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	305
BfaI	CTAG	1 cut(s)	315
BfoI	RGCGCY	2 cut(s)	132, 177
BfrI	CTTAAG	1 cut(s)	100
BglI	GCCNNNNNGGC	1 cut(s)	104
BisI	GCNGC	5 cut(s)	150, 192, 261, 273, 349
BlsI	GCNGC	5 cut(s)	151, 193, 262, 274, 350
Bme1390I	CCNGG	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	209
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	4 cut(s)	161, 178, 247, 259
BshFI	GGCC	2 cut(s)	98, 107
BsiWI	CGTACG	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	98, 107
Bsp1286I	GDGCHC	1 cut(s)	183
BspACI	CCGC	2 cut(s)	288, 349
BspANI	GGCC	2 cut(s)	98, 107
BspTI	CTTAAG	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	44
BstAFI	CTTAAG	1 cut(s)	100
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	154, 353
BstH2I	RGCGCY	2 cut(s)	132, 177
BstHHI	GCGC	3 cut(s)	131, 176, 328
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 173, 269
BstNI	CCWGG	1 cut(s)	305
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	303
BstSLI	GKGCMC	1 cut(s)	183
BstV1I	GCAGC	4 cut(s)	161, 178, 247, 259
BsuRI	GGCC	2 cut(s)	98, 107
BtsIMutI	CAGTG	1 cut(s)	245
Cac8I	GCNNGC	2 cut(s)	154, 353
CfoI	GCGC	3 cut(s)	131, 176, 328
Cfr13I	GGNCC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	7 cut(s)	98, 107, 152, 191, 221, 341, 348
CviKI_1	RGCY	7 cut(s)	98, 107, 152, 191, 221, 341, 348
CviQI	GTAC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	209
Eco147I	AGGCCT	1 cut(s)	98
Eco32I	GATATC	1 cut(s)	255
Eco47III	AGCGCT	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	303
EcoRV	GATATC	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	1 cut(s)	31
FaiI	YATR	3 cut(s)	29, 73, 234
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	1 cut(s)	27
Fnu4HI	GCNGC	5 cut(s)	150, 192, 261, 273, 349
Fsp4HI	GCNGC	5 cut(s)	150, 192, 261, 273, 349
FspBI	CTAG	1 cut(s)	315
FspI	TGCGCA	1 cut(s)	327
GlaI	GCGC	3 cut(s)	130, 175, 327
GluI	GCNGC	5 cut(s)	150, 192, 261, 273, 349
GsuI	CTGGAG	1 cut(s)	326
HaeII	RGCGCY	2 cut(s)	132, 177
HaeIII	GGCC	2 cut(s)	98, 107
HhaI	GCGC	3 cut(s)	131, 176, 328
Hin1II	CATG	1 cut(s)	31
Hin6I	GCGC	3 cut(s)	129, 174, 326
HinP1I	GCGC	3 cut(s)	129, 174, 326
HinfI	GANTC	4 cut(s)	61, 85, 141, 205
HphI	GGTGA	2 cut(s)	46, 277
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	16
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4V	TGCA	4 cut(s)	117, 156, 263, 334
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 173, 269
Hsp92II	CATG	1 cut(s)	31
HspAI	GCGC	3 cut(s)	129, 174, 326
LpnPI	CCDG	3 cut(s)	122, 290, 317
Lsp1109I	GCAGC	4 cut(s)	161, 178, 247, 259
LweI	GCATC	1 cut(s)	272
MaeI	CTAG	1 cut(s)	315
MboII	GAAGA	1 cut(s)	89
MfeI	CAATTG	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	3 cut(s)	6, 229, 267
MnlI	CCTC	3 cut(s)	15, 118, 236
MseI	TTAA	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	290
MspCI	CTTAAG	1 cut(s)	100
MspR9I	CCNGG	1 cut(s)	305
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	3 cut(s)	104, 173, 269
NlaIII	CATG	1 cut(s)	31
NsbI	TGCGCA	1 cut(s)	327
NspI	RCATGY	1 cut(s)	31
PceI	AGGCCT	1 cut(s)	98
PciI	ACATGT	1 cut(s)	27
PfeI	GAWTC	4 cut(s)	61, 85, 141, 205
Pfl23II	CGTACG	1 cut(s)	200
PfoI	TCCNGGA	1 cut(s)	303
PkrI	GCNGC	5 cut(s)	151, 193, 262, 274, 350
PscI	ACATGT	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspLI	CGTACG	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	105
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	5 cut(s)	150, 192, 261, 273, 349
Sau96I	GGNCC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	2 cut(s)	154, 228
SfaNI	GCATC	1 cut(s)	272
SfiI	GGCCNNNNNGGCC	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	3 cut(s)	100, 240, 343
SmoI	CTYRAG	3 cut(s)	100, 240, 343
Sse9I	AATT	3 cut(s)	6, 229, 267
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	2 cut(s)	288, 349
SspMI	CTAG	1 cut(s)	315
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	44
TaqI	TCGA	1 cut(s)	46
TasI	AATT	3 cut(s)	6, 229, 267
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	4 cut(s)	61, 85, 141, 205
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	1 cut(s)	252
TseI	GCWGC	4 cut(s)	149, 191, 260, 272
TspDTI	ATGAA	1 cut(s)	271
TspRI	CASTG	1 cut(s)	252
Vha464I	CTTAAG	1 cut(s)	100
XapI	RAATTY	1 cut(s)	6
XceI	RCATGY	1 cut(s)	31
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.