Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8442367.1

Orthogroup ID

OG0003255

Physical Location & Seq

Genomic Coordinates Forward (+)

513 .. 1585

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8442367.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atggcaaagaatgtggctcagtctcccatggagaaacgcagcctgacgtcatttgaccagcagttggctaagcgctgttctcatgagggtgtaaaagctggagctaaggcagctgttgttgctagcattgccactgcaattccaacttttgctagtgtgaggatgctgccatgggcaaaagccaatctgaatcccactgctcaggctctcataatttccacagcggctggaatggcatatttcatagtggctgacaagaccattttggcaaccgcaaggaagaactcattccaccaaggatctaactatgaagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ENOD93

Protein Analysis

105

Amino Acids

11.12

Weight (kDa)

10.01

Isoelectric Point (pI)

31.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25940
fragaria_vesca	FvH4_1g03760 FvH4_2g35210
malus_domestica	MD02G1036100.v1.1 MD02G1036200.v1.1 MD08G1110000.v1.1 MD15G1176300.v1.1 MD15G1176400.v1.1
prunus_persica	Prupe.1G444300_v2.0.a1 Prupe.7G239200_v2.0.a1
pyrus_communis	pycom02g02970 pycom02g02980 pycom08g09170
rosa_chinensis	RchiOBHm_Chr2g0089171 RchiOBHm_Chr6g0306721
rosa_laevigata	RLG00000010770 RLG00000016000
rosa_multiflora	Rmu_co8442367.1_g000001 Rmu_sc0008909.1_g000003 Rmu_sc0009729.1_g000002 Rmu_sc0017785.1_g000006 Rmu_sc0017786.1_g000006
rosa_roxburghii	Rroxscaffold_2G00152190 Rroxscaffold_7G00161510
rosa_rugosa	Rorug01G0487900 Rorug06G0351700 Rorug06G0351800
rosa_samantha	Rh2AG043700 Rh2BG042400 Rh2CG043700 Rh2DG042600 Rh6AG464300 Rh6BG436700 Rh6CG478400 Rh6DG465200
rosa_wichuraiana	Rw2G003390 Rw6G040450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	50
AccB7I	CCANNNNNTGG	1 cut(s)	64
AciI	CCGC	2 cut(s)	224, 273
AclWI	GGATC	1 cut(s)	307
AcyI	GRCGYC	1 cut(s)	47
AfeI	AGCGCT	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	64
AluBI	AGCT	3 cut(s)	98, 104, 113
AluI	AGCT	3 cut(s)	98, 104, 113
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	307
AlwNI	CAGNNNCTG	1 cut(s)	227
Aor51HI	AGCGCT	1 cut(s)	74
ApeKI	GCWGC	3 cut(s)	39, 110, 166
Asp700I	GAANNNNTTC	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	75
AsuNHI	GCTAGC	1 cut(s)	122
BbvI	GCAGC	3 cut(s)	51, 122, 153
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	2 cut(s)	123, 153
BfoI	RGCGCY	1 cut(s)	76
BisI	GCNGC	4 cut(s)	40, 111, 167, 225
BlpI	GCTNAGC	1 cut(s)	69
BlsI	GCNGC	4 cut(s)	41, 112, 168, 226
BmsI	GCATC	1 cut(s)	153
BmtI	GCTAGC	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	120
Bpu10I	CCTNAGC	2 cut(s)	105, 201
Bpu1102I	GCTNAGC	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	27, 170, 295
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	126
BseDI	CCNNGG	3 cut(s)	27, 170, 295
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	2 cut(s)	32, 215
BseXI	GCAGC	3 cut(s)	51, 122, 153
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	299
Bsp1720I	GCTNAGC	1 cut(s)	69
Bsp19I	CCATGG	2 cut(s)	27, 170
BspACI	CCGC	2 cut(s)	224, 273
BspCNI	CTCAG	2 cut(s)	31, 214
BspHI	TCATGA	1 cut(s)	82
BspOI	GCTAGC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	126
BssECI	CCNNGG	3 cut(s)	27, 170, 295
BssMI	GATC	1 cut(s)	299
BssNI	GRCGYC	1 cut(s)	47
BssT1I	CCWWGG	3 cut(s)	27, 170, 295
BstACI	GRCGYC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	4 cut(s)	18, 69, 105, 201
BstDSI	CCRYGG	2 cut(s)	27, 170
BstF5I	GGATG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	1 cut(s)	302
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	299
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 119, 128, 233
BstV1I	GCAGC	3 cut(s)	51, 122, 153
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
BtgI	CCRYGG	2 cut(s)	27, 170
BtsCI	GGATG	1 cut(s)	168
BtsI	GCAGTG	2 cut(s)	132, 195
BtsIMutI	CAGTG	2 cut(s)	132, 195
Cac8I	GCNNGC	1 cut(s)	124
CaiI	CAGNNNCTG	1 cut(s)	227
CciI	TCATGA	1 cut(s)	82
CfoI	GCGC	1 cut(s)	75
CspCI	CAANNNNNGTGG	1 cut(s)	29
CviAII	CATG	3 cut(s)	28, 83, 171
DdeI	CTNAG	4 cut(s)	18, 69, 105, 201
DpnI	GATC	1 cut(s)	301
DpnII	GATC	1 cut(s)	299
Eco130I	CCWWGG	3 cut(s)	27, 170, 295
Eco47III	AGCGCT	1 cut(s)	74
EcoT14I	CCWWGG	3 cut(s)	27, 170, 295
ErhI	CCWWGG	3 cut(s)	27, 170, 295
FaeI	CATG	3 cut(s)	31, 86, 174
FaiI	YATR	8 cut(s)	29, 84, 172, 212, 238, 245, 309, 316
FatI	CATG	3 cut(s)	27, 82, 170
Fnu4HI	GCNGC	4 cut(s)	40, 111, 167, 225
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	4 cut(s)	40, 111, 167, 225
FspBI	CTAG	2 cut(s)	123, 153
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	4 cut(s)	40, 111, 167, 225
GsuI	CTGGAG	1 cut(s)	120
HaeII	RGCGCY	1 cut(s)	76
HhaI	GCGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	3 cut(s)	31, 86, 174
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HinfI	GANTC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	1 cut(s)	83
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 119, 128, 233
HpyF3I	CTNAG	4 cut(s)	18, 69, 105, 201
HpySE526I	ACGT	1 cut(s)	47
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	3 cut(s)	31, 86, 174
HspAI	GCGC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	299
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	5 cut(s)	56, 71, 84, 188, 213
Lsp1109I	GCAGC	3 cut(s)	51, 122, 153
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	2 cut(s)	123, 153
MaeII	ACGT	1 cut(s)	47
MalI	GATC	1 cut(s)	301
MboI	GATC	1 cut(s)	299
MboII	GAAGA	1 cut(s)	292
MflI	RGATCY	1 cut(s)	299
MluCI	AATT	2 cut(s)	138, 213
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	2 cut(s)	79, 153
MroXI	GAANNNNTTC	1 cut(s)	287
MslI	CAYNNNNRTG	1 cut(s)	87
MspA1I	CMGCKG	2 cut(s)	113, 224
MwoI	GCNNNNNNNGC	4 cut(s)	110, 119, 128, 233
NcoI	CCATGG	2 cut(s)	27, 170
NdeII	GATC	1 cut(s)	299
NheI	GCTAGC	1 cut(s)	122
NlaIII	CATG	3 cut(s)	31, 86, 174
PagI	TCATGA	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	190
PflMI	CCANNNNNTGG	1 cut(s)	64
PkrI	GCNGC	4 cut(s)	41, 112, 168, 226
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	113
RseI	CAYNNNNRTG	1 cut(s)	87
SatI	GCNGC	4 cut(s)	40, 111, 167, 225
Sau3AI	GATC	1 cut(s)	299
SetI	ASST	4 cut(s)	50, 100, 106, 115
SfaNI	GCATC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	2 cut(s)	138, 213
SsiI	CCGC	2 cut(s)	224, 273
SspMI	CTAG	2 cut(s)	123, 153
StyI	CCWWGG	3 cut(s)	27, 170, 295
TaiI	ACGT	1 cut(s)	50
TasI	AATT	2 cut(s)	138, 213
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	190
TscAI	CASTG	2 cut(s)	139, 202
TseI	GCWGC	3 cut(s)	39, 110, 166
TspDTI	ATGAA	1 cut(s)	232
TspRI	CASTG	2 cut(s)	139, 202
Van91I	CCANNNNNTGG	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	287
XspI	CTAG	2 cut(s)	123, 153
ZraI	GACGTC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.