Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003255

Physical Location & Seq

Genomic Coordinates Forward (+)

50081848 .. 50083262

Gene Structure 1415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0351800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGCGCAGTCTTCCAAATTGGTGGAAGAGATGGTGGCACAATTCCTGTCGAGATTACCATCTAAAGCTTTGATGCGATTCAAATGCATTTGTAAGTCGTGGTACAATCTTATAAATAGTCCAAGTTTCGTGGCCCAGAATCTTTTTAATTCCATGAACAACAAATTCACCTCTTCCACTTGCATCATTGCCAAGCATACTGTTCTTAAGGATAGTAGCATTACAGATAGAAATGAAATTTCTGATATCCTTCAGTATGGAAACAATGATAAGAAGCAAATTTTGCTTTCATCACTTACTCTTTGCGACAATCTTGATGGTGATGACCAAGAGCTTTATTGTATTATTGAGGACGACCTTATTATTCCTTTTCCTCTAGGTAGAAGTTCCTTTAATTTATATATTGTAGGTCATTGTGATGGGATTATTTGTCTTACTTCATTTCTTTGCGATGATGATGGGGATATTGCTTTATGCAACCCTTCAATCAAGGAATTCAATCATCTTCCAAAATCCGGTATTCATCTCCCCCCCAAAAATGAAGATGATTATTTAAATGAATATAACGTAGGATTTGGCTATGATTCCAAAGCAAAGGTTTACAAGGTTGTTAAAATTGTCGATTTTTCTTCGTCACATCCTCCAAGAGTAGAGGTGTACACCTTAGGTGCAGATTGTTGGAGAGAGATCAAGGCATTTGTACTGGGAACTATCTCCGGCCAACGATCTTTACAGATGTACTTTAAGGGAATTTATTATTGGAGTGGGTTTAGTTATATTACGAGAGAGCTACAGTACGTCTTCTTTGCATTCGACATGAGTGATGAGCTATTTTATTTGATATATCCGCCGGAGGATGCATTTGGAATTTACATGAATCTTGCTGTGTGGAAAGAATCCCTTCTTCTTGTCACCCATAAAGAAGAAGCTCCTAAATGTTTCGATTTATGGCTAAATGAAGACTCTGATTTTTTGAAAGGATCATGGACAAAATACTTCACTATCAAACCTATAGAAGTTGAAATTCCGTTAGTATTTTGGAAGAGTAACGAAATTCTTATGGTGAATGTTGATCGACGTATAGTTTCCTATAACCTTGATACCCAAACGCTCAAGTGTCTGCCGATTCATGGAGCGGAAGATCCTTTATGTATTTGTGCTATTAATTATGTAAATAGCATTATTTCAGTAAAGAGAAACAATAAACTCAAGTGCGTTGAAACTTATATGTGGCAAAATAATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ENOD93

Protein Analysis

415

Amino Acids

47.77

Weight (kDa)

5.22

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	5 - 43	3.2e-06	F-box domain
FBA_1	PF07734	130 - 379	8.8e-22	F-box associated beta propeller domain
FBA_3	PF08268	133 - 382	1.8e-18	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25940
fragaria_vesca	FvH4_1g03760 FvH4_2g35210
malus_domestica	MD02G1036100.v1.1 MD02G1036200.v1.1 MD08G1110000.v1.1 MD15G1176300.v1.1 MD15G1176400.v1.1
prunus_persica	Prupe.1G444300_v2.0.a1 Prupe.7G239200_v2.0.a1
pyrus_communis	pycom02g02970 pycom02g02980 pycom08g09170
rosa_chinensis	RchiOBHm_Chr2g0089171 RchiOBHm_Chr6g0306721
rosa_laevigata	RLG00000010770 RLG00000016000
rosa_multiflora	Rmu_co8442367.1_g000001 Rmu_sc0008909.1_g000003 Rmu_sc0009729.1_g000002 Rmu_sc0017785.1_g000006 Rmu_sc0017786.1_g000006
rosa_roxburghii	Rroxscaffold_2G00152190 Rroxscaffold_7G00161510
rosa_rugosa	Rorug01G0487900 Rorug06G0351700 Rorug06G0351800
rosa_samantha	Rh2AG043700 Rh2BG042400 Rh2CG043700 Rh2DG042600 Rh6AG464300 Rh6BG436700 Rh6CG478400 Rh6DG465200
rosa_wichuraiana	Rw2G003390 Rw6G040450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	113
AccBSI	CCGCTC	1 cut(s)	1136
AciI	CCGC	2 cut(s)	848, 1136
AclWI	GGATC	2 cut(s)	988, 1136
AcoI	YGGCCR	1 cut(s)	718
AcsI	RAATTY	8 cut(s)	164, 237, 279, 494, 750, 867, 1023, 1053
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	5 cut(s)	104, 659, 702, 740, 797
AfiI	CCNNNNNNNGG	2 cut(s)	515, 1130
AflII	CTTAAG	1 cut(s)	206
AgsI	TTSAA	6 cut(s)	82, 486, 499, 976, 1022, 1220
AjuI	GAANNNNNNNTTGG	2 cut(s)	742, 774
AluBI	AGCT	5 cut(s)	68, 334, 790, 829, 929
AluI	AGCT	5 cut(s)	68, 334, 790, 829, 929
AlwI	GGATC	2 cut(s)	988, 1136
AoxI	GGCC	2 cut(s)	132, 718
ApoI	RAATTY	8 cut(s)	164, 237, 279, 494, 750, 867, 1023, 1053
AseI	ATTAAT	1 cut(s)	1164
Asp700I	GAANNNNTTC	1 cut(s)	900
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	4 cut(s)	160, 332, 904, 1075
AxyI	CCTNAGG	1 cut(s)	664
BbsI	GAAGAC	3 cut(s)	3, 793, 966
BccI	CCATC	5 cut(s)	25, 67, 311, 413, 452
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	2 cut(s)	791, 1011
BfrI	CTTAAG	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	133
BmrI	ACTGGG	1 cut(s)	713
BmsI	GCATC	3 cut(s)	63, 192, 847
BmuI	ACTGGG	1 cut(s)	713
BpiI	GAAGAC	3 cut(s)	3, 793, 966
BpuEI	CTTGAG	2 cut(s)	1097, 1193
BsaBI	GATNNNNATC	1 cut(s)	58
BsaWI	WCCGGW	1 cut(s)	515
Bsc4I	CCNNNNNNNGG	2 cut(s)	515, 1130
Bse1I	ACTGG	1 cut(s)	708
Bse21I	CCTNAGG	1 cut(s)	664
Bse3DI	GCAATG	1 cut(s)	186
Bse8I	GATNNNNATC	1 cut(s)	58
BseGI	GGATG	2 cut(s)	637, 862
BseJI	GATNNNNATC	1 cut(s)	58
BseLI	CCNNNNNNNGG	2 cut(s)	515, 1130
BseMI	GCAATG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	708
BsgI	GTGCAG	1 cut(s)	690
BshFI	GGCC	2 cut(s)	134, 720
BsiSI	CCGG	3 cut(s)	516, 717, 851
BslI	CCNNNNNNNGG	2 cut(s)	515, 1130
BsmI	GAATGC	1 cut(s)	809
BsnI	GGCC	2 cut(s)	134, 720
Bsp1407I	TGTACA	1 cut(s)	657
Bsp143I	GATC	5 cut(s)	687, 725, 980, 1072, 1141
BspACI	CCGC	2 cut(s)	848, 1136
BspANI	GGCC	2 cut(s)	134, 720
BspPI	GGATC	2 cut(s)	988, 1136
BspTI	CTTAAG	1 cut(s)	206
BsrBI	CCGCTC	1 cut(s)	1136
BsrDI	GCAATG	1 cut(s)	186
BsrGI	TGTACA	1 cut(s)	657
BsrI	ACTGG	1 cut(s)	708
BssMI	GATC	5 cut(s)	687, 725, 980, 1072, 1141
Bst4CI	ACNGT	2 cut(s)	202, 795
Bst6I	CTCTTC	3 cut(s)	21, 178, 1037
BstAFI	CTTAAG	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	283
BstAUI	TGTACA	1 cut(s)	657
BstDEI	CTNAG	1 cut(s)	664
BstF5I	GGATG	2 cut(s)	637, 862
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	5 cut(s)	690, 728, 983, 1075, 1144
BstMBI	GATC	5 cut(s)	687, 725, 980, 1072, 1141
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstSFI	CTRYAG	2 cut(s)	791, 1011
BstV2I	GAAGAC	3 cut(s)	3, 793, 966
BstX2I	RGATCY	1 cut(s)	1141
BstXI	CCANNNNNNTGG	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	1141
Bsu36I	CCTNAGG	1 cut(s)	664
BsuRI	GGCC	2 cut(s)	134, 720
BtgZI	GCGATG	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	637, 862
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	133
Csp6I	GTAC	5 cut(s)	103, 658, 701, 739, 796
CspCI	CAANNNNNGTGG	2 cut(s)	111, 146
CviAII	CATG	5 cut(s)	154, 817, 874, 984, 1130
CviJI	RGCY	9 cut(s)	68, 134, 334, 579, 720, 790, 829, 929, 952
CviKI_1	RGCY	9 cut(s)	68, 134, 334, 579, 720, 790, 829, 929, 952
CviQI	GTAC	5 cut(s)	103, 658, 701, 739, 796
DdeI	CTNAG	1 cut(s)	664
DpnI	GATC	5 cut(s)	689, 727, 982, 1074, 1143
DpnII	GATC	5 cut(s)	687, 725, 980, 1072, 1141
DraI	TTTAAA	1 cut(s)	555
EaeI	YGGCCR	1 cut(s)	718
Eam1104I	CTCTTC	3 cut(s)	21, 178, 1037
EarI	CTCTTC	3 cut(s)	21, 178, 1037
EciI	GGCGGA	1 cut(s)	837
Eco32I	GATATC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	236
Eco81I	CCTNAGG	1 cut(s)	664
EcoRI	GAATTC	1 cut(s)	494
EcoRV	GATATC	1 cut(s)	247
EcoT22I	ATGCAT	2 cut(s)	89, 862
FaeI	CATG	5 cut(s)	157, 820, 877, 987, 1133
FalI	AAGNNNNNCTT	2 cut(s)	885, 917
FatI	CATG	5 cut(s)	153, 816, 873, 983, 1129
FokI	GGATG	2 cut(s)	624, 869
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	134, 720
HapII	CCGG	3 cut(s)	516, 717, 851
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	5 cut(s)	157, 820, 877, 987, 1133
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	7 cut(s)	78, 139, 584, 877, 896, 962, 1126
HpaII	CCGG	3 cut(s)	516, 717, 851
HphI	GGTGA	4 cut(s)	160, 332, 904, 1075
Hpy166II	GTNNAC	3 cut(s)	601, 658, 660
Hpy188I	TCNGA	2 cut(s)	244, 967
Hpy188III	TCNNGA	2 cut(s)	51, 314
Hpy8I	GTNNAC	3 cut(s)	601, 658, 660
Hpy99I	CGWCG	1 cut(s)	1080
HpyAV	CCTTC	3 cut(s)	260, 492, 911
HpyCH4III	ACNGT	2 cut(s)	202, 795
HpyCH4IV	ACGT	3 cut(s)	567, 798, 1078
HpyCH4V	TGCA	6 cut(s)	87, 183, 477, 671, 809, 860
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpyF3I	CTNAG	1 cut(s)	664
HpySE526I	ACGT	3 cut(s)	567, 798, 1078
Hsp92II	CATG	5 cut(s)	157, 820, 877, 987, 1133
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	5 cut(s)	687, 725, 980, 1072, 1141
LmnI	GCTCC	2 cut(s)	934, 1133
LpnPI	CCDG	6 cut(s)	59, 149, 529, 689, 730, 864
LweI	GCATC	3 cut(s)	63, 192, 847
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	3 cut(s)	567, 798, 1078
MaeIII	GTNAC	3 cut(s)	633, 910, 1046
MalI	GATC	5 cut(s)	689, 727, 982, 1074, 1143
MbiI	CCGCTC	1 cut(s)	1136
MboI	GATC	5 cut(s)	687, 725, 980, 1072, 1141
MflI	RGATCY	1 cut(s)	1141
MlyI	GAGTC	1 cut(s)	956
MmeI	TCCRAC	1 cut(s)	659
MnlI	CCTC	6 cut(s)	181, 343, 384, 646, 651, 847
Mph1103I	ATGCAT	2 cut(s)	89, 862
MroXI	GAANNNNTTC	1 cut(s)	900
MseI	TTAA	8 cut(s)	147, 207, 393, 554, 612, 744, 1164, 1246
MslI	CAYNNNNRTG	1 cut(s)	417
MspCI	CTTAAG	1 cut(s)	206
MspI	CCGG	3 cut(s)	516, 717, 851
Mva1269I	GAATGC	1 cut(s)	809
MwoI	GCNNNNNNNGC	1 cut(s)	283
NdeII	GATC	5 cut(s)	687, 725, 980, 1072, 1141
NlaIII	CATG	5 cut(s)	157, 820, 877, 987, 1133
NmuCI	GTSAC	2 cut(s)	633, 910
NsiI	ATGCAT	2 cut(s)	89, 862
PctI	GAATGC	1 cut(s)	809
PdmI	GAANNNNTTC	1 cut(s)	900
PfeI	GAWTC	6 cut(s)	78, 139, 584, 877, 896, 1126
PleI	GAGTC	1 cut(s)	956
PpsI	GAGTC	1 cut(s)	956
PshBI	ATTAAT	1 cut(s)	1164
PsiI	TTATAA	1 cut(s)	113
PspPI	GGNCC	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	1141
RsaI	GTAC	5 cut(s)	104, 659, 702, 740, 797
RsaNI	GTAC	5 cut(s)	103, 658, 701, 739, 796
RseI	CAYNNNNRTG	1 cut(s)	417
SaqAI	TTAA	8 cut(s)	147, 207, 393, 554, 612, 744, 1164, 1246
Sau3AI	GATC	5 cut(s)	687, 725, 980, 1072, 1141
Sau96I	GGNCC	1 cut(s)	133
SchI	GAGTC	1 cut(s)	956
SfaNI	GCATC	3 cut(s)	63, 192, 847
SfcI	CTRYAG	2 cut(s)	791, 1011
SmiI	ATTTAAAT	1 cut(s)	555
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	3 cut(s)	206, 1112, 1208
SmoI	CTYRAG	3 cut(s)	206, 1112, 1208
SsiI	CCGC	2 cut(s)	848, 1136
SspMI	CTAG	1 cut(s)	377
SwaI	ATTTAAAT	1 cut(s)	555
TaaI	ACNGT	2 cut(s)	202, 795
TaiI	ACGT	3 cut(s)	570, 801, 1081
TaqI	TCGA	5 cut(s)	50, 621, 813, 942, 1075
TatI	WGTACW	3 cut(s)	657, 700, 738
TfiI	GAWTC	6 cut(s)	78, 139, 584, 877, 896, 1126
Tru1I	TTAA	8 cut(s)	147, 207, 393, 554, 612, 744, 1164, 1246
Tru9I	TTAA	8 cut(s)	147, 207, 393, 554, 612, 744, 1164, 1246
TseFI	GTSAC	2 cut(s)	633, 910
Tsp45I	GTSAC	2 cut(s)	633, 910
TspGWI	ACGGA	1 cut(s)	1017
Vha464I	CTTAAG	1 cut(s)	206
VspI	ATTAAT	1 cut(s)	1164
XapI	RAATTY	8 cut(s)	164, 237, 279, 494, 750, 867, 1023, 1053
XmnI	GAANNNNTTC	1 cut(s)	900
XspI	CTAG	1 cut(s)	377
Zsp2I	ATGCAT	2 cut(s)	89, 862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.