Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001834

Physical Location & Seq

Genomic Coordinates Forward (+)

9667311 .. 9667886

Gene Structure 576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAGGCGTCGTTCATTAGATCGCTACCGTCTGCCGGAAACTTCGCCAACCTATTGCCGACCGGGACCGCCCTCATATTCGAAACCCTACTACCGTCTTTCTCCAATGGCGGCGAGTGCAACAACAAACCCGTCAATAAACTCCTCACCATTACTCTCATCTCCTTTTGCGCCGCGGCTTGCTTCTTCTCCTCCTTCACCGACTCATATGTAGGCCAAGATGGCCGCATTTACTACGGAATTGCCACCTCTAACGGTCTCCACATCCTCAACGACTATCCAGACGAAGGTTATGATCCAGAGTCCGGCTTAACGGCTGATAAGAGAGAGAGATATAAGCTCAGTTTTGTAGATTTCGTGCATGCTTTCGTGTCGGTTATCGTGTTCTTAGCGTTAGCCGTAGAGAGCTCGGATTTTCGGAGGTGTTTGCTCCCGGAGGACGATGAAAACAGTTGGGGTGGTCATTTTGTACTTATGATCAAGTACTTTGCTGTTATGGTGTTGACAATGGCAAGCTTCTTCTTTGCTATCTTTCCCTCAAAACGGAGAGGCATCGGAATTTCAGACATTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0008150 GO:0009705 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

191

Amino Acids

21.17

Weight (kDa)

5.14

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	11 - 186	2.1e-53	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27370
fragaria_vesca	FvH4_6g05181 FvH4_6g05200 FvH4_6g05210
malus_domestica	MD04G1211300.v1.1 MD12G1225200.v1.1
prunus_persica	Prupe.6G331700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0453861 RchiOBHm_Chr3g0453871 RchiOBHm_Chr3g0453891 RchiOBHm_Chr3g0453901 RchiOBHm_Chr3g0453911
rosa_laevigata	RLG00000025494 RLG00000025495 RLG00000025497
rosa_multiflora	Rmu_sc0003556.1_g000017 Rmu_sc0003556.1_g000021 Rmu_sc0003556.1_g000024 Rmu_sc0003556.1_g000025
rosa_roxburghii	Rroxscaffold_6G00430650 Rroxscaffold_6G00430680 Rroxscaffold_6G00430690 Rroxscaffold_6G00430710 Rroxscaffold_6G00430720 Rroxscaffold_6G00430730
rosa_rugosa	Rorug02G0651400 Rorug02G0651600 Rorug02G0651700.1 Rorug02G0651800
rosa_samantha	Rh3AG054100 Rh3AG054300 Rh3AG054400 Rh3BG055500 Rh3BG055700 Rh3BG056000 Rh3CG054500 Rh3CG054800 Rh3CG055000 Rh3CG055100 Rh3CG055200 Rh3DG055700 Rh3DG056100 Rh3DG056200 Rh3DG056300 Rh3DG056500
rosa_wichuraiana	Rw3G004160 Rw3G004170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	176
AciI	CCGC	5 cut(s)	69, 111, 174, 176, 226
AclWI	GGATC	1 cut(s)	290
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	558
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	2 cut(s)	471, 485
AfiI	CCNNNNNNNGG	4 cut(s)	35, 287, 305, 543
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	3 cut(s)	340, 408, 516
AluI	AGCT	3 cut(s)	340, 408, 516
Alw21I	GWGCWC	1 cut(s)	410
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	1 cut(s)	290
AoxI	GGCC	2 cut(s)	214, 223
ApoI	RAATTY	1 cut(s)	558
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	2 cut(s)	64, 434
AsuHPI	GGTGA	2 cut(s)	139, 190
AsuII	TTCGAA	1 cut(s)	81
AvaII	GGWCC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	410
BccI	CCATC	1 cut(s)	215
BceAI	ACGGC	2 cut(s)	330, 383
BclI	TGATCA	1 cut(s)	477
BcnI	CCSGG	2 cut(s)	64, 434
BcoDI	GTCTC	1 cut(s)	263
BglI	GCCNNNNNGGC	1 cut(s)	222
BisI	GCNGC	4 cut(s)	112, 174, 177, 226
BlsI	GCNGC	4 cut(s)	113, 175, 178, 227
BmcAI	AGTACT	1 cut(s)	485
Bme1390I	CCNGG	2 cut(s)	64, 434
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	2 cut(s)	64, 434
BmsI	GCATC	1 cut(s)	561
Bpu14I	TTCGAA	1 cut(s)	81
BpuMI	CCSGG	2 cut(s)	64, 434
BsaHI	GRCGYC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	174
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 287, 305, 543
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	264
BseLI	CCNNNNNNNGG	4 cut(s)	35, 287, 305, 543
BseMII	CTCAG	1 cut(s)	355
BseRI	GAGGAG	2 cut(s)	134, 181
Bsh1236I	CGCG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	216, 225
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	410
BsiSI	CCGG	4 cut(s)	36, 63, 306, 434
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	4 cut(s)	35, 287, 305, 543
BsmAI	GTCTC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	216, 225
Bso31I	GGTCTC	1 cut(s)	263
Bsp119I	TTCGAA	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp143I	GATC	3 cut(s)	20, 295, 477
BspACI	CCGC	5 cut(s)	69, 111, 174, 176, 226
BspANI	GGCC	2 cut(s)	216, 225
BspCNI	CTCAG	1 cut(s)	354
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	67
BspPI	GGATC	1 cut(s)	290
BspT104I	TTCGAA	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	3 cut(s)	20, 295, 477
BssNI	GRCGYC	1 cut(s)	8
Bst4CI	ACNGT	4 cut(s)	30, 96, 257, 452
BstACI	GRCGYC	1 cut(s)	8
BstBI	TTCGAA	1 cut(s)	81
BstC8I	GCNNGC	3 cut(s)	181, 363, 514
BstDEI	CTNAG	2 cut(s)	341, 388
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	264
BstFNI	CGCG	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	3 cut(s)	23, 298, 480
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	3 cut(s)	20, 295, 477
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 222
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	62, 432
BstUI	CGCG	1 cut(s)	176
BsuRI	GGCC	2 cut(s)	216, 225
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	264
Cac8I	GCNNGC	3 cut(s)	181, 363, 514
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	66
Cfr42I	CCGCGG	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	470, 484
CviAII	CATG	1 cut(s)	362
CviJI	RGCY	9 cut(s)	179, 216, 225, 309, 317, 340, 398, 408, 516
CviKI_1	RGCY	9 cut(s)	179, 216, 225, 309, 317, 340, 398, 408, 516
CviQI	GTAC	2 cut(s)	470, 484
DdeI	CTNAG	2 cut(s)	341, 388
DpnI	GATC	3 cut(s)	22, 297, 479
DpnII	GATC	3 cut(s)	20, 295, 477
EaeI	YGGCCR	1 cut(s)	223
Ecl136II	GAGCTC	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	410
Eco31I	GGTCTC	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	408
EcoICRI	GAGCTC	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	410
FaeI	CATG	1 cut(s)	365
FaiI	YATR	8 cut(s)	77, 208, 210, 294, 336, 363, 476, 497
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	1 cut(s)	361
FauNDI	CATATG	1 cut(s)	208
FbaI	TGATCA	1 cut(s)	477
Fnu4HI	GCNGC	4 cut(s)	112, 174, 177, 226
FokI	GGATG	1 cut(s)	251
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	4 cut(s)	112, 174, 177, 226
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	4 cut(s)	112, 174, 177, 226
HaeIII	GGCC	2 cut(s)	216, 225
HapII	CCGG	4 cut(s)	36, 63, 306, 434
HhaI	GCGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	365
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HindIII	AAGCTT	1 cut(s)	514
HinfI	GANTC	2 cut(s)	203, 302
HpaII	CCGG	4 cut(s)	36, 63, 306, 434
HphI	GGTGA	2 cut(s)	139, 190
Hpy166II	GTNNAC	1 cut(s)	504
Hpy188I	TCNGA	4 cut(s)	412, 420, 557, 565
Hpy188III	TCNNGA	2 cut(s)	281, 299
Hpy8I	GTNNAC	1 cut(s)	504
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	205, 281
HpyCH4III	ACNGT	4 cut(s)	30, 96, 257, 452
HpyCH4V	TGCA	2 cut(s)	120, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 222
HpyF3I	CTNAG	2 cut(s)	341, 388
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	1 cut(s)	365
HspAI	GCGC	1 cut(s)	171
Ksp22I	TGATCA	1 cut(s)	477
KspI	CCGCGG	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	20, 295, 477
LmnI	GCTCC	1 cut(s)	435
LpnPI	CCDG	6 cut(s)	49, 76, 294, 312, 319, 447
LweI	GCATC	1 cut(s)	561
MalI	GATC	3 cut(s)	22, 297, 479
MboI	GATC	3 cut(s)	20, 295, 477
MboII	GAAGA	2 cut(s)	178, 511
MhlI	GDGCHC	1 cut(s)	410
MluCI	AATT	2 cut(s)	240, 558
MlyI	GAGTC	2 cut(s)	197, 311
MnlI	CCTC	9 cut(s)	83, 155, 202, 259, 278, 414, 430, 542, 547
MseI	TTAA	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	4 cut(s)	36, 63, 306, 434
MspR9I	CCNGG	2 cut(s)	64, 434
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	117, 222
NciI	CCSGG	2 cut(s)	64, 434
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	3 cut(s)	20, 295, 477
NlaIII	CATG	1 cut(s)	365
NlaIV	GGNNCC	1 cut(s)	67
NspI	RCATGY	1 cut(s)	365
NspV	TTCGAA	1 cut(s)	81
PaeI	GCATGC	1 cut(s)	365
PfoI	TCCNGGA	1 cut(s)	432
PkrI	GCNGC	4 cut(s)	113, 175, 178, 227
PleI	GAGTC	2 cut(s)	197, 310
PpsI	GAGTC	2 cut(s)	197, 310
Psp124BI	GAGCTC	1 cut(s)	410
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	66
RsaI	GTAC	2 cut(s)	471, 485
RsaNI	GTAC	2 cut(s)	470, 484
SacI	GAGCTC	1 cut(s)	410
SacII	CCGCGG	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	4 cut(s)	112, 174, 177, 226
Sau3AI	GATC	3 cut(s)	20, 295, 477
Sau96I	GGNCC	1 cut(s)	66
ScaI	AGTACT	1 cut(s)	485
SchI	GAGTC	2 cut(s)	197, 311
ScrFI	CCNGG	2 cut(s)	64, 434
SduI	GDGCHC	1 cut(s)	410
SetI	ASST	7 cut(s)	54, 251, 292, 342, 410, 425, 518
SfaNI	GCATC	1 cut(s)	561
SfiI	GGCCNNNNNGGCC	1 cut(s)	222
Sfr303I	CCGCGG	1 cut(s)	177
SfuI	TTCGAA	1 cut(s)	81
SgrBI	CCGCGG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	66
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	2 cut(s)	240, 558
SsiI	CCGC	5 cut(s)	69, 111, 174, 176, 226
SstI	GAGCTC	1 cut(s)	410
StyD4I	CCNGG	2 cut(s)	62, 432
TaaI	ACNGT	4 cut(s)	30, 96, 257, 452
TaqI	TCGA	1 cut(s)	81
TasI	AATT	2 cut(s)	240, 558
TatI	WGTACW	2 cut(s)	469, 483
TauI	GCSGC	4 cut(s)	114, 176, 179, 228
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TspDTI	ATGAA	2 cut(s)	4, 459
TspGWI	ACGGA	2 cut(s)	252, 559
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	1 cut(s)	558
XceI	RCATGY	1 cut(s)	365
ZrmI	AGTACT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.