FvH4_6g05200

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001834
Physical Location & Seq
Forward (+)
2923769 .. 2924857
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05200.t1

Sequence Viewer

Length: 699 bp
ATGGCTACTGAAACACAAGACACAAACGTATCTGCCACTCAGAAGACCATAGCCAGTGCAGCCAATCTTGCTAACCTTCTACCTACCGGTACCGTCCTCGCATTTGAGACCCTCATTCCTAGTTTCTCTAACAACGGAGCATGCCATCCTGCCAACAAGGGCCTTTCCTCATCAGTCATTTTGATCTGTGCCCTCATTTGCTTCTTTTCCTCCTTCACTGATAGCTTCATTGATAGTACCGATGGAAAATTCTATTACGGGATCGCAACTAGGTCAGGCATACGCATCTTAAATCCTAGGAAAAAAGAGATGAGTTCTGATGAAAGAAAGCGCTTGGAGAAGTATAAGATAACGGGTACAGATTATTTTCATGCCTTTTTGGCACTAACTGTGTTCTTGATATATTCTCTTACCGACCTCAATGTGAAAAATTGTTTCTTTCCTAATGCGGGAGATGATCTCAATGAAATCATCATCAACTTACCCCTAGGAGCTGGGATTTTCGCATGCTTCTTGTTCACAATTTTTCCTACTACTCGAAGAGGGATAGGATACACGCAGCAGCGGCCGAGTAAGGACACAGATGACGGCAACCAGACCTTGACCACCACGACTGCATCGAAGGGATCAGAAGTGGAATTGGTGGGTGTGGCCGTAGAAGGAGGAGCTCATCAGCCTCAAGCCTCCACTTCTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

233

Amino Acids

25.05

Weight (kDa)

5.91

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 19 - 185 3.6e-58 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 89
AciI CCGC 2 cut(s) 449, 565
AclWI GGATC 2 cut(s) 269, 634
AcoI YGGCCR 2 cut(s) 566, 651
AcsI RAATTY 1 cut(s) 248
AfaI GTAC 3 cut(s) 91, 238, 358
AfeI AGCGCT 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 449
AgeI ACCGGT 1 cut(s) 86
AluBI AGCT 3 cut(s) 225, 494, 668
AluI AGCT 3 cut(s) 225, 494, 668
Alw21I GWGCWC 1 cut(s) 670
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 2 cut(s) 269, 634
Aor51HI AGCGCT 1 cut(s) 332
AoxI GGCC 3 cut(s) 160, 566, 651
ApeKI GCWGC 3 cut(s) 59, 559, 562
ApoI RAATTY 1 cut(s) 248
AsiGI ACCGGT 1 cut(s) 86
Asp718I GGTACC 1 cut(s) 89
AspA2I CCTAGG 2 cut(s) 296, 487
AspLEI GCGC 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 160
AvrII CCTAGG 2 cut(s) 296, 487
BaeGI GKGCMC 1 cut(s) 193
BaeI ACNNNNGTAYC 2 cut(s) 12, 45
BanI GGYRCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 670
BbsI GAAGAC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 670
BbvI GCAGC 3 cut(s) 71, 571, 574
BccI CCATC 2 cut(s) 153, 236
BceAI ACGGC 2 cut(s) 604, 638
BciVI GTATCC 1 cut(s) 545
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 5 cut(s) 120, 270, 297, 488, 697
BfoI RGCGCY 1 cut(s) 334
BfuI GTATCC 1 cut(s) 545
BglI GCCNNNNNGGC 1 cut(s) 380
BisI GCNGC 4 cut(s) 60, 560, 563, 566
BlnI CCTAGG 2 cut(s) 296, 487
BlsI GCNGC 4 cut(s) 61, 561, 564, 567
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 91
BmsI GCATC 2 cut(s) 294, 626
BpiI GAAGAC 1 cut(s) 50
BplI GAGNNNNNCTC 2 cut(s) 444, 476
BpuEI CTTGAG 1 cut(s) 663
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 296, 487
BsaWI WCCGGW 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 54
BseDI CCNNGG 2 cut(s) 296, 487
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 54
BseRI GAGGAG 1 cut(s) 678
BseSI GKGCMC 1 cut(s) 193
BseX3I CGGCCG 1 cut(s) 566
BseXI GCAGC 3 cut(s) 71, 571, 574
BseYI CCCAGC 1 cut(s) 494
BsgI GTGCAG 1 cut(s) 78
Bsh1285I CGRYCG 1 cut(s) 569
BshFI GGCC 3 cut(s) 162, 568, 653
BshNI GGYRCC 1 cut(s) 89
BshTI ACCGGT 1 cut(s) 86
BsiEI CGRYCG 1 cut(s) 569
BsiHKAI GWGCWC 1 cut(s) 670
BsiSI CCGG 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 101
BsnI GGCC 3 cut(s) 162, 568, 653
Bso31I GGTCTC 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 193, 670
Bsp143I GATC 4 cut(s) 183, 261, 457, 626
BspACI CCGC 2 cut(s) 449, 565
BspANI GGCC 3 cut(s) 162, 568, 653
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 91
BspPI GGATC 2 cut(s) 269, 634
BspT107I GGYRCC 1 cut(s) 89
BspTNI GGTCTC 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 1 cut(s) 54
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 296, 487
BssMI GATC 4 cut(s) 183, 261, 457, 626
BssT1I CCWWGG 2 cut(s) 296, 487
Bst4CI ACNGT 2 cut(s) 94, 391
Bst6I CTCTTC 1 cut(s) 535
BstC8I GCNNGC 2 cut(s) 142, 508
BstDEI CTNAG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 145
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 4 cut(s) 186, 264, 460, 629
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 4 cut(s) 183, 261, 457, 626
BstMCI CGRYCG 1 cut(s) 569
BstMWI GCNNNNNNNGC 4 cut(s) 59, 68, 380, 565
BstNSI RCATGY 2 cut(s) 144, 510
BstSLI GKGCMC 1 cut(s) 193
BstV1I GCAGC 3 cut(s) 71, 571, 574
BstV2I GAAGAC 1 cut(s) 50
BstZI CGGCCG 1 cut(s) 566
BsuI GTATCC 1 cut(s) 545
BsuRI GGCC 3 cut(s) 162, 568, 653
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 2 cut(s) 61, 216
Cac8I GCNNGC 2 cut(s) 142, 508
CfoI GCGC 1 cut(s) 333
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 160
Csp6I GTAC 3 cut(s) 90, 237, 357
CspAI ACCGGT 1 cut(s) 86
CviAII CATG 3 cut(s) 141, 371, 507
CviQI GTAC 3 cut(s) 90, 237, 357
DdeI CTNAG 1 cut(s) 39
DpnI GATC 4 cut(s) 185, 263, 459, 628
DpnII GATC 4 cut(s) 183, 261, 457, 626
EaeI YGGCCR 2 cut(s) 566, 651
EagI CGGCCG 1 cut(s) 566
Eam1104I CTCTTC 1 cut(s) 535
EarI CTCTTC 1 cut(s) 535
Ecl136II GAGCTC 1 cut(s) 668
EclXI CGGCCG 1 cut(s) 566
Eco130I CCWWGG 2 cut(s) 296, 487
Eco24I GRGCYC 1 cut(s) 670
Eco31I GGTCTC 1 cut(s) 101
Eco47III AGCGCT 1 cut(s) 332
Eco52I CGGCCG 1 cut(s) 566
Eco53kI GAGCTC 1 cut(s) 668
EcoICRI GAGCTC 1 cut(s) 668
EcoO109I RGGNCCY 1 cut(s) 160
EcoT14I CCWWGG 2 cut(s) 296, 487
EcoT38I GRGCYC 1 cut(s) 670
ErhI CCWWGG 2 cut(s) 296, 487
FaeI CATG 3 cut(s) 144, 374, 510
FaiI YATR 7 cut(s) 50, 142, 281, 345, 372, 403, 508
FatI CATG 3 cut(s) 140, 370, 506
FauI CCCGC 1 cut(s) 442
Fnu4HI GCNGC 4 cut(s) 60, 560, 563, 566
FokI GGATG 1 cut(s) 132
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 4 cut(s) 60, 560, 563, 566
FspBI CTAG 5 cut(s) 120, 270, 297, 488, 697
GlaI GCGC 1 cut(s) 332
GluI GCNGC 4 cut(s) 60, 560, 563, 566
GsaI CCCAGC 1 cut(s) 498
HaeII RGCGCY 1 cut(s) 334
HaeIII GGCC 3 cut(s) 162, 568, 653
HapII CCGG 1 cut(s) 87
HhaI GCGC 1 cut(s) 333
Hin1II CATG 3 cut(s) 144, 374, 510
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HpaII CCGG 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 519
Hpy188I TCNGA 3 cut(s) 42, 319, 631
Hpy188III TCNNGA 1 cut(s) 397
Hpy8I GTNNAC 1 cut(s) 519
HpyAV CCTTC 4 cut(s) 86, 223, 616, 653
HpyCH4III ACNGT 2 cut(s) 94, 391
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 59, 617
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 68, 380, 565
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 3 cut(s) 144, 374, 510
HspAI GCGC 1 cut(s) 331
KpnI GGTACC 1 cut(s) 93
Kzo9I GATC 4 cut(s) 183, 261, 457, 626
LmnI GCTCC 3 cut(s) 137, 491, 665
LpnPI CCDG 6 cut(s) 67, 100, 162, 261, 480, 608
Lsp1109I GCAGC 3 cut(s) 71, 571, 574
LweI GCATC 2 cut(s) 294, 626
MaeI CTAG 5 cut(s) 120, 270, 297, 488, 697
MaeII ACGT 1 cut(s) 27
MalI GATC 4 cut(s) 185, 263, 459, 628
MboI GATC 4 cut(s) 183, 261, 457, 626
MboII GAAGA 2 cut(s) 55, 552
MhlI GDGCHC 2 cut(s) 193, 670
MluCI AATT 4 cut(s) 248, 430, 522, 638
MseI TTAA 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 565
MspI CCGG 1 cut(s) 87
MwoI GCNNNNNNNGC 4 cut(s) 59, 68, 380, 565
NdeII GATC 4 cut(s) 183, 261, 457, 626
NlaIII CATG 3 cut(s) 144, 374, 510
NlaIV GGNNCC 1 cut(s) 91
NmeAIII GCCGAG 1 cut(s) 594
NspI RCATGY 2 cut(s) 144, 510
PaeI GCATGC 2 cut(s) 144, 510
PcsI WCGNNNNNNNCGW 1 cut(s) 617
PinAI ACCGGT 1 cut(s) 86
PkrI GCNGC 4 cut(s) 61, 561, 564, 567
Psp124BI GAGCTC 1 cut(s) 670
PspFI CCCAGC 1 cut(s) 494
PspN4I GGNNCC 1 cut(s) 91
PspPI GGNCC 1 cut(s) 160
RsaI GTAC 3 cut(s) 91, 238, 358
RsaNI GTAC 3 cut(s) 90, 237, 357
SacI GAGCTC 1 cut(s) 670
SaqAI TTAA 1 cut(s) 290
SatI GCNGC 4 cut(s) 60, 560, 563, 566
Sau3AI GATC 4 cut(s) 183, 261, 457, 626
Sau96I GGNCC 1 cut(s) 160
SduI GDGCHC 2 cut(s) 193, 670
SfaNI GCATC 2 cut(s) 294, 626
SmlI CTYRAG 1 cut(s) 678
SmoI CTYRAG 1 cut(s) 678
SphI GCATGC 2 cut(s) 144, 510
Sse9I AATT 4 cut(s) 248, 430, 522, 638
SsiI CCGC 2 cut(s) 449, 565
SspMI CTAG 5 cut(s) 120, 270, 297, 488, 697
SstI GAGCTC 1 cut(s) 670
StyI CCWWGG 2 cut(s) 296, 487
TaaI ACNGT 2 cut(s) 94, 391
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 538, 620
TasI AATT 4 cut(s) 248, 430, 522, 638
TauI GCSGC 1 cut(s) 568
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TscAI CASTG 2 cut(s) 61, 223
TseI GCWGC 3 cut(s) 59, 559, 562
TspDTI ATGAA 4 cut(s) 217, 336, 359, 480
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 2 cut(s) 61, 223
XapI RAATTY 1 cut(s) 248
XceI RCATGY 2 cut(s) 144, 510
XmaJI CCTAGG 2 cut(s) 296, 487
XspI CTAG 5 cut(s) 120, 270, 297, 488, 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.