Rroxscaffold_6G00430730

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001834
Physical Location & Seq
Forward (+)
50856939 .. 50857646
708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00430730.1

Sequence Viewer

Length: 708 bp
ATGACTACCGTAACAAAAGACGAAGACGTAACACCTACTCAAAAGACCATAGCCAGTGCAGCCAATCTTGCTAACCTCCTACCTACCGGCACCGTCCTCGCATTCCAGACCCTCATTCCTAGTTTCTCCAACAACGGAGCATGCCATCCCGCCAATATAGGCCTTTCAATATCCATCATTTTAATCTGTGCCCTTATCTGCTTCTTCTCCTCCTTTACTGATAGCTTCATAGACAGTACCGATGAAAAATTCTATTATGGTATCATCACTCGCGAAGGCATGCACATCTTAAATCCTAGAGCAAAAGAGCTTACTGATGACCAAAAAAAGCGCTTGAGAAAGTATAGAATAAAGCCTATAGATTATTTTCACGCTTTTTTGTCACTAATTGTGTTCTTGATCTTTGCTCTTACCGACCTCAACGTGAAAAATTGTTTCTTTCCGGACGCGGGAGATGATCTCAATCAAATCATTATCAATTTGCCTCTAGGAGCTGGGGTTTTCGTATCCTTCTTATTCACAATTTTGCCAACTACTCGAAGAGGGATAGGATACACGCAGCCCCGGGCAAATAAGAAAAAAAAAAGTGGGAACAAGACCTCGACCACCACGACCACGTCCAAAAGATCGGACTTGGAAATGGGGAGTGTGGTCGTAGGAGGAGCCGAGGCTGAGGCCAGGACCTCCATCACAACCTCTACCCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

235

Amino Acids

25.74

Weight (kDa)

9.03

Isoelectric Point (pI)

32.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 19 - 185 4.1e-59 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 89
AccII CGCG 2 cut(s) 273, 449
AccIII TCCGGA 1 cut(s) 442
AciI CCGC 2 cut(s) 150, 449
AcsI RAATTY 1 cut(s) 248
AfaI GTAC 1 cut(s) 238
AfeI AGCGCT 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 449
AgsI TTSAA 1 cut(s) 168
AjiI CACGTC 1 cut(s) 618
AjnI CCWGG 1 cut(s) 677
AluBI AGCT 3 cut(s) 225, 310, 494
AluI AGCT 3 cut(s) 225, 310, 494
Ama87I CYCGRG 1 cut(s) 564
Aor13HI TCCGGA 1 cut(s) 442
Aor51HI AGCGCT 1 cut(s) 332
AoxI GGCC 2 cut(s) 160, 675
ApeKI GCWGC 2 cut(s) 59, 559
ApoI RAATTY 1 cut(s) 248
AspLEI GCGC 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 681
AsuC2I CCSGG 2 cut(s) 565, 566
AvaI CYCGRG 1 cut(s) 564
AvaII GGWCC 1 cut(s) 681
BaeGI GKGCMC 1 cut(s) 193
BanI GGYRCC 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 30
BbvCI CCTCAGC 1 cut(s) 672
BbvI GCAGC 2 cut(s) 71, 571
BccI CCATC 3 cut(s) 153, 182, 695
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BciT130I CCWGG 1 cut(s) 679
BciVI GTATCC 2 cut(s) 517, 545
BcnI CCSGG 2 cut(s) 565, 566
BfaI CTAG 3 cut(s) 120, 297, 488
BfmI CTRYAG 1 cut(s) 357
BfoI RGCGCY 1 cut(s) 334
BfuI GTATCC 2 cut(s) 517, 545
BisI GCNGC 2 cut(s) 60, 560
BlsI GCNGC 2 cut(s) 61, 561
Bme1390I CCNGG 3 cut(s) 565, 566, 679
Bme18I GGWCC 1 cut(s) 681
BmeT110I CYCGRG 1 cut(s) 564
BmgBI CACGTC 1 cut(s) 618
BmgT120I GGNCC 1 cut(s) 681
BmiI GGNNCC 2 cut(s) 91, 664
BmrFI CCNGG 3 cut(s) 565, 566, 679
BpiI GAAGAC 1 cut(s) 30
BplI GAGNNNNNCTC 2 cut(s) 444, 476
Bpu10I CCTNAGC 1 cut(s) 672
BpuEI CTTGAG 1 cut(s) 355
BpuMI CCSGG 2 cut(s) 565, 566
BsaBI GATNNNNATC 1 cut(s) 462
BsaJI CCNNGG 3 cut(s) 563, 564, 666
BsaWI WCCGGW 1 cut(s) 442
BsaXI ACNNNNNCTCC 2 cut(s) 483, 513
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 54
Bse8I GATNNNNATC 1 cut(s) 462
BseAI TCCGGA 1 cut(s) 442
BseBI CCWGG 1 cut(s) 679
BseDI CCNNGG 3 cut(s) 563, 564, 666
BseGI GGATG 1 cut(s) 145
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 1 cut(s) 663
BseNI ACTGG 1 cut(s) 54
BseRI GAGGAG 2 cut(s) 199, 675
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 2 cut(s) 71, 571
BseYI CCCAGC 1 cut(s) 494
BsgI GTGCAG 1 cut(s) 78
Bsh1236I CGCG 2 cut(s) 273, 449
BshFI GGCC 2 cut(s) 162, 677
BshNI GGYRCC 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 564
BsiSI CCGG 3 cut(s) 87, 443, 565
BslI CCNNNNNNNGG 1 cut(s) 449
BsmI GAATGC 1 cut(s) 101
BsnI GGCC 2 cut(s) 162, 677
BsoBI CYCGRG 1 cut(s) 564
Bsp1286I GDGCHC 1 cut(s) 193
Bsp13I TCCGGA 1 cut(s) 442
Bsp143I GATC 3 cut(s) 399, 457, 626
Bsp68I TCGCGA 1 cut(s) 273
BspACI CCGC 2 cut(s) 150, 449
BspANI GGCC 2 cut(s) 162, 677
BspCNI CTCAG 1 cut(s) 664
BspEI TCCGGA 1 cut(s) 442
BspFNI CGCG 2 cut(s) 273, 449
BspLI GGNNCC 2 cut(s) 91, 664
BspT107I GGYRCC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 1 cut(s) 54
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 3 cut(s) 563, 564, 666
BssMI GATC 3 cut(s) 399, 457, 626
Bst2UI CCWGG 1 cut(s) 679
Bst4CI ACNGT 3 cut(s) 10, 94, 236
Bst6I CTCTTC 1 cut(s) 535
BstC8I GCNNGC 2 cut(s) 142, 281
BstDEI CTNAG 1 cut(s) 672
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 2 cut(s) 273, 449
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 3 cut(s) 402, 460, 629
BstMBI GATC 3 cut(s) 399, 457, 626
BstMWI GCNNNNNNNGC 2 cut(s) 59, 68
BstNI CCWGG 1 cut(s) 679
BstNSI RCATGY 2 cut(s) 144, 283
BstSCI CCNGG 3 cut(s) 563, 564, 677
BstSFI CTRYAG 1 cut(s) 357
BstSLI GKGCMC 1 cut(s) 193
BstUI CGCG 2 cut(s) 273, 449
BstV1I GCAGC 2 cut(s) 71, 571
BstV2I GAAGAC 1 cut(s) 30
BsuI GTATCC 2 cut(s) 517, 545
BsuRI GGCC 2 cut(s) 162, 677
BtrI CACGTC 1 cut(s) 618
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 61
BtuMI TCGCGA 1 cut(s) 273
Cac8I GCNNGC 2 cut(s) 142, 281
CfoI GCGC 1 cut(s) 333
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 681
Cfr9I CCCGGG 1 cut(s) 564
CseI GACGC 1 cut(s) 455
Csp6I GTAC 1 cut(s) 237
CviAII CATG 2 cut(s) 141, 280
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 1 cut(s) 672
DpnI GATC 3 cut(s) 401, 459, 628
DpnII GATC 3 cut(s) 399, 457, 626
Eam1104I CTCTTC 1 cut(s) 535
EarI CTCTTC 1 cut(s) 535
Eco147I AGGCCT 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 681
Eco47III AGCGCT 1 cut(s) 332
Eco88I CYCGRG 1 cut(s) 564
EcoO109I RGGNCCY 1 cut(s) 681
EcoRII CCWGG 1 cut(s) 677
FaeI CATG 2 cut(s) 144, 283
FaiI YATR 8 cut(s) 50, 142, 158, 230, 258, 281, 345, 359
FatI CATG 2 cut(s) 140, 279
FauI CCCGC 2 cut(s) 157, 442
Fnu4HI GCNGC 2 cut(s) 60, 560
FokI GGATG 1 cut(s) 132
Fsp4HI GCNGC 2 cut(s) 60, 560
FspBI CTAG 3 cut(s) 120, 297, 488
GlaI GCGC 1 cut(s) 332
GluI GCNGC 2 cut(s) 60, 560
GsaI CCCAGC 1 cut(s) 498
HaeII RGCGCY 1 cut(s) 334
HaeIII GGCC 2 cut(s) 162, 677
HapII CCGG 3 cut(s) 87, 443, 565
HgaI GACGC 1 cut(s) 455
HhaI GCGC 1 cut(s) 333
Hin1II CATG 2 cut(s) 144, 283
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HpaII CCGG 3 cut(s) 87, 443, 565
Hpy188I TCNGA 1 cut(s) 631
Hpy188III TCNNGA 4 cut(s) 106, 272, 397, 443
HpyAV CCTTC 2 cut(s) 269, 520
HpyCH4III ACNGT 3 cut(s) 10, 94, 236
HpyCH4IV ACGT 3 cut(s) 27, 423, 617
HpyCH4V TGCA 2 cut(s) 59, 283
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 68
HpyF3I CTNAG 1 cut(s) 672
HpySE526I ACGT 3 cut(s) 27, 423, 617
Hsp92II CATG 2 cut(s) 144, 283
HspAI GCGC 1 cut(s) 331
Kpn2I TCCGGA 1 cut(s) 442
Kzo9I GATC 3 cut(s) 399, 457, 626
LmnI GCTCC 3 cut(s) 137, 491, 662
LpnPI CCDG 8 cut(s) 67, 100, 119, 456, 480, 578, 664, 691
Lsp1109I GCAGC 2 cut(s) 71, 571
MaeI CTAG 3 cut(s) 120, 297, 488
MaeII ACGT 3 cut(s) 27, 423, 617
MaeIII GTNAC 3 cut(s) 10, 28, 381
MalI GATC 3 cut(s) 401, 459, 628
MboI GATC 3 cut(s) 399, 457, 626
MboII GAAGA 3 cut(s) 35, 196, 552
MhlI GDGCHC 1 cut(s) 193
MluCI AATT 5 cut(s) 248, 387, 430, 478, 522
MmeI TCCRAC 1 cut(s) 153
MroI TCCGGA 1 cut(s) 442
MseI TTAA 2 cut(s) 182, 290
MspI CCGG 3 cut(s) 87, 443, 565
MspR9I CCNGG 3 cut(s) 565, 566, 679
Mva1269I GAATGC 1 cut(s) 101
MvaI CCWGG 1 cut(s) 679
MvnI CGCG 2 cut(s) 273, 449
MwoI GCNNNNNNNGC 2 cut(s) 59, 68
NciI CCSGG 2 cut(s) 565, 566
NdeII GATC 3 cut(s) 399, 457, 626
NlaIII CATG 2 cut(s) 144, 283
NlaIV GGNNCC 2 cut(s) 91, 664
NmeAIII GCCGAG 1 cut(s) 691
NmuCI GTSAC 1 cut(s) 381
NruI TCGCGA 1 cut(s) 273
NspI RCATGY 2 cut(s) 144, 283
PaeI GCATGC 2 cut(s) 144, 283
PceI AGGCCT 1 cut(s) 162
PcsI WCGNNNNNNNCGW 1 cut(s) 608
PctI GAATGC 1 cut(s) 101
PflFI GACNNNGTC 1 cut(s) 616
PkrI GCNGC 2 cut(s) 61, 561
PpuMI RGGWCCY 1 cut(s) 681
Psp5II RGGWCCY 1 cut(s) 681
Psp6I CCWGG 1 cut(s) 677
PspFI CCCAGC 1 cut(s) 494
PspGI CCWGG 1 cut(s) 677
PspN4I GGNNCC 2 cut(s) 91, 664
PspPI GGNCC 1 cut(s) 681
PspPPI RGGWCCY 1 cut(s) 681
PsyI GACNNNGTC 1 cut(s) 616
RruI TCGCGA 1 cut(s) 273
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SaqAI TTAA 2 cut(s) 182, 290
SatI GCNGC 2 cut(s) 60, 560
Sau3AI GATC 3 cut(s) 399, 457, 626
Sau96I GGNCC 1 cut(s) 681
ScrFI CCNGG 3 cut(s) 565, 566, 679
SduI GDGCHC 1 cut(s) 193
SfcI CTRYAG 1 cut(s) 357
SinI GGWCC 1 cut(s) 681
SmaI CCCGGG 1 cut(s) 566
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
SphI GCATGC 2 cut(s) 144, 283
Sse9I AATT 5 cut(s) 248, 387, 430, 478, 522
SseBI AGGCCT 1 cut(s) 162
SsiI CCGC 2 cut(s) 150, 449
SspMI CTAG 3 cut(s) 120, 297, 488
StuI AGGCCT 1 cut(s) 162
StyD4I CCNGG 3 cut(s) 563, 564, 677
TaaI ACNGT 3 cut(s) 10, 94, 236
TaiI ACGT 3 cut(s) 30, 426, 620
TaqI TCGA 2 cut(s) 538, 602
TasI AATT 5 cut(s) 248, 387, 430, 478, 522
Tru1I TTAA 2 cut(s) 182, 290
Tru9I TTAA 2 cut(s) 182, 290
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 1 cut(s) 381
TseI GCWGC 2 cut(s) 59, 559
Tsp45I GTSAC 1 cut(s) 381
TspDTI ATGAA 2 cut(s) 217, 258
TspGWI ACGGA 1 cut(s) 150
TspMI CCCGGG 1 cut(s) 564
TspRI CASTG 1 cut(s) 61
Tth111I GACNNNGTC 1 cut(s) 616
VpaK11BI GGWCC 1 cut(s) 681
XapI RAATTY 1 cut(s) 248
XceI RCATGY 2 cut(s) 144, 283
XmaI CCCGGG 1 cut(s) 564
XspI CTAG 3 cut(s) 120, 297, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.